Experiment set25S5 for Pseudomonas fluorescens SBW25-INTG

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -4.1 -6.2 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02490 -3.8 -15.3 phosphoserine phosphatase SerB compare
PFLU_RS01625 -3.7 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01605 -3.5 -8.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20565 -3.5 -15.5 3-isopropylmalate dehydrogenase compare
PFLU_RS27365 -3.5 -12.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01620 -3.5 -8.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS24765 -3.5 -22.0 2-isopropylmalate synthase compare
PFLU_RS12980 -3.4 -7.6 nitrite/sulfite reductase compare
PFLU_RS28385 -3.4 -15.3 homoserine O-acetyltransferase compare
PFLU_RS28535 -3.4 -18.0 dihydroxy-acid dehydratase compare
PFLU_RS28390 -3.3 -13.1 methionine biosynthesis protein MetW compare
PFLU_RS00180 -3.3 -8.5 tryptophan synthase subunit beta compare
PFLU_RS20580 -3.3 -12.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS03970 -3.3 -13.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS03240 -3.3 -17.2 copper-translocating P-type ATPase compare
PFLU_RS29095 -3.2 -24.2 polyphosphate kinase 1 compare
PFLU_RS20510 -3.2 -13.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS25360 -3.2 -9.3 glutamate 5-kinase compare
PFLU_RS20540 -3.2 -11.1 phosphoribosylanthranilate isomerase compare
PFLU_RS27370 -3.2 -15.0 anthranilate phosphoribosyltransferase compare
PFLU_RS01610 -3.2 -11.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS25640 -3.1 -14.6 ketol-acid reductoisomerase compare
PFLU_RS22835 -3.1 -9.1 amidotransferase compare
PFLU_RS04470 -3.1 -13.1 histidinol dehydrogenase compare
PFLU_RS04465 -3.1 -11.0 ATP phosphoribosyltransferase compare
PFLU_RS29515 -3.0 -14.1 RidA family protein compare
PFLU_RS29880 -3.0 -16.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS28165 -3.0 -13.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08650 -2.9 -3.9 heme exporter protein CcmB compare
PFLU_RS01900 -2.9 -7.9 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS29875 -2.9 -17.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS29885 -2.8 -13.3 LysR family transcriptional regulator compare
PFLU_RS02590 -2.8 -11.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS18505 -2.8 -8.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24025 -2.8 -12.6 quinolinate synthase NadA compare
PFLU_RS00175 -2.8 -9.8 tryptophan synthase subunit alpha compare
PFLU_RS22190 -2.8 -1.4 hypothetical protein compare
PFLU_RS28695 -2.7 -9.6 phosphoglycerate dehydrogenase compare
PFLU_RS01895 -2.7 -8.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS07255 -2.6 -6.2 sulfurtransferase TusA family protein compare
PFLU_RS28655 -2.6 -13.9 HAD family hydrolase compare
PFLU_RS14050 -2.6 -2.7 hypothetical protein compare
PFLU_RS28645 -2.6 -14.7 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS23310 -2.6 -9.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS25645 -2.6 -3.5 acetolactate synthase small subunit compare
PFLU_RS12975 -2.6 -4.6 DUF934 domain-containing protein compare
PFLU_RS08655 -2.6 -4.5 heme ABC transporter permease compare
PFLU_RS09055 -2.5 -3.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS02670 -2.5 -5.5 hypothetical protein compare
PFLU_RS09535 -2.5 -1.9 TIGR03750 family conjugal transfer protein compare
PFLU_RS24325 -2.5 -13.7 glucokinase compare
PFLU_RS25750 -2.4 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS30900 -2.4 -2.4 hypothetical protein compare
PFLU_RS07225 -2.3 -15.0 L-aspartate oxidase compare
PFLU_RS11930 -2.3 -4.0 biopolymer transporter ExbD compare
PFLU_RS03665 -2.3 -6.3 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS26535 -2.3 -7.2 thiamine phosphate synthase compare
PFLU_RS24095 -2.3 -2.2 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS07695 -2.3 -3.7 beta-N-acetylhexosaminidase compare
PFLU_RS27650 -2.3 -14.6 biotin synthase BioB compare
PFLU_RS18655 -2.3 -1.5 NADH-quinone oxidoreductase subunit J compare
PFLU_RS00195 -2.2 -2.1 dodecin domain-containing protein compare
PFLU_RS07765 -2.2 -9.6 cupredoxin family protein compare
PFLU_RS18000 -2.2 -2.0 AhpC/TSA family protein compare
PFLU_RS17060 -2.2 -2.0 monooxygenase compare
PFLU_RS08660 -2.1 -3.9 heme exporter protein CcmD compare
