Experiment set25S541 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_AminoAcid20 rep B; time point 3

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_2597 +1.8 10.4 Flagellar regulatory protein FleQ compare
Pf6N2E2_5695 +1.7 6.5 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2594 +1.7 8.2 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_2593 +1.7 5.8 Flagellar M-ring protein FliF compare
Pf6N2E2_2592 +1.7 6.1 Flagellar motor switch protein FliG compare
Pf6N2E2_2755 +1.6 3.9 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2590 +1.6 8.4 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_962 +1.6 1.5 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_2794 +1.5 0.7 putative membrane protein compare
Pf6N2E2_4181 +1.5 0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_4153 +1.5 7.4 Sensory box histidine kinase compare
Pf6N2E2_2628 +1.5 6.5 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_2579 +1.5 4.7 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_2788 +1.5 1.0 Transcriptional regulator, AsnC family compare
Pf6N2E2_5691 +1.4 8.0 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_2576 +1.3 7.9 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_2675 +1.3 0.5 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2585 +1.3 7.1 Flagellar hook-length control protein FliK compare
Pf6N2E2_2626 +1.3 6.5 Flagellar L-ring protein FlgH compare
Pf6N2E2_2627 +1.3 6.0 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_2583 +1.3 5.3 Flagellar motor switch protein FliM compare
Pf6N2E2_5697 +1.2 8.4 Flagellar hook protein FlgE compare
Pf6N2E2_2589 +1.2 3.6 Flagellar protein FliJ compare
Pf6N2E2_2674 +1.2 0.6 FIG00953856: hypothetical protein compare
Pf6N2E2_3326 +1.2 1.2 hypothetical protein compare
Pf6N2E2_2563 +1.1 7.9 FIG00953562: hypothetical protein compare
Pf6N2E2_3033 +1.1 1.2 hypothetical protein compare
Pf6N2E2_2624 +1.1 4.8 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_3588 +1.1 1.7 hypothetical protein compare
Pf6N2E2_4773 +1.1 1.2 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_69 +1.1 5.8 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_2577 +1.1 6.0 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_841 +1.1 1.9 hypothetical protein compare
Pf6N2E2_4025 +1.1 1.2 hypothetical protein compare
Pf6N2E2_5694 +1.0 4.0 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_2625 +1.0 2.6 Flagellar P-ring protein FlgI compare
Pf6N2E2_2321 +1.0 4.5 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf6N2E2_3635 +1.0 1.6 FIG00953138: hypothetical protein compare
Pf6N2E2_3226 +1.0 1.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_958 +0.9 1.9 hypothetical protein compare
Pf6N2E2_5840 +0.9 2.2 hypothetical protein compare
Pf6N2E2_5696 +0.9 3.0 Flagellar basal-body rod modification protein FlgD compare
Pf6N2E2_2546 +0.9 1.5 Carbon storage regulator compare
Pf6N2E2_1735 +0.9 1.0 PhnB protein compare
Pf6N2E2_693 +0.8 0.9 hypothetical protein compare
Pf6N2E2_1352 +0.8 0.8 Cation transport ATPase compare
Pf6N2E2_2588 +0.8 1.0 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_1718 +0.8 2.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_2584 +0.8 3.4 Flagellar biosynthesis protein FliL compare
Pf6N2E2_5906 +0.8 1.2 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_719 +0.8 0.7 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_5785 +0.8 2.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_664 +0.8 1.6 Acetoin catabolism protein X compare
Pf6N2E2_2573 +0.8 3.7 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_3338 +0.8 0.8 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_718 +0.8 0.9 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_1279 +0.8 1.2 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_493 +0.8 1.7 YD repeat protein compare
Pf6N2E2_724 +0.7 0.5 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_114 +0.7 1.4 Polysaccharide biosynthesis protein compare
Pf6N2E2_4307 +0.7 0.9 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_5237 +0.7 1.0 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_3737 +0.7 0.5 General secretion pathway protein M compare
Pf6N2E2_704 +0.7 0.8 Cytochrome c551/c552 compare
Pf6N2E2_2568 +0.7 3.4 Flagellar motor rotation protein MotA compare
