Experiment set25S536 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_all64 rep C; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -3.6 -9.0 Probable transmembrane protein compare
Pf6N2E2_3665 -3.2 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3667 -3.0 -6.8 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3661 -3.0 -16.8 hypothetical protein compare
Pf6N2E2_3844 -2.9 -2.0 hypothetical protein compare
Pf6N2E2_64 -2.8 -1.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3264 -2.7 -6.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3271 -2.6 -6.0 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4187 -2.6 -23.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3645 -2.6 -12.8 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_5073 -2.5 -6.3 Large-conductance mechanosensitive channel compare
Pf6N2E2_2753 -2.4 -1.7 HtrA protease/chaperone protein compare
Pf6N2E2_2139 -2.4 -3.8 Paraquat-inducible protein A compare
Pf6N2E2_4473 -2.3 -11.0 HlyD family secretion protein compare
Pf6N2E2_3932 -2.2 -3.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2474 -2.2 -10.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_603 -2.2 -1.5 FIG00953934: hypothetical protein compare
Pf6N2E2_4075 -2.2 -11.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5242 -2.2 -2.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4059 -2.1 -0.9 DNA-binding protein HU-alpha compare
Pf6N2E2_434 -2.1 -1.3 hypothetical protein compare
Pf6N2E2_3261 -2.1 -14.8 hypothetical protein compare
Pf6N2E2_3171 -2.0 -0.8 hypothetical protein compare
Pf6N2E2_5679 -2.0 -3.9 hypothetical protein compare
Pf6N2E2_3984 -2.0 -11.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4471 -1.9 -7.1 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5175 -1.9 -5.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4564 -1.9 -5.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4803 -1.9 -1.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3839 -1.9 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1650 -1.9 -4.9 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_4472 -1.9 -11.6 ABC-type multidrug transport system, permease component compare
Pf6N2E2_477 -1.9 -2.5 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_2822 -1.9 -6.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2578 -1.9 -1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_63 -1.9 -5.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2473 -1.8 -0.7 Major outer membrane lipoprotein I compare
Pf6N2E2_3687 -1.8 -1.2 FIG00959437: hypothetical protein compare
Pf6N2E2_3942 -1.8 -6.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_70 -1.7 -5.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2284 -1.7 -1.9 Cell division inhibitor-related protein compare
Pf6N2E2_754 -1.7 -1.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_4052 -1.7 -0.7 FIG00955481: hypothetical protein compare
Pf6N2E2_3782 -1.7 -6.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5177 -1.6 -6.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_2258 -1.6 -5.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2292 -1.6 -1.0 Universal stress protein family COG0589 compare
Pf6N2E2_264 -1.6 -1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_806 -1.6 -3.5 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_3656 -1.6 -11.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_5803 -1.6 -3.3 Allantoicase (EC 3.5.3.4) compare
Pf6N2E2_2885 -1.6 -7.6 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3108 -1.5 -1.0 FIG00953405: hypothetical protein compare
Pf6N2E2_5646 -1.5 -1.9 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_453 -1.5 -1.0 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_4458 -1.5 -1.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_48 -1.5 -1.0 FIG00955661: hypothetical protein compare
Pf6N2E2_1074 -1.5 -0.8 FIG00953356: hypothetical protein compare
Pf6N2E2_4072 -1.5 -7.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_66 -1.5 -5.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3014 -1.5 -1.7 P2-like prophage tail protein X compare
Pf6N2E2_1759 -1.5 -1.3 uncharacterized domain 1 compare
Pf6N2E2_3761 -1.5 -10.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_4543 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_5052 -1.4 -0.6 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_799 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_5272 -1.4 -1.6 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_2253 -1.4 -4.9 hypothetical protein compare
Pf6N2E2_3610 -1.4 -2.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2264 -1.4 -1.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1603 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_1281 -1.4 -0.9 ATPase involved in DNA repair compare
Pf6N2E2_1501 -1.4 -0.9 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_4160 -1.4 -0.5 Cytochrome c5 compare
Pf6N2E2_1435 -1.4 -2.1 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_1248 -1.4 -0.8 MutT/nudix family protein compare
Pf6N2E2_4678 -1.4 -0.8 hypothetical protein compare
Pf6N2E2_2778 -1.3 -0.9 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_1754 -1.3 -0.8 FIG00731982: hypothetical protein compare
Pf6N2E2_906 -1.3 -0.8 ISPpu14, transposase Orf2 compare
Pf6N2E2_2034 -1.3 -0.9 Methyltransferase compare
Pf6N2E2_1028 -1.3 -0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_4742 -1.3 -1.2 Glutathione S-transferase family protein compare
Pf6N2E2_2471 -1.3 -9.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_1875 -1.3 -0.8 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_472 -1.3 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_5097 -1.3 -0.9 FIG00953595: hypothetical protein compare
Pf6N2E2_4762 -1.3 -1.2 Biotin synthesis protein BioH compare
Pf6N2E2_2080 -1.3 -0.7 hypothetical protein compare
Pf6N2E2_6065 -1.3 -0.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2708 -1.3 -0.9 Lactam utilization protein LamB compare
Pf6N2E2_904 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_2277 -1.3 -3.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_1040 -1.3 -0.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5950 -1.3 -2.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_5704 -1.3 -0.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5500 -1.3 -0.8 MoxR-like ATPases compare
Pf6N2E2_5527 -1.3 -2.2 Cold shock protein CspC compare
Pf6N2E2_1776 -1.3 -0.8 Chemotaxis protein CheD compare
Pf6N2E2_2995 -1.3 -0.8 FIG00959768: hypothetical protein compare