PFLU_RS23305 -2.1 -10.1 arginine N-succinyltransferase compare
PFLU_RS18530 -2.1 -3.9 DNA translocase FtsK compare
PFLU_RS26530 -2.1 -13.3 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS22740 -2.1 -3.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS20660 -2.1 -11.6 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS16390 -2.1 -2.4 DUF411 domain-containing protein compare
PFLU_RS20515 -2.1 -5.3 amidophosphoribosyltransferase compare
PFLU_RS28420 -2.0 -8.6 thiazole synthase compare
PFLU_RS27640 -2.0 -1.6 alpha/beta fold hydrolase compare
PFLU_RS04330 -2.0 -13.9 TIGR02099 family protein compare
PFLU_RS25715 -2.0 -9.6 RNA polymerase-binding protein DksA compare
PFLU_RS28965 -2.0 -9.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS23585 -2.0 -8.6 GntP family permease compare
PFLU_RS06055 -2.0 -3.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS04435 -2.0 -6.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS14305 -1.9 -2.8 sensor histidine kinase compare
PFLU_RS27635 -1.9 -8.6 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS07275 -1.9 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS04445 -1.9 -5.9 ABC transporter substrate-binding protein compare
PFLU_RS15795 -1.9 -2.8 hypothetical protein compare
PFLU_RS04430 -1.9 -6.7 ATP-binding cassette domain-containing protein compare
PFLU_RS21855 -1.9 -7.8 flagellar basal-body rod protein FlgG compare
PFLU_RS27645 -1.9 -11.3 8-amino-7-oxononanoate synthase compare
PFLU_RS25595 -1.8 -1.3 exodeoxyribonuclease V subunit gamma compare
PFLU_RS23175 -1.8 -7.0 flagellar basal body rod protein FlgC compare
PFLU_RS22095 -1.8 -13.3 GTP diphosphokinase compare
PFLU_RS08675 -1.8 -3.9 DsbE family thiol:disulfide interchange protein compare
PFLU_RS22070 -1.8 -2.7 phosphoribosylglycinamide formyltransferase compare
PFLU_RS18395 -1.8 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS23195 -1.8 -11.8 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS01615 -1.8 -4.3 DUF2164 domain-containing protein compare
PFLU_RS21735 -1.8 -8.3 flagellar hook-length control protein FliK compare
PFLU_RS03770 -1.7 -10.4 sulfate adenylyltransferase subunit CysN compare
PFLU_RS27440 -1.7 -5.7 nucleotidyltransferase family protein compare
PFLU_RS18635 -1.7 -2.7 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS01965 -1.7 -1.6 ATP-dependent protease subunit HslV compare
PFLU_RS08065 -1.7 -7.3 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS13050 -1.7 -4.8 VWA domain-containing protein compare
PFLU_RS24590 -1.7 -3.2 cytochrome c assembly protein compare
PFLU_RS13045 -1.7 -5.4 AAA domain-containing protein compare
PFLU_RS21665 -1.7 -5.0 MinD/ParA family protein compare
PFLU_RS08670 -1.7 -6.3 heme lyase CcmF/NrfE family subunit compare
PFLU_RS25735 -1.7 -2.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS22600 -1.7 -1.1 RNA polymerase sigma factor SigX compare
PFLU_RS21495 -1.7 -1.1 TlpA family protein disulfide reductase compare
PFLU_RS03765 -1.6 -9.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS02430 -1.6 -11.0 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS08505 -1.6 -5.5 protease HtpX compare
PFLU_RS02990 -1.6 -5.5 precorrin-3B C(17)-methyltransferase compare
PFLU_RS21765 -1.6 -5.7 flagellar assembly protein FliH compare
PFLU_RS03610 -1.6 -4.7 redox-regulated ATPase YchF compare
PFLU_RS13020 -1.6 -3.8 cobalamin biosynthesis protein compare
PFLU_RS26905 -1.6 -8.1 transcriptional regulator NrdR compare
PFLU_RS07785 -1.6 -7.9 VacJ family lipoprotein compare
PFLU_RS31290 -1.6 -1.9 EamA family transporter compare
PFLU_RS24330 -1.6 -3.2 phosphogluconate dehydratase compare
PFLU_RS28195 -1.6 -11.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS02275 -1.6 -1.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS04440 -1.6 -7.3 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS26640 -1.6 -6.6 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS23745 -1.6 -6.0 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
PFLU_RS21805 -1.6 -9.9 flagellar export chaperone FliS compare
PFLU_RS06320 -1.6 -2.8 OmpH family outer membrane protein compare
PFLU_RS02565 -1.6 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS24790 -1.6 -4.5 tetratricopeptide repeat protein compare
PFLU_RS02775 -1.5 -1.3 urease accessory protein UreF compare