Pf6N2E2_2575 +0.7 2.9 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_2623 +0.7 5.0 Flagellar hook-associated protein FlgK compare
Pf6N2E2_3793 +0.7 2.6 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Pf6N2E2_3641 +0.7 1.2 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_1834 +0.6 0.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_148 +0.6 3.4 Membrane fusion component of tripartite multidrug resistance system compare
Pf6N2E2_2852 +0.6 4.8 GGDEF domain/EAL domain protein compare
Pf6N2E2_2596 +0.6 3.6 Flagellar sensor histidine kinase FleS compare
Pf6N2E2_2526 +0.6 2.6 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_1385 +0.6 1.8 FIG00956261: hypothetical protein compare
Pf6N2E2_2420 +0.6 0.6 hypothetical protein compare
Pf6N2E2_5761 +0.6 0.8 Transcriptional regulator, TetR family compare
Pf6N2E2_733 +0.6 1.6 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_4359 +0.6 2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4678 +0.6 0.5 hypothetical protein compare
Pf6N2E2_1011 +0.6 0.5 hypothetical protein compare
Pf6N2E2_5174 +0.6 1.5 Glycosyltransferase compare
Pf6N2E2_5344 +0.6 3.1 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
Pf6N2E2_1665 +0.6 1.0 hypothetical protein compare
Pf6N2E2_817 +0.6 3.9 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_5061 +0.6 2.7 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) compare
Pf6N2E2_147 +0.6 3.5 Outer membrane component of tripartite multidrug resistance system compare
Pf6N2E2_1303 +0.6 1.0 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_3753 +0.6 4.3 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_145 +0.6 5.4 putative exported protein compare
Pf6N2E2_3432 +0.6 1.3 Ais protein, putative compare
Pf6N2E2_149 +0.6 2.9 Inner membrane component of tripartite multidrug resistance system compare
Pf6N2E2_88 +0.6 1.3 hypothetical protein compare
Pf6N2E2_987 +0.6 0.7 hypothetical protein compare
Pf6N2E2_4916 +0.6 1.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3709 +0.6 3.1 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2712 +0.5 2.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_1885 +0.5 0.7 Transcriptional regulator, AraC family compare
Pf6N2E2_423 +0.5 0.9 Putative phosphatase YfbT compare
Pf6N2E2_4810 +0.5 3.4 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_3537 +0.5 1.1 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1886 +0.5 1.1 hypothetical protein compare
Pf6N2E2_2092 +0.5 1.7 Cytochrome c5 compare
Pf6N2E2_5589 +0.5 2.9 Sodium-type flagellar protein motY precursor compare
Pf6N2E2_4551 +0.5 2.8 hypothetical protein compare
Pf6N2E2_3122 +0.5 0.7 Chemotaxis signal transduction protein compare
Pf6N2E2_1199 +0.5 1.1 hypothetical protein compare
Pf6N2E2_5571 +0.5 0.4 hypothetical protein compare
Pf6N2E2_773 +0.5 2.2 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_5468 +0.5 1.6 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_2223 +0.5 1.4 hypothetical protein compare
Pf6N2E2_3406 +0.5 0.9 putative ABC transporter ATP-binding protein compare
Pf6N2E2_746 +0.5 1.2 FIG00958097: hypothetical protein compare
Pf6N2E2_1808 +0.5 1.3 Transcriptional regulator compare
Pf6N2E2_5044 +0.5 0.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4405 +0.5 3.4 sensor histidine kinase compare
Pf6N2E2_630 +0.5 0.9 Epimerase KguE compare
Pf6N2E2_692 +0.5 1.0 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_4061 +0.5 2.3 Rubredoxin compare
Pf6N2E2_3611 +0.5 0.5 HflC protein compare
Pf6N2E2_3969 +0.5 2.2 Membrane-fusion protein compare
Pf6N2E2_2566 +0.5 3.2 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_144 +0.5 4.3 Uncharacterized protein YtfM precursor compare
Pf6N2E2_1340 +0.5 1.3 major pilin protein fimA compare
Pf6N2E2_1802 +0.5 1.2 polysaccharide deacetylase compare
Pf6N2E2_888 +0.5 0.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2180 +0.5 2.3 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4838 +0.5 3.4 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_1870 +0.5 0.6 hypothetical protein compare
Pf6N2E2_4148 +0.5 4.5 Glutamate-aspartate carrier protein compare
Pf6N2E2_1168 +0.5 1.1 Transposase compare
Pf6N2E2_474 +0.5 1.3 Transcriptional regulator, ArsR family compare
Pf6N2E2_331 +0.5 0.8 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_777 +0.5 1.1 FMN-dependent NADH-azoreductase compare
Pf6N2E2_678 +0.5 2.3 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare
