Experiment set25S47 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Isoleucine carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS14775 -5.2 -2.4 enoyl-CoA hydratase compare
PFLU_RS20625 -4.5 -3.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS06055 -4.3 -2.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS14760 -4.2 -4.1 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS15795 -3.4 -3.1 hypothetical protein compare
PFLU_RS04835 -3.4 -1.3 hypothetical protein compare
PFLU_RS19665 -3.3 -1.3 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS31290 -3.3 -1.7 EamA family transporter compare
PFLU_RS14770 -3.1 -5.1 acyl-CoA dehydrogenase conserved
PFLU_RS19910 -2.7 -1.9 hypothetical protein compare
PFLU_RS05210 -2.7 -3.0 HU family DNA-binding protein compare
PFLU_RS22