Experiment set25S541 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_AminoAcid20 rep B; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5339 -5.5 -21.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2277 -5.3 -3.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5338 -5.3 -31.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3271 -5.1 -6.0 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3248 -4.9 -5.6 Probable transmembrane protein compare
Pf6N2E2_5337 -4.8 -14.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3786 -4.0 -12.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_3785 -3.9 -14.4 Twin-arginine translocation protein TatB compare
Pf6N2E2_3782 -3.8 -10.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3661 -3.4 -16.1 hypothetical protein compare
Pf6N2E2_3665 -3.2 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3932 -3.2 -3.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3844 -3.0 -2.0 hypothetical protein compare
Pf6N2E2_3645 -2.9 -10.8 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_4351 -2.8 -16.9 Predicted signal transduction protein compare
Pf6N2E2_4473 -2.7 -8.6 HlyD family secretion protein compare
Pf6N2E2_3346 -2.7 -8.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_3899 -2.6 -13.0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2822 -2.6 -5.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2753 -2.6 -3.0 HtrA protease/chaperone protein compare
Pf6N2E2_2318 -2.5 -20.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5291 -2.4 -14.9 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2474 -2.4 -10.5 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3808 -2.3 -4.9 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) compare
Pf6N2E2_5073 -2.3 -6.9 Large-conductance mechanosensitive channel compare
Pf6N2E2_3088 -2.3 -1.4 hypothetical protein compare
Pf6N2E2_4762 -2.2 -1.5 Biotin synthesis protein BioH compare
Pf6N2E2_2317 -2.2 -5.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2217 -2.2 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3264 -2.2 -7.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2320 -2.2 -12.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3656 -2.2 -14.5 Probable transcription regulator Mig-14 compare
Pf6N2E2_4907 -2.1 -13.6 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_5679 -2.1 -4.5 hypothetical protein compare
Pf6N2E2_4471 -2.1 -6.6 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3171 -2.1 -0.8 hypothetical protein compare
Pf6N2E2_3480 -2.1 -0.8 Transcriptional regulator, ArsR family compare
Pf6N2E2_434 -2.1 -1.3 hypothetical protein compare
Pf6N2E2_4072 -2.0 -9.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3621 -2.0 -5.6 putative transporter, required for glycine utilization (from data) compare
Pf6N2E2_4075 -2.0 -10.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4472 -2.0 -10.3 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2139 -2.0 -4.1 Paraquat-inducible protein A compare
Pf6N2E2_5950 -2.0 -1.4 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3494 -2.0 -1.3 Acyl dehydratase compare
Pf6N2E2_3667 -2.0 -8.2 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_405 -1.9 -1.1 hypothetical protein compare
Pf6N2E2_3659 -1.9 -6.7 Protein fixF compare
Pf6N2E2_2578 -1.9 -1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_3984 -1.9 -11.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4083 -1.9 -2.2 hypothetical protein compare
Pf6N2E2_3687 -1.9 -1.2 FIG00959437: hypothetical protein compare
Pf6N2E2_4187 -1.8 -15.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3942 -1.8 -4.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5728 -1.8 -1.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2258 -1.8 -5.5 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5292 -1.8 -5.5 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_4052 -1.8 -0.7 FIG00955481: hypothetical protein compare
Pf6N2E2_2552 -1.7 -4.6 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3603 -1.7 -4.1 FIG003573: hypothetical protein compare
Pf6N2E2_3261 -1.7 -11.1 hypothetical protein compare
Pf6N2E2_6064 -1.7 -3.4 2-methylaconitate isomerase compare
Pf6N2E2_1435 -1.7 -2.2 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_5242 -1.7 -2.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_156 -1.7 -2.2 Carbon storage regulator compare
Pf6N2E2_4451 -1.7 -9.3 FIG139438: lipoprotein B compare
Pf6N2E2_2367 -1.7 -0.9 hypothetical protein compare
Pf6N2E2_4803 -1.7 -2.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2284 -1.7 -1.8 Cell division inhibitor-related protein compare
Pf6N2E2_919 -1.6 -1.1 FIG00954373: hypothetical protein compare
Pf6N2E2_2071 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_5262 -1.6 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_3003 -1.6 -1.1 Bacteriophage protein GP46 compare
Pf6N2E2_848 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_4279 -1.6 -10.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2292 -1.6 -1.1 Universal stress protein family COG0589 compare
Pf6N2E2_6062 -1.6 -1.8 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_2707 -1.5 -5.5 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_3037 -1.5 -7.3 RNA polymerase sigma factor RpoS compare
Pf6N2E2_5647 -1.5 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4453 -1.5 -10.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_453 -1.5 -1.0 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_1424 -1.5 -1.1 transcriptional regulator, TetR family compare
Pf6N2E2_5153 -1.5 -6.3 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_5052 -1.5 -0.6 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_1448 -1.5 -1.8 hypothetical protein compare
Pf6N2E2_48 -1.5 -1.0 FIG00955661: hypothetical protein compare
Pf6N2E2_5133 -1.5 -1.7 FIG00953980: hypothetical protein compare
Pf6N2E2_5084 -1.5 -6.6 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_4543 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_456 -1.5 -7.1 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) compare
Pf6N2E2_2795 -1.5 -0.9 putative exported protein compare
Pf6N2E2_2880 -1.4 -1.0 FIG00959696: hypothetical protein compare
Pf6N2E2_4160 -1.4 -0.6 Cytochrome c5 compare
Pf6N2E2_3499 -1.4 -2.0 Permeases of the major facilitator superfamily compare
Pf6N2E2_799 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_945 -1.4 -0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_5527 -1.4 -2.2 Cold shock protein CspC compare
Pf6N2E2_2778 -1.4 -0.9 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_1670 -1.4 -1.2 conserved membrane protein compare