PFLU_RS24085 -1.5 -2.9 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS21925 -1.5 -3.6 YecA family protein compare
PFLU_RS00415 -1.5 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS13540 -1.5 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS21830 -1.5 -11.6 flagellar hook-associated protein 3 compare
PFLU_RS02970 -1.5 -5.0 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS12635 -1.5 -2.3 conjugal transfer protein TraR compare
PFLU_RS24785 -1.5 -8.2 outer membrane protein assembly factor BamB compare
PFLU_RS22735 -1.5 -8.3 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS18665 -1.5 -1.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS19015 -1.5 -6.7 anti-sigma factor compare
PFLU_RS21860 -1.5 -3.9 flagellar basal body rod protein FlgF compare
PFLU_RS24255 -1.4 -7.1 pyruvate kinase compare
PFLU_RS01660 -1.4 -2.6 rhodanese-like domain-containing protein compare
PFLU_RS22075 -1.4 -8.4 DUF3108 domain-containing protein compare
PFLU_RS31620 -1.4 -3.2 integrase compare
PFLU_RS08180 -1.4 -4.9 ketoacyl-ACP synthase III compare
PFLU_RS30525 -1.4 -7.8 SDR family oxidoreductase compare
PFLU_RS27445 -1.4 -10.2 phosphotransferase compare
PFLU_RS22360 -1.4 -11.1 cytochrome c oxidase accessory protein CcoG compare
PFLU_RS02975 -1.4 -6.3 precorrin-3B synthase compare
PFLU_RS18625 -1.4 -3.5 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS21810 -1.4 -11.1 flagellar filament capping protein FliD compare
PFLU_RS21845 -1.4 -6.5 flagellar basal body P-ring protein FlgI compare
PFLU_RS21705 -1.4 -4.8 flagellar biosynthesis protein FliQ compare
PFLU_RS07520 -1.4 -1.3 hypothetical protein compare
PFLU_RS29550 -1.4 -6.5 ATP-dependent DNA helicase RecG compare
PFLU_RS21850 -1.4 -8.3 flagellar basal body L-ring protein FlgH compare
PFLU_RS11470 -1.4 -3.5 hypothetical protein compare
PFLU_RS08185 -1.4 -7.9 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS15610 -1.4 -4.0 helix-turn-helix transcriptional regulator compare
PFLU_RS08410 -1.4 -5.4 HTH-type transcriptional regulator CysB compare
PFLU_RS21660 -1.4 -8.4 RNA polymerase sigma factor FliA compare
PFLU_RS26735 -1.4 -5.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS26635 -1.4 -3.9 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS23725 -1.4 -2.3 glucose-6-phosphate dehydrogenase compare
PFLU_RS21710 -1.4 -6.8 flagellar type III secretion system pore protein FliP compare
PFLU_RS23165 -1.4 -10.2 flagellar hook protein FlgE compare
PFLU_RS21795 -1.4 -10.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS23750 -1.4 -8.6 carbohydrate ABC transporter permease compare
PFLU_RS27630 -1.3 -4.4 dethiobiotin synthase compare
PFLU_RS21835 -1.3 -9.4 flagellar hook-associated protein FlgK compare
PFLU_RS22105 -1.3 -3.6 cysteine synthase CysM compare
PFLU_RS29900 -1.3 -8.2 DNA helicase II compare
PFLU_RS24335 -1.3 -9.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS21655 -1.3 -4.5 response regulator compare
PFLU_RS23065 -1.3 -7.3 phosphate acyltransferase PlsX compare
PFLU_RS28310 -1.3 -1.7 response regulator compare
PFLU_RS21615 -1.3 -6.5 chemotaxis protein CheW compare
PFLU_RS24860 -1.3 -2.8 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS14550 -1.3 -4.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS25925 -1.3 -2.2 RnfH family protein compare
PFLU_RS08665 -1.3 -3.9 cytochrome c maturation protein CcmE compare
PFLU_RS18620 -1.3 -2.6 NADH-quinone oxidoreductase subunit B compare
PFLU_RS12660 -1.3 -4.9 hypothetical protein compare
PFLU_RS29360 -1.3 -2.2 cytochrome c5 family protein compare
PFLU_RS24090 -1.3 -3.1 Holliday junction branch migration protein RuvA compare
PFLU_RS13010 -1.3 -3.6 Fe-S biogenesis protein NfuA compare
PFLU_RS22000 -1.3 -4.8 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS07235 -1.3 -2.6 sigma factor AlgU negative regulatory protein compare
PFLU_RS29310 -1.3 -1.2 accessory factor UbiK family protein compare
PFLU_RS21760 -1.3 -7.8 flagellar protein export ATPase FliI compare
PFLU_RS29065 -1.3 -1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS21215 -1.3 -1.4 YheU family protein compare
PFLU_RS21820 -1.3 -6.7 flagellin compare
PFLU_RS11490 -1.3 -1.9 ABC transporter ATP-binding protein compare
PFLU_RS19805 -1.3 -3.4 LysR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in carbon source experiments

For carbon source D-Glucose across organisms