Experiment set25S535 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_all64 rep B; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3661 -3.3 -17.5 hypothetical protein compare
Pf6N2E2_3665 -3.2 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3248 -2.9 -9.2 Probable transmembrane protein compare
Pf6N2E2_3645 -2.9 -13.2 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_64 -2.8 -1.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3271 -2.7 -4.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3667 -2.7 -9.4 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3932 -2.7 -3.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_482 -2.6 -1.7 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_4187 -2.6 -20.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5073 -2.5 -6.4 Large-conductance mechanosensitive channel compare
Pf6N2E2_4473 -2.5 -10.4 HlyD family secretion protein compare
Pf6N2E2_4075 -2.5 -8.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2753 -2.5 -1.7 HtrA protease/chaperone protein compare
Pf6N2E2_2474 -2.4 -10.8 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4803 -2.3 -2.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3264 -2.2 -12.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4762 -2.2 -1.5 Biotin synthesis protein BioH compare
Pf6N2E2_477 -2.2 -2.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_5679 -2.2 -4.7 hypothetical protein compare
Pf6N2E2_3902 -2.1 -2.8 Ribosomal protein S6 glutaminyl transferase compare
Pf6N2E2_1650 -2.1 -4.7 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_4471 -2.1 -6.8 ABC-type multidrug transport system, permease component compare
Pf6N2E2_63 -2.1 -5.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_434 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_1435 -2.0 -2.3 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_2284 -2.0 -1.9 Cell division inhibitor-related protein compare
Pf6N2E2_5527 -2.0 -1.8 Cold shock protein CspC compare
Pf6N2E2_3261 -1.9 -15.5 hypothetical protein compare
Pf6N2E2_2822 -1.9 -6.2 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_5177 -1.9 -6.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5272 -1.9 -1.8 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_16 -1.9 -0.8 hypothetical protein compare
Pf6N2E2_2578 -1.9 -1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2473 -1.9 -0.8 Major outer membrane lipoprotein I compare
Pf6N2E2_3942 -1.8 -6.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4472 -1.8 -11.0 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3687 -1.8 -1.2 FIG00959437: hypothetical protein compare
Pf6N2E2_2139 -1.8 -4.1 Paraquat-inducible protein A compare
Pf6N2E2_1396 -1.8 -2.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_5803 -1.7 -3.6 Allantoicase (EC 3.5.3.4) compare
Pf6N2E2_2217 -1.7 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2885 -1.7 -7.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4052 -1.7 -0.7 FIG00955481: hypothetical protein compare
Pf6N2E2_2367 -1.7 -0.9 hypothetical protein compare
Pf6N2E2_5647 -1.7 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4598 -1.6 -1.9 COG1872 compare
Pf6N2E2_2292 -1.6 -1.1 Universal stress protein family COG0589 compare
Pf6N2E2_1424 -1.6 -1.2 transcriptional regulator, TetR family compare
Pf6N2E2_3984 -1.6 -10.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_806 -1.5 -3.4 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_3014 -1.5 -1.7 P2-like prophage tail protein X compare
Pf6N2E2_3761 -1.5 -10.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_66 -1.5 -5.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4072 -1.5 -7.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_1759 -1.5 -1.3 uncharacterized domain 1 compare
Pf6N2E2_453 -1.5 -0.9 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_48 -1.5 -0.9 FIG00955661: hypothetical protein compare
Pf6N2E2_5052 -1.5 -0.6 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_3426 -1.5 -2.3 Peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_4543 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_5175 -1.5 -5.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4564 -1.5 -4.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_1670 -1.5 -1.3 conserved membrane protein compare
Pf6N2E2_1033 -1.4 -1.3 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_945 -1.4 -0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_3253 -1.4 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_799 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_3782 -1.4 -7.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3100 -1.4 -2.8 FIG00953063: hypothetical protein compare
Pf6N2E2_5728 -1.4 -1.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4070 -1.4 -1.8 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_2106 -1.4 -0.7 hypothetical protein compare
Pf6N2E2_1603 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_4742 -1.4 -1.2 Glutathione S-transferase family protein compare
Pf6N2E2_4074 -1.4 -10.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_4160 -1.4 -0.6 Cytochrome c5 compare
Pf6N2E2_1281 -1.4 -0.9 ATPase involved in DNA repair compare
Pf6N2E2_2778 -1.4 -0.9 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_4907 -1.4 -10.0 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_1501 -1.4 -0.9 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_1754 -1.4 -0.9 FIG00731982: hypothetical protein compare
Pf6N2E2_1248 -1.3 -0.8 MutT/nudix family protein compare
Pf6N2E2_3630 -1.3 -7.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2857 -1.3 -1.5 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_1028 -1.3 -0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_2253 -1.3 -4.8 hypothetical protein compare
Pf6N2E2_1412 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_5345 -1.3 -3.3 LppC putative lipoprotein compare
Pf6N2E2_5097 -1.3 -0.9 FIG00953595: hypothetical protein compare
Pf6N2E2_2010 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_568 -1.3 -2.2 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) compare
Pf6N2E2_5500 -1.3 -0.8 MoxR-like ATPases compare
Pf6N2E2_1875 -1.3 -0.8 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_906 -1.3 -0.8 ISPpu14, transposase Orf2 compare
Pf6N2E2_6062 -1.3 -2.2 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_2708 -1.3 -0.9 Lactam utilization protein LamB compare
Pf6N2E2_2995 -1.3 -0.9 FIG00959768: hypothetical protein compare
Pf6N2E2_2844 -1.3 -1.2 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_6065 -1.3 -0.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1040 -1.3 -0.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5704 -1.3 -0.9 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2871 -1.3 -0.8 FIG00954271: hypothetical protein compare
