Experiment set25S542 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_AminoAcid20 rep C; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5339 -7.9 -19.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5338 -7.0 -24.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5337 -6.9 -14.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3271 -5.7 -4.3 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2277 -5.3 -3.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3786 -5.3 -12.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_3248 -4.9 -5.5 Probable transmembrane protein compare
Pf6N2E2_3785 -3.7 -7.4 Twin-arginine translocation protein TatB compare
Pf6N2E2_3346 -3.5 -8.1 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_4351 -3.5 -17.1 Predicted signal transduction protein compare
Pf6N2E2_3932 -3.3 -2.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3665 -3.2 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3661 -3.2 -16.8 hypothetical protein compare
Pf6N2E2_3645 -3.1 -10.1 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_2822 -2.9 -5.7 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3782 -2.8 -7.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4773 -2.8 -1.2 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_3899 -2.7 -13.3 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2318 -2.7 -21.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4473 -2.6 -8.7 HlyD family secretion protein compare
Pf6N2E2_2324 -2.6 -1.7 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_482 -2.6 -1.7 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_5073 -2.5 -6.3 Large-conductance mechanosensitive channel compare
Pf6N2E2_2474 -2.4 -10.9 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5291 -2.4 -12.8 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3808 -2.2 -4.0 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) compare
Pf6N2E2_2858 -2.2 -2.5 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_2320 -2.2 -13.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3621 -2.2 -3.9 putative transporter, required for glycine utilization (from data) compare
Pf6N2E2_2317 -2.2 -6.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4803 -2.2 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2217 -2.2 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4279 -2.2 -10.7 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4907 -2.1 -12.6 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_5292 -2.1 -4.3 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_3656 -2.1 -9.8 Probable transcription regulator Mig-14 compare
Pf6N2E2_2258 -2.1 -3.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4471 -2.0 -4.3 ABC-type multidrug transport system, permease component compare
Pf6N2E2_434 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_5527 -2.0 -1.4 Cold shock protein CspC compare
Pf6N2E2_4472 -2.0 -10.0 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3264 -2.0 -10.9 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2753 -2.0 -2.0 HtrA protease/chaperone protein compare
Pf6N2E2_4075 -1.9 -10.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3984 -1.9 -11.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_479 -1.9 -3.3 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_5679 -1.9 -3.7 hypothetical protein compare
Pf6N2E2_4836 -1.9 -8.0 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Pf6N2E2_2578 -1.8 -1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_4068 -1.8 -12.5 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_2473 -1.8 -0.7 Major outer membrane lipoprotein I compare
Pf6N2E2_2707 -1.8 -5.8 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_3687 -1.8 -1.1 FIG00959437: hypothetical protein compare
Pf6N2E2_2919 -1.8 -2.0 FIG00955830: hypothetical protein compare
Pf6N2E2_605 -1.8 -1.6 FIG002465: BNR repeat protein compare
Pf6N2E2_5950 -1.8 -2.6 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2447 -1.8 -6.8 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5728 -1.8 -1.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3591 -1.7 -1.2 NUDIX hydrolase compare
Pf6N2E2_6064 -1.7 -3.1 2-methylaconitate isomerase compare
Pf6N2E2_5153 -1.7 -6.4 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_4187 -1.7 -14.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4052 -1.7 -0.7 FIG00955481: hypothetical protein compare
Pf6N2E2_1147 -1.7 -3.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_1670 -1.7 -1.1 conserved membrane protein compare
Pf6N2E2_942 -1.7 -1.1 Mll6465 protein compare
Pf6N2E2_3942 -1.7 -3.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4453 -1.7 -9.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2139 -1.6 -4.0 Paraquat-inducible protein A compare
Pf6N2E2_4072 -1.6 -8.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2071 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_2367 -1.6 -0.9 hypothetical protein compare
Pf6N2E2_2552 -1.6 -4.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3667 -1.6 -7.3 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5647 -1.6 -2.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2292 -1.6 -1.0 Universal stress protein family COG0589 compare
Pf6N2E2_3060 -1.6 -3.7 Outer membrane protein H precursor compare
Pf6N2E2_289 -1.6 -7.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3004 -1.6 -1.8 Prophage baseplate assembly protein V compare
Pf6N2E2_5084 -1.6 -6.1 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_1709 -1.6 -1.4 multidrug resistance transporter, Bcr/CflA family compare
Pf6N2E2_3659 -1.5 -5.9 Protein fixF compare
Pf6N2E2_3261 -1.5 -11.1 hypothetical protein compare
Pf6N2E2_922 -1.5 -1.7 FIG00794167: hypothetical protein compare
Pf6N2E2_5553 -1.5 -3.1 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_453 -1.5 -0.9 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_4458 -1.5 -1.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_2927 -1.5 -2.1 Putative signal peptide protein compare
Pf6N2E2_4543 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_2795 -1.4 -0.9 putative exported protein compare
Pf6N2E2_3270 -1.4 -3.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3603 -1.4 -1.7 FIG003573: hypothetical protein compare
Pf6N2E2_3037 -1.4 -6.6 RNA polymerase sigma factor RpoS compare
Pf6N2E2_799 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_6061 -1.4 -8.9 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_945 -1.4 -0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2778 -1.4 -0.9 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_4160 -1.4 -0.5 Cytochrome c5 compare
Pf6N2E2_2193 -1.4 -4.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_5425 -1.3 -1.0 hypothetical protein compare
