Experiment set25S534 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_all64 rep A; time point 3

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3271 -3.3 -7.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3665 -3.2 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3661 -3.1 -16.7 hypothetical protein compare
Pf6N2E2_3932 -2.8 -3.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3645 -2.8 -11.8 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_3667 -2.7 -5.9 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5073 -2.6 -6.1 Large-conductance mechanosensitive channel compare
Pf6N2E2_3264 -2.6 -13.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_482 -2.6 -1.7 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_4187 -2.5 -22.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4473 -2.5 -10.2 HlyD family secretion protein compare
Pf6N2E2_2753 -2.5 -2.4 HtrA protease/chaperone protein compare
Pf6N2E2_3248 -2.4 -5.9 Probable transmembrane protein compare
Pf6N2E2_2081 -2.4 -1.6 putative exported protein compare
Pf6N2E2_2474 -2.3 -10.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4075 -2.3 -10.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_63 -2.3 -4.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5679 -2.3 -4.7 hypothetical protein compare
Pf6N2E2_3088 -2.2 -1.4 hypothetical protein compare
Pf6N2E2_4803 -2.2 -1.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5177 -2.2 -6.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4762 -2.1 -1.4 Biotin synthesis protein BioH compare
Pf6N2E2_4059 -2.1 -0.9 DNA-binding protein HU-alpha compare
Pf6N2E2_1396 -2.1 -2.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_3261 -2.0 -15.0 hypothetical protein compare
Pf6N2E2_434 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_1650 -2.0 -4.4 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_3494 -1.9 -1.3 Acyl dehydratase compare
Pf6N2E2_4471 -1.9 -6.8 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3942 -1.9 -6.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5647 -1.9 -2.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2822 -1.9 -6.3 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_4472 -1.9 -10.9 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2578 -1.8 -1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2473 -1.8 -0.8 Major outer membrane lipoprotein I compare
Pf6N2E2_16 -1.8 -0.8 hypothetical protein compare
Pf6N2E2_64 -1.8 -2.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2139 -1.8 -4.1 Paraquat-inducible protein A compare
Pf6N2E2_3828 -1.8 -1.2 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_3687 -1.8 -1.2 FIG00959437: hypothetical protein compare
Pf6N2E2_1236 -1.8 -1.1 Transcriptional regulator, LysR family compare
Pf6N2E2_5175 -1.8 -5.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5527 -1.8 -2.0 Cold shock protein CspC compare
Pf6N2E2_5803 -1.8 -3.9 Allantoicase (EC 3.5.3.4) compare
Pf6N2E2_5345 -1.7 -3.9 LppC putative lipoprotein compare
Pf6N2E2_4072 -1.7 -8.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_806 -1.7 -3.7 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_2367 -1.7 -1.0 hypothetical protein compare
Pf6N2E2_5242 -1.7 -1.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_70 -1.7 -4.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4052 -1.6 -0.7 FIG00955481: hypothetical protein compare
Pf6N2E2_2071 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_2217 -1.6 -1.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2258 -1.6 -5.5 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_477 -1.6 -2.5 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_5950 -1.6 -2.7 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_5262 -1.6 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_3984 -1.5 -10.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3761 -1.5 -10.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_4564 -1.5 -5.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3656 -1.5 -9.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_453 -1.5 -0.9 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2919 -1.5 -1.8 FIG00955830: hypothetical protein compare
Pf6N2E2_1759 -1.5 -1.3 uncharacterized domain 1 compare
Pf6N2E2_3630 -1.5 -7.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3912 -1.5 -1.0 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_48 -1.4 -0.9 FIG00955661: hypothetical protein compare
Pf6N2E2_5052 -1.4 -0.6 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_3277 -1.4 -0.9 FagA protein compare
Pf6N2E2_2844 -1.4 -1.0 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_4543 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_945 -1.4 -0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_799 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_2121 -1.4 -3.0 hypothetical protein compare
Pf6N2E2_66 -1.4 -5.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3782 -1.4 -7.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2253 -1.4 -4.7 hypothetical protein compare
Pf6N2E2_1603 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_1501 -1.4 -0.9 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_4458 -1.4 -1.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_4074 -1.3 -10.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_1412 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_2778 -1.3 -0.9 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_5910 -1.3 -1.2 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_1281 -1.3 -0.8 ATPase involved in DNA repair compare
Pf6N2E2_4160 -1.3 -0.6 Cytochrome c5 compare
Pf6N2E2_1248 -1.3 -0.8 MutT/nudix family protein compare
Pf6N2E2_1506 -1.3 -1.2 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_1754 -1.3 -0.8 FIG00731982: hypothetical protein compare
Pf6N2E2_350 -1.3 -1.4 Gfa-like protein compare
Pf6N2E2_1028 -1.3 -0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_2010 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_906 -1.3 -0.8 ISPpu14, transposase Orf2 compare
Pf6N2E2_2885 -1.3 -5.8 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_472 -1.3 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_1875 -1.3 -0.8 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_638 -1.3 -0.8 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2471 -1.3 -9.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5964 -1.3 -1.2 FIG003620: Proteophosphoglycan precursor (Fragment) compare
Pf6N2E2_2708 -1.3 -0.8 Lactam utilization protein LamB compare