Pf6N2E2_2350 +0.5 0.6 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_1408 +0.5 1.8 Nitrous oxide reductase maturation protein NosR compare
Pf6N2E2_2789 +0.5 2.2 L-lysine permease compare
Pf6N2E2_884 +0.5 1.2 Inosose isomerase (EC 5.3.99.-) compare
Pf6N2E2_5613 +0.5 0.8 FIG00953674: hypothetical protein compare
Pf6N2E2_2418 +0.5 1.3 DNA-binding response regulator, LuxR family compare
Pf6N2E2_4688 +0.4 1.6 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare
Pf6N2E2_583 +0.4 2.9 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_2710 +0.4 2.8 FIG00953701: hypothetical protein compare
Pf6N2E2_5576 +0.4 0.6 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_2580 +0.4 0.7 Flagellar biosynthesis protein FliP compare
Pf6N2E2_667 +0.4 2.3 Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-) compare
Pf6N2E2_3791 +0.4 3.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1450 +0.4 1.9 FIG00960438: hypothetical protein compare
Pf6N2E2_3018 +0.4 2.1 FIG00955390: hypothetical protein compare
Pf6N2E2_557 +0.4 1.9 Uncharacterized protein homologous to Paeru. PA2364 compare
Pf6N2E2_4554 +0.4 3.0 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_1916 +0.4 0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_442 +0.4 1.5 FIG00962345: hypothetical protein compare
Pf6N2E2_586 +0.4 2.8 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_1347 +0.4 0.5 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_2600 +0.4 3.3 Flagellar hook-associated protein FliD compare
Pf6N2E2_4470 +0.4 3.2 Flagellar biosynthesis protein FliL compare
Pf6N2E2_2411 +0.4 2.0 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Pf6N2E2_5757 +0.4 1.3 hypothetical protein compare
Pf6N2E2_3996 +0.4 2.0 Transcriptional regulator, AraC family compare
Pf6N2E2_4538 +0.4 2.0 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_5963 +0.4 1.8 lipoprotein, putative compare
Pf6N2E2_1014 +0.4 0.5 Nitrate/nitrite transporter compare
Pf6N2E2_5568 +0.4 2.7 Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4) compare
Pf6N2E2_4345 +0.4 1.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_403 +0.4 0.5 Cyanate hydratase (EC 4.2.1.104) compare
Pf6N2E2_629 +0.4 1.1 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_5414 +0.4 3.3 Nucleoid-associated protein compare
Pf6N2E2_6067 +0.4 1.0 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf6N2E2_1983 +0.4 0.6 hypothetical protein compare
Pf6N2E2_5672 +0.4 1.0 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Pf6N2E2_5425 +0.4 0.6 hypothetical protein compare
Pf6N2E2_2622 +0.4 3.3 Flagellar hook-associated protein FlgL compare
Pf6N2E2_2179 +0.4 2.6 Putrescine importer compare
Pf6N2E2_2007 +0.4 1.7 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_3981 +0.4 3.4 T1SS secreted agglutinin RTX compare
Pf6N2E2_1152 +0.4 0.4 hypothetical protein compare
Pf6N2E2_1863 +0.4 1.3 putative dioxygenase hydroxylase component compare
Pf6N2E2_3617 +0.4 0.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1838 +0.4 0.5 6-hexanolactone hydrolase compare
Pf6N2E2_3597 +0.4 0.8 hypothetical protein compare
Pf6N2E2_1783 +0.4 1.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_6100 +0.4 0.6 tRNA-Val-TAC compare
Pf6N2E2_2018 +0.4 0.5 hypothetical protein compare
Pf6N2E2_2129 +0.4 1.8 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_1746 +0.4 0.7 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_1492 +0.4 2.1 No significant database matches compare
Pf6N2E2_5627 +0.4 1.3 Segregation and condensation protein A compare
Pf6N2E2_3397 +0.4 1.0 Phage protein compare
Pf6N2E2_4747 +0.4 1.0 Transmembrane sensor compare
Pf6N2E2_3130 +0.4 2.2 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_766 +0.4 0.6 Fap protein with C39 domain compare
Pf6N2E2_3448 +0.4 1.5 membrane protein, putative compare
Pf6N2E2_3562 +0.4 2.1 Lipase precursor (EC 3.1.1.3) compare
Pf6N2E2_5658 +0.4 2.0 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit compare
Pf6N2E2_3706 +0.4 2.4 Putative polysaccharide deacetylase compare
Pf6N2E2_971 +0.4 2.1 hypothetical protein compare
Pf6N2E2_576 +0.4 1.4 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf6N2E2_4831 +0.4 1.7 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Ying_AminoAcid20 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_AminoAcid20 across organisms