Pf6N2E2_5097 -1.4 -0.9 FIG00953595: hypothetical protein compare
Pf6N2E2_3270 -1.4 -3.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1502 -1.3 -0.7 Two-component system regulatory protein compare
Pf6N2E2_671 -1.3 -1.2 2-methylaconitate racemase compare
Pf6N2E2_1603 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_1281 -1.3 -0.8 ATPase involved in DNA repair compare
Pf6N2E2_2034 -1.3 -0.9 Methyltransferase compare
Pf6N2E2_472 -1.3 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_229 -1.3 -1.5 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_2708 -1.3 -0.9 Lactam utilization protein LamB compare
Pf6N2E2_1754 -1.3 -0.8 FIG00731982: hypothetical protein compare
Pf6N2E2_6065 -1.3 -0.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_479 -1.3 -3.1 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_1501 -1.3 -0.8 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_1412 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_1875 -1.3 -0.8 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2844 -1.3 -1.2 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_906 -1.3 -0.8 ISPpu14, transposase Orf2 compare
Pf6N2E2_3349 -1.3 -0.9 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2871 -1.3 -0.8 FIG00954271: hypothetical protein compare
Pf6N2E2_3424 -1.3 -4.2 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_1248 -1.3 -0.8 MutT/nudix family protein compare
Pf6N2E2_2447 -1.3 -4.6 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3428 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_497 -1.3 -1.5 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf6N2E2_5500 -1.3 -0.8 MoxR-like ATPases compare
Pf6N2E2_2656 -1.3 -1.4 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_2062 -1.3 -0.7 FIG00955561: hypothetical protein compare
Pf6N2E2_1028 -1.3 -0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_5704 -1.3 -0.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2300 -1.3 -1.8 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_4084 -1.3 -9.8 Transcriptional regulator compare
Pf6N2E2_4415 -1.3 -0.8 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_5178 -1.3 -1.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_1776 -1.3 -0.8 Chemotaxis protein CheD compare
Pf6N2E2_904 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_5455 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_2513 -1.3 -0.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_1605 -1.3 -6.8 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_264 -1.3 -1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_1040 -1.2 -0.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_178 -1.2 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3550 -1.2 -0.8 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_1987 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_2988 -1.2 -1.2 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_4990 -1.2 -0.8 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_3557 -1.2 -0.7 Chaperone-modulator protein CbpM compare
Pf6N2E2_3234 -1.2 -1.1 mandelate racemase/muconate lactonizing enzyme family protein compare
Pf6N2E2_6040 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_4159 -1.2 -7.4 Cytochrome c4 compare
Pf6N2E2_70 -1.2 -3.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3568 -1.2 -0.8 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_2388 -1.2 -0.8 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_4556 -1.2 -1.1 FIG00953078: hypothetical protein compare
Pf6N2E2_2467 -1.2 -0.8 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_5665 -1.2 -7.8 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_2440 -1.2 -0.7 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_6061 -1.2 -8.8 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_3268 -1.2 -3.2 Ribosome hibernation protein YhbH compare
Pf6N2E2_74 -1.2 -0.7 DedD protein compare
Pf6N2E2_2933 -1.2 -1.3 hypothetical protein compare
Pf6N2E2_4440 -1.2 -2.4 Small-conductance mechanosensitive channel compare
Pf6N2E2_425 -1.2 -1.0 FIG00957304: hypothetical protein compare
Pf6N2E2_3138 -1.2 -3.4 YaeQ protein compare
Pf6N2E2_1147 -1.2 -2.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_1966 -1.2 -0.7 SAM-dependent methyltransferases compare
Pf6N2E2_1741 -1.2 -1.5 Transketolase, N-terminal section (EC 2.2.1.1) compare
Pf6N2E2_4068 -1.2 -9.2 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_5015 -1.2 -1.5 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_3720 -1.2 -0.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3763 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_4508 -1.2 -0.8 Transcriptional regulator, TetR family compare
Pf6N2E2_4479 -1.2 -0.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_3373 -1.2 -4.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2850 -1.2 -2.0 Transporter, LysE family compare
Pf6N2E2_5986 -1.2 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3201 -1.2 -1.7 Transcriptional regulator, MerR family compare
Pf6N2E2_3108 -1.1 -1.0 FIG00953405: hypothetical protein compare
Pf6N2E2_5843 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2858 -1.1 -1.9 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_4818 -1.1 -1.1 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_4458 -1.1 -1.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_2752 -1.1 -2.2 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5155 -1.1 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5553 -1.1 -2.9 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_5209 -1.1 -1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2282 -1.1 -2.0 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4074 -1.1 -8.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2253 -1.1 -4.0 hypothetical protein compare
Pf6N2E2_4258 -1.1 -1.3 FIG00953800: hypothetical protein compare
Pf6N2E2_5087 -1.1 -0.7 Transcription elongation factor GreB-related protein compare
Pf6N2E2_5340 -1.1 -7.6 Stringent starvation protein A compare
Pf6N2E2_5703 -1.1 -0.7 outer membrane protein H1 compare
Pf6N2E2_3591 -1.1 -1.2 NUDIX hydrolase compare
Pf6N2E2_5869 -1.1 -0.7 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_4763 -1.1 -1.3 Biotin synthesis protein BioC compare
Pf6N2E2_603 -1.1 -1.2 FIG00953934: hypothetical protein compare
Pf6N2E2_4761 -1.1 -1.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_617 -1.1 -1.6 Probable glutathione S-transferase compare
Pf6N2E2_3100 -1.1 -2.4 FIG00953063: hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Ying_AminoAcid20 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_AminoAcid20 across organisms