Pf6N2E2_3253 -1.3 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2871 -1.3 -0.8 FIG00954271: hypothetical protein compare
Pf6N2E2_5340 -1.3 -8.8 Stringent starvation protein A compare
Pf6N2E2_4150 -1.3 -0.8 probable exported protein YPO0432 compare
Pf6N2E2_3170 -1.2 -6.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4415 -1.2 -0.8 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_4074 -1.2 -10.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_1987 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_5338 -1.2 -10.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_1012 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_5455 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_2513 -1.2 -0.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_178 -1.2 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5622 -1.2 -0.8 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_5805 -1.2 -3.7 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_2561 -1.2 -1.1 FIG00955434: hypothetical protein compare
Pf6N2E2_3603 -1.2 -4.2 FIG003573: hypothetical protein compare
Pf6N2E2_3349 -1.2 -0.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_451 -1.2 -0.7 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3428 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_280 -1.2 -1.3 hypothetical protein compare
Pf6N2E2_2440 -1.2 -0.7 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_5608 -1.2 -0.8 PAP2 superfamily protein compare
Pf6N2E2_4990 -1.2 -0.8 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_1966 -1.2 -0.7 SAM-dependent methyltransferases compare
Pf6N2E2_3252 -1.2 -3.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3630 -1.2 -6.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3268 -1.2 -3.1 Ribosome hibernation protein YhbH compare
Pf6N2E2_74 -1.2 -0.7 DedD protein compare
Pf6N2E2_3828 -1.2 -1.0 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_1379 -1.2 -1.8 Sensory box histidine kinase/response regulator compare
Pf6N2E2_6062 -1.2 -2.2 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_2388 -1.2 -0.8 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_2467 -1.2 -0.7 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_3550 -1.2 -0.7 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_5088 -1.2 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3557 -1.2 -0.7 Chaperone-modulator protein CbpM compare
Pf6N2E2_2929 -1.2 -1.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2217 -1.2 -1.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3568 -1.2 -0.7 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_4479 -1.1 -0.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_3424 -1.1 -3.3 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_1249 -1.1 -1.0 Transcriptional regulator, AraC family compare
Pf6N2E2_4448 -1.1 -0.7 probable P23 protein compare
Pf6N2E2_4467 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_4696 -1.1 -1.3 FIG00953108: hypothetical protein compare
Pf6N2E2_5986 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_956 -1.1 -1.2 FIG01210404: hypothetical protein compare
Pf6N2E2_1512 -1.1 -1.3 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_4508 -1.1 -0.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4494 -1.1 -1.0 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_405 -1.1 -0.8 hypothetical protein compare
Pf6N2E2_3607 -1.1 -4.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5843 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2656 -1.1 -1.4 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_4340 -1.1 -0.7 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf6N2E2_4070 -1.1 -1.7 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_4680 -1.1 -1.4 HTH-type transcriptional regulator BetI compare
Pf6N2E2_3982 -1.1 -1.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_2501 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_1396 -1.1 -1.5 ABC transporter, ATP-binding protein compare
Pf6N2E2_3720 -1.1 -0.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3763 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_1506 -1.1 -1.1 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_5153 -1.1 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_5291 -1.1 -9.4 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_1784 -1.1 -0.7 Methyl-accepting chemotaxis protein compare
Pf6N2E2_4718 -1.1 -5.7 Sarcosine oxidase beta subunit (EC 1.5.3.1) compare
Pf6N2E2_1741 -1.1 -1.5 Transketolase, N-terminal section (EC 2.2.1.1) compare
Pf6N2E2_5869 -1.1 -0.7 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_229 -1.1 -1.3 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_5339 -1.1 -7.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_1404 -1.1 -1.5 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_5337 -1.1 -6.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4546 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_3433 -1.1 -1.4 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_4279 -1.1 -7.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5087 -1.1 -0.7 Transcription elongation factor GreB-related protein compare
Pf6N2E2_4454 -1.1 -4.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_164 -1.1 -6.3 Ribose operon repressor compare
Pf6N2E2_2071 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_4177 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_2367 -1.0 -0.8 hypothetical protein compare
Pf6N2E2_572 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_2864 -1.0 -0.5 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_1445 -1.0 -0.6 Glutathione S-transferase compare
Pf6N2E2_4907 -1.0 -6.6 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_218 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_4005 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_663 -1.0 -1.3 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_4567 -1.0 -0.9 ThiJ/PfpI family protein compare
Pf6N2E2_2296 -1.0 -1.0 FIG00954767: hypothetical protein compare
Pf6N2E2_127 -1.0 -0.6 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_4727 -1.0 -1.3 Cold shock protein CspD compare
Pf6N2E2_658 -1.0 -4.7 sensor histidine kinase compare
Pf6N2E2_5150 -1.0 -1.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5015 -1.0 -1.4 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_3752 -1.0 -8.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4392 -1.0 -0.6 Translation initiation inhibitor compare
Pf6N2E2_650 -1.0 -1.0 General secretion pathway protein M compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Ying_all64 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_all64 across organisms