Experiment set25S540 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_AminoAcid20 rep A; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5339 -6.4 -19.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5338 -6.2 -25.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5337 -5.7 -20.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2277 -5.3 -3.6 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3248 -5.1 -4.7 Probable transmembrane protein compare
Pf6N2E2_3271 -4.8 -6.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3786 -4.2 -10.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_3785 -3.9 -10.9 Twin-arginine translocation protein TatB compare
Pf6N2E2_4351 -3.5 -17.4 Predicted signal transduction protein compare
Pf6N2E2_3665 -3.2 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3645 -3.2 -8.7 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_3782 -3.1 -8.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5242 -3.0 -2.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3661 -2.9 -16.2 hypothetical protein compare
Pf6N2E2_3346 -2.7 -8.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_3932 -2.7 -3.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4473 -2.6 -8.2 HlyD family secretion protein compare
Pf6N2E2_482 -2.5 -1.6 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_3899 -2.5 -12.6 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2753 -2.5 -3.3 HtrA protease/chaperone protein compare
Pf6N2E2_5291 -2.4 -13.5 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2474 -2.4 -10.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5073 -2.4 -6.5 Large-conductance mechanosensitive channel compare
Pf6N2E2_2318 -2.4 -20.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2081 -2.4 -1.6 putative exported protein compare
Pf6N2E2_5679 -2.3 -4.8 hypothetical protein compare
Pf6N2E2_2822 -2.3 -5.7 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3808 -2.3 -4.3 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) compare
Pf6N2E2_3621 -2.2 -4.2 putative transporter, required for glycine utilization (from data) compare
Pf6N2E2_2561 -2.2 -1.4 FIG00955434: hypothetical protein compare
Pf6N2E2_4762 -2.2 -1.4 Biotin synthesis protein BioH compare
Pf6N2E2_2217 -2.2 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2447 -2.2 -7.8 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3656 -2.1 -14.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_5292 -2.1 -5.3 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_4472 -2.1 -10.6 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2258 -2.1 -3.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2139 -2.1 -4.0 Paraquat-inducible protein A compare
Pf6N2E2_4907 -2.1 -13.1 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_4471 -2.0 -5.5 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2707 -2.0 -5.8 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_5527 -2.0 -1.4 Cold shock protein CspC compare
Pf6N2E2_434 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_3264 -2.0 -9.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2320 -2.0 -10.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4279 -1.9 -10.6 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5950 -1.9 -1.9 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2284 -1.9 -1.8 Cell division inhibitor-related protein compare
Pf6N2E2_4075 -1.9 -10.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5153 -1.9 -6.4 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_405 -1.9 -1.1 hypothetical protein compare
Pf6N2E2_3828 -1.9 -1.2 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_2578 -1.8 -1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_3687 -1.8 -1.2 FIG00959437: hypothetical protein compare
Pf6N2E2_2473 -1.8 -0.8 Major outer membrane lipoprotein I compare
Pf6N2E2_4451 -1.8 -9.9 FIG139438: lipoprotein B compare
Pf6N2E2_4459 -1.8 -1.1 Transcriptional regulator, GntR family compare
Pf6N2E2_4187 -1.8 -15.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3293 -1.8 -2.0 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_2317 -1.8 -5.4 Putative analog of CcoH, COG3198 compare
Pf6N2E2_479 -1.8 -3.2 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_5728 -1.8 -1.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5084 -1.7 -6.3 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_3667 -1.7 -7.5 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_1236 -1.7 -1.1 Transcriptional regulator, LysR family compare
Pf6N2E2_3942 -1.7 -3.5 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3261 -1.7 -11.5 hypothetical protein compare
Pf6N2E2_4453 -1.7 -10.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4803 -1.7 -2.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4052 -1.7 -0.7 FIG00955481: hypothetical protein compare
Pf6N2E2_4836 -1.7 -7.6 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Pf6N2E2_3060 -1.7 -3.8 Outer membrane protein H precursor compare
Pf6N2E2_70 -1.7 -4.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3659 -1.7 -6.8 Protein fixF compare
Pf6N2E2_2367 -1.7 -0.9 hypothetical protein compare
Pf6N2E2_6064 -1.6 -3.4 2-methylaconitate isomerase compare
Pf6N2E2_3603 -1.6 -2.7 FIG003573: hypothetical protein compare
Pf6N2E2_3984 -1.6 -10.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2292 -1.6 -1.0 Universal stress protein family COG0589 compare
Pf6N2E2_2552 -1.5 -3.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4068 -1.5 -10.9 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_453 -1.5 -0.9 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_4278 -1.5 -8.3 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3270 -1.5 -3.4 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3277 -1.5 -0.9 FagA protein compare
Pf6N2E2_3014 -1.5 -1.6 P2-like prophage tail protein X compare
Pf6N2E2_2296 -1.5 -1.3 FIG00954767: hypothetical protein compare
Pf6N2E2_5052 -1.5 -0.6 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_5340 -1.4 -8.3 Stringent starvation protein A compare
Pf6N2E2_4543 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_2188 -1.4 -1.6 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_3037 -1.4 -6.6 RNA polymerase sigma factor RpoS compare
Pf6N2E2_4072 -1.4 -6.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2844 -1.4 -1.0 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_1759 -1.4 -1.3 uncharacterized domain 1 compare
Pf6N2E2_5553 -1.4 -3.0 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_848 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_4070 -1.4 -1.8 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_5015 -1.4 -1.3 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_6062 -1.4 -2.0 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_4160 -1.4 -0.6 Cytochrome c5 compare