Pf6N2E2_5746 -1.3 -1.5 Cobalamin synthase compare
Pf6N2E2_295 -1.3 -0.9 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_5517 -1.3 -0.9 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_4678 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_1603 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_1281 -1.3 -0.8 ATPase involved in DNA repair compare
Pf6N2E2_1502 -1.3 -0.7 Two-component system regulatory protein compare
Pf6N2E2_5155 -1.3 -3.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4427 -1.3 -1.0 FIG00954215: hypothetical protein compare
Pf6N2E2_5097 -1.3 -0.9 FIG00953595: hypothetical protein compare
Pf6N2E2_1248 -1.3 -0.8 MutT/nudix family protein compare
Pf6N2E2_1501 -1.3 -0.8 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_2708 -1.3 -0.9 Lactam utilization protein LamB compare
Pf6N2E2_1754 -1.3 -0.8 FIG00731982: hypothetical protein compare
Pf6N2E2_1391 -1.3 -0.8 DNA-binding response regulator, LuxR family compare
Pf6N2E2_906 -1.3 -0.8 ISPpu14, transposase Orf2 compare
Pf6N2E2_472 -1.3 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_6065 -1.3 -0.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1875 -1.3 -0.8 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_477 -1.3 -2.3 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_4451 -1.3 -7.6 FIG139438: lipoprotein B compare
Pf6N2E2_1028 -1.3 -0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_2995 -1.3 -0.8 FIG00959768: hypothetical protein compare
Pf6N2E2_2988 -1.3 -0.9 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_6062 -1.3 -2.2 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_2844 -1.3 -1.2 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_2062 -1.3 -0.7 FIG00955561: hypothetical protein compare
Pf6N2E2_5704 -1.3 -0.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_4278 -1.3 -7.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2155 -1.2 -2.3 hypothetical protein compare
Pf6N2E2_2080 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_481 -1.2 -5.1 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) compare
Pf6N2E2_904 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_5455 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_419 -1.2 -2.1 STAS domain protein compare
Pf6N2E2_5665 -1.2 -7.8 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_2681 -1.2 -0.8 3-phosphoglycerate kinase compare
Pf6N2E2_4658 -1.2 -1.8 FIG00955006: hypothetical protein compare
Pf6N2E2_2513 -1.2 -0.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_1040 -1.2 -0.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1776 -1.2 -0.7 Chemotaxis protein CheD compare
Pf6N2E2_956 -1.2 -1.1 FIG01210404: hypothetical protein compare
Pf6N2E2_3268 -1.2 -3.1 Ribosome hibernation protein YhbH compare
Pf6N2E2_3349 -1.2 -0.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5178 -1.2 -1.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_70 -1.2 -3.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4990 -1.2 -0.8 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_5622 -1.2 -0.7 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_473 -1.2 -0.8 putative cytochrome p450 oxidoreductase compare
Pf6N2E2_1987 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_6082 -1.2 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2682 -1.2 -1.3 Transcriptional regulator, LysR family compare
Pf6N2E2_4171 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_3100 -1.2 -2.6 FIG00953063: hypothetical protein compare
Pf6N2E2_178 -1.2 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5340 -1.2 -8.4 Stringent starvation protein A compare
Pf6N2E2_4084 -1.2 -9.5 Transcriptional regulator compare
Pf6N2E2_234 -1.2 -1.3 FIG00454312: hypothetical protein compare
Pf6N2E2_3557 -1.2 -0.7 Chaperone-modulator protein CbpM compare
Pf6N2E2_2467 -1.2 -0.7 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_2388 -1.2 -0.8 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_3550 -1.2 -0.7 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_1864 -1.2 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4763 -1.2 -0.8 Biotin synthesis protein BioC compare
Pf6N2E2_4152 -1.2 -3.8 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_3373 -1.1 -3.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_74 -1.1 -0.7 DedD protein compare
Pf6N2E2_3312 -1.1 -1.4 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_3283 -1.1 -5.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_5986 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4818 -1.1 -1.0 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_4684 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_4479 -1.1 -0.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_4440 -1.1 -2.2 Small-conductance mechanosensitive channel compare
Pf6N2E2_5843 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_3763 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_4508 -1.1 -0.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3720 -1.1 -0.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_4074 -1.1 -9.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_4761 -1.1 -0.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2880 -1.1 -1.0 FIG00959696: hypothetical protein compare
Pf6N2E2_848 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_6040 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_4340 -1.1 -0.7 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf6N2E2_1249 -1.1 -1.0 Transcriptional regulator, AraC family compare
Pf6N2E2_2501 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_5703 -1.1 -0.7 outer membrane protein H1 compare
Pf6N2E2_3876 -1.1 -2.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5087 -1.1 -0.7 Transcription elongation factor GreB-related protein compare
Pf6N2E2_5869 -1.1 -0.7 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_4779 -1.1 -1.2 Transcriptional regulator, AsnC family compare
Pf6N2E2_4188 -1.1 -0.7 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_3323 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_1273 -1.1 -1.0 Probable RND efflux membrane fusion protein compare
Pf6N2E2_2284 -1.1 -1.5 Cell division inhibitor-related protein compare
Pf6N2E2_5736 -1.1 -1.5 FIG00961250: hypothetical protein compare
Pf6N2E2_5807 -1.1 -1.1 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_2636 -1.0 -0.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3424 -1.0 -2.9 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_1784 -1.0 -0.7 Methyl-accepting chemotaxis protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Ying_AminoAcid20 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_AminoAcid20 across organisms