Pf6N2E2_472 -1.3 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_1776 -1.3 -0.8 Chemotaxis protein CheD compare
Pf6N2E2_1805 -1.3 -1.8 Multidrug resistance protein B compare
Pf6N2E2_3951 -1.3 -2.1 Efflux transporter, RND family, MFP subunit compare
Pf6N2E2_2440 -1.3 -0.7 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_5622 -1.3 -0.8 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_5455 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_3656 -1.3 -8.4 Probable transcription regulator Mig-14 compare
Pf6N2E2_5292 -1.3 -5.2 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_2561 -1.2 -1.1 FIG00955434: hypothetical protein compare
Pf6N2E2_5761 -1.2 -1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_2324 -1.2 -1.5 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_4415 -1.2 -0.8 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_1987 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_3349 -1.2 -0.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4779 -1.2 -1.1 Transcriptional regulator, AsnC family compare
Pf6N2E2_5666 -1.2 -3.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_178 -1.2 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2388 -1.2 -0.8 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_2467 -1.2 -0.8 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_2988 -1.2 -1.1 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_5340 -1.2 -8.6 Stringent starvation protein A compare
Pf6N2E2_3828 -1.2 -1.1 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_318 -1.2 -0.8 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_613 -1.2 -1.1 lipoprotein, putative compare
Pf6N2E2_5262 -1.2 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_451 -1.2 -0.7 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3557 -1.2 -0.7 Chaperone-modulator protein CbpM compare
Pf6N2E2_1966 -1.2 -0.7 SAM-dependent methyltransferases compare
Pf6N2E2_3550 -1.2 -0.7 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_5805 -1.2 -4.0 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_3568 -1.2 -0.7 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_2277 -1.2 -2.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3441 -1.2 -1.9 Gluconate transporter family protein compare
Pf6N2E2_848 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_74 -1.2 -0.7 DedD protein compare
Pf6N2E2_5950 -1.1 -2.1 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_1379 -1.1 -1.7 Sensory box histidine kinase/response regulator compare
Pf6N2E2_3170 -1.1 -6.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4508 -1.1 -0.8 Transcriptional regulator, TetR family compare
Pf6N2E2_3763 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_4479 -1.1 -0.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_3720 -1.1 -0.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3839 -1.1 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3666 -1.1 -4.7 InaA protein compare
Pf6N2E2_4494 -1.1 -1.0 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_3641 -1.1 -1.0 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_3004 -1.1 -1.6 Prophage baseplate assembly protein V compare
Pf6N2E2_5843 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_5986 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5115 -1.1 -1.4 Type IV fimbrial biogenesis protein PilV compare
Pf6N2E2_942 -1.1 -0.9 Mll6465 protein compare
Pf6N2E2_4696 -1.1 -1.2 FIG00953108: hypothetical protein compare
Pf6N2E2_3607 -1.1 -4.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4125 -1.1 -2.5 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake compare
Pf6N2E2_4818 -1.1 -1.0 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_4454 -1.1 -4.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_70 -1.1 -3.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5338 -1.1 -8.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3752 -1.1 -8.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4340 -1.1 -0.7 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf6N2E2_1741 -1.1 -1.5 Transketolase, N-terminal section (EC 2.2.1.1) compare
Pf6N2E2_2471 -1.1 -8.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4458 -1.1 -1.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_1784 -1.1 -0.7 Methyl-accepting chemotaxis protein compare
Pf6N2E2_5910 -1.1 -1.2 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_2752 -1.1 -1.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3268 -1.1 -3.0 Ribosome hibernation protein YhbH compare
Pf6N2E2_5337 -1.1 -7.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5087 -1.1 -0.7 Transcription elongation factor GreB-related protein compare
Pf6N2E2_5150 -1.1 -1.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3252 -1.1 -3.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5869 -1.1 -0.7 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_603 -1.1 -1.1 FIG00953934: hypothetical protein compare
Pf6N2E2_4451 -1.1 -6.9 FIG139438: lipoprotein B compare
Pf6N2E2_5316 -1.1 -1.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5736 -1.1 -1.5 FIG00961250: hypothetical protein compare
Pf6N2E2_229 -1.1 -1.3 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_5291 -1.1 -9.2 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_4761 -1.0 -1.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5339 -1.0 -7.1 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3179 -1.0 -0.7 FIG021952: putative membrane protein compare
Pf6N2E2_4763 -1.0 -1.2 Biotin synthesis protein BioC compare
Pf6N2E2_2088 -1.0 -0.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2864 -1.0 -0.6 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_4759 -1.0 -1.4 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4306 -1.0 -2.0 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_4717 -1.0 -6.3 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Pf6N2E2_572 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_5517 -1.0 -1.1 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_1584 -1.0 -0.9 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_5219 -1.0 -3.5 FIG140336: TPR domain protein compare
Pf6N2E2_3120 -1.0 -1.1 Chemotaxis signal transduction protein compare
Pf6N2E2_4574 -1.0 -1.8 FIG028932: hypothetical protein compare
Pf6N2E2_2152 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_658 -1.0 -4.6 sensor histidine kinase compare
Pf6N2E2_1316 -1.0 -1.9 P-hydroxyphenylacetate hydroxylase C1:reductase component compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Ying_all64 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_all64 across organisms