Pf6N2E2_3727 -1.4 -1.2 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_799 -1.4 -0.8 hypothetical protein compare
Pf6N2E2_3255 -1.4 -1.8 YrbA protein compare
Pf6N2E2_945 -1.4 -0.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2778 -1.4 -0.9 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_156 -1.3 -1.9 Carbon storage regulator compare
Pf6N2E2_4083 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_295 -1.3 -0.9 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_1603 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_3015 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_1501 -1.3 -0.8 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_477 -1.3 -2.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_1281 -1.3 -0.8 ATPase involved in DNA repair compare
Pf6N2E2_1379 -1.3 -1.7 Sensory box histidine kinase/response regulator compare
Pf6N2E2_2534 -1.3 -1.2 Cell division protein BolA compare
Pf6N2E2_1754 -1.3 -0.8 FIG00731982: hypothetical protein compare
Pf6N2E2_1248 -1.3 -0.8 MutT/nudix family protein compare
Pf6N2E2_1875 -1.3 -0.8 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_1506 -1.3 -1.1 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_5964 -1.3 -1.2 FIG003620: Proteophosphoglycan precursor (Fragment) compare
Pf6N2E2_1741 -1.3 -1.4 Transketolase, N-terminal section (EC 2.2.1.1) compare
Pf6N2E2_1696 -1.3 -2.0 Alkanesulfonates-binding protein compare
Pf6N2E2_472 -1.3 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_6065 -1.3 -0.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_5500 -1.3 -0.8 MoxR-like ATPases compare
Pf6N2E2_1028 -1.3 -0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_906 -1.3 -0.8 ISPpu14, transposase Orf2 compare
Pf6N2E2_2324 -1.3 -1.4 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_4084 -1.3 -9.9 Transcriptional regulator compare
Pf6N2E2_2871 -1.3 -0.8 FIG00954271: hypothetical protein compare
Pf6N2E2_5704 -1.2 -0.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_3349 -1.2 -0.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2513 -1.2 -0.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_1776 -1.2 -0.7 Chemotaxis protein CheD compare
Pf6N2E2_5455 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_1040 -1.2 -0.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4458 -1.2 -1.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_5178 -1.2 -1.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3778 -1.2 -1.9 FIG00954300: hypothetical protein compare
Pf6N2E2_5665 -1.2 -7.7 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_2080 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_4074 -1.2 -9.4 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_4171 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_6061 -1.2 -8.1 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_2264 -1.2 -1.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3557 -1.2 -0.7 Chaperone-modulator protein CbpM compare
Pf6N2E2_1987 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_3550 -1.2 -0.8 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_1147 -1.2 -3.1 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_178 -1.2 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_669 -1.2 -1.5 Nuclease inhibitor compare
Pf6N2E2_3610 -1.2 -2.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3568 -1.2 -0.7 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_2467 -1.2 -0.7 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_2388 -1.2 -0.8 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_5023 -1.2 -1.5 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_37 -1.2 -1.5 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_5262 -1.2 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_1404 -1.2 -1.4 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_4696 -1.2 -1.3 FIG00953108: hypothetical protein compare
Pf6N2E2_1396 -1.2 -1.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_5453 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_3720 -1.1 -0.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3763 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_74 -1.1 -0.7 DedD protein compare
Pf6N2E2_2708 -1.1 -1.0 Lactam utilization protein LamB compare
Pf6N2E2_289 -1.1 -6.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5155 -1.1 -3.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4454 -1.1 -4.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3283 -1.1 -4.8 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_4508 -1.1 -0.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2719 -1.1 -2.4 FIG00961680: hypothetical protein compare
Pf6N2E2_4479 -1.1 -0.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_4761 -1.1 -0.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2927 -1.1 -1.7 Putative signal peptide protein compare
Pf6N2E2_4759 -1.1 -0.8 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5986 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5843 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_481 -1.1 -4.9 branched-chain alpha-ketoacid dehydrogenase, E1 component alpha subunit (EC 1.2.4.4) (from data) compare
Pf6N2E2_5780 -1.1 -3.8 Periplasmic protease compare
Pf6N2E2_4494 -1.1 -1.0 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_4283 -1.1 -1.7 Homocysteine S-methyltransferase (EC 2.1.1.10) compare
Pf6N2E2_2282 -1.1 -0.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5115 -1.1 -1.4 Type IV fimbrial biogenesis protein PilV compare
Pf6N2E2_5087 -1.1 -0.7 Transcription elongation factor GreB-related protein compare
Pf6N2E2_786 -1.1 -1.0 Type-1 fimbrial protein, A chain precursor compare
Pf6N2E2_4125 -1.1 -2.4 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake compare
Pf6N2E2_4680 -1.1 -1.3 HTH-type transcriptional regulator BetI compare
Pf6N2E2_3268 -1.1 -2.9 Ribosome hibernation protein YhbH compare
Pf6N2E2_4152 -1.1 -3.7 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_1249 -1.1 -0.9 Transcriptional regulator, AraC family compare
Pf6N2E2_2155 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_2074 -1.1 -3.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5097 -1.1 -0.9 FIG00953595: hypothetical protein compare
Pf6N2E2_1784 -1.1 -0.7 Methyl-accepting chemotaxis protein compare
Pf6N2E2_5869 -1.1 -0.6 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_4440 -1.1 -2.2 Small-conductance mechanosensitive channel compare
Pf6N2E2_3179 -1.0 -0.7 FIG021952: putative membrane protein compare
Pf6N2E2_2636 -1.0 -0.7 FIG027190: Putative transmembrane protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Ying_AminoAcid20 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_AminoAcid20 across organisms