Pf6N2E2_6065 -1.3 -0.8 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_5704 -1.3 -0.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_1040 -1.3 -0.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5805 -1.3 -3.8 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_5229 -1.3 -1.8 Transcriptional regulator, MerR family, associated with photolyase compare
Pf6N2E2_497 -1.3 -1.6 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf6N2E2_669 -1.2 -1.6 Nuclease inhibitor compare
Pf6N2E2_1776 -1.2 -0.7 Chemotaxis protein CheD compare
Pf6N2E2_3610 -1.2 -2.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5622 -1.2 -0.8 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_1012 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_698 -1.2 -1.7 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_5455 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_473 -1.2 -0.8 putative cytochrome p450 oxidoreductase compare
Pf6N2E2_3349 -1.2 -0.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1987 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_4415 -1.2 -0.8 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_3428 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_4625 -1.2 -1.9 Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) compare
Pf6N2E2_650 -1.2 -1.1 General secretion pathway protein M compare
Pf6N2E2_1960 -1.2 -1.7 ABC transporter for D-sorbitol, ATPase component (from data) compare
Pf6N2E2_1683 -1.2 -1.3 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_5340 -1.2 -8.5 Stringent starvation protein A compare
Pf6N2E2_3825 -1.2 -1.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2988 -1.2 -1.1 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_2927 -1.2 -1.8 Putative signal peptide protein compare
Pf6N2E2_3557 -1.2 -0.7 Chaperone-modulator protein CbpM compare
Pf6N2E2_160 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_5755 -1.2 -1.7 FIG00956435: hypothetical protein compare
Pf6N2E2_2388 -1.2 -0.8 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_3550 -1.2 -0.7 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_2467 -1.2 -0.7 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_3666 -1.2 -4.4 InaA protein compare
Pf6N2E2_178 -1.2 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3568 -1.2 -0.7 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_4171 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_5023 -1.1 -1.5 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_1036 -1.1 -1.6 Biopolymer transport protein ExbD/TolR compare
Pf6N2E2_94 -1.1 -1.2 Cyn operon transcriptional activator compare
Pf6N2E2_5015 -1.1 -1.4 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_405 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_4727 -1.1 -1.3 Cold shock protein CspD compare
Pf6N2E2_3592 -1.1 -2.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_1670 -1.1 -1.2 conserved membrane protein compare
Pf6N2E2_74 -1.1 -0.7 DedD protein compare
Pf6N2E2_3720 -1.1 -0.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1980 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_3852 -1.1 -0.7 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Pf6N2E2_3763 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_5986 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2752 -1.1 -2.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4479 -1.1 -0.7 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_4448 -1.1 -0.7 probable P23 protein compare
Pf6N2E2_4508 -1.1 -0.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3902 -1.1 -2.2 Ribosomal protein S6 glutaminyl transferase compare
Pf6N2E2_5843 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_942 -1.1 -0.9 Mll6465 protein compare
Pf6N2E2_2535 -1.1 -2.7 FIG00954136: hypothetical protein compare
Pf6N2E2_4907 -1.1 -7.4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_2277 -1.1 -1.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3982 -1.1 -1.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_3440 -1.1 -2.9 Transcriptional regulator, RpiR family compare
Pf6N2E2_3498 -1.1 -1.0 FIG00953349: hypothetical protein compare
Pf6N2E2_416 -1.1 -1.6 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_6062 -1.1 -2.0 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_3752 -1.1 -8.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5339 -1.1 -7.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3659 -1.1 -7.2 Protein fixF compare
Pf6N2E2_1784 -1.1 -0.7 Methyl-accepting chemotaxis protein compare
Pf6N2E2_4381 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_3958 -1.1 -1.8 Putative stomatin/prohibitin-family membrane protease subunit aq_911 compare
Pf6N2E2_2897 -1.1 -6.3 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_5869 -1.1 -0.7 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_2728 -1.0 -1.5 SAM-dependent methyltransferases compare
Pf6N2E2_5291 -1.0 -9.0 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_5150 -1.0 -1.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4188 -1.0 -0.7 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_5087 -1.0 -0.7 Transcription elongation factor GreB-related protein compare
Pf6N2E2_5097 -1.0 -0.9 FIG00953595: hypothetical protein compare
Pf6N2E2_1039 -1.0 -1.1 Gluconolactonase compare
Pf6N2E2_3607 -1.0 -4.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3179 -1.0 -0.7 FIG021952: putative membrane protein compare
Pf6N2E2_3839 -1.0 -1.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_904 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_5272 -1.0 -1.3 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_2864 -1.0 -0.6 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_1379 -1.0 -1.6 Sensory box histidine kinase/response regulator compare
Pf6N2E2_658 -1.0 -4.8 sensor histidine kinase compare
Pf6N2E2_3253 -1.0 -4.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3170 -1.0 -5.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2306 -1.0 -1.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5338 -1.0 -7.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4145 -1.0 -1.2 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_4761 -1.0 -0.9 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_3751 -1.0 -7.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3897 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_572 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_136 -1.0 -1.1 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_4759 -1.0 -1.2 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3100 -1.0 -2.3 FIG00953063: hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Ying_all64 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_all64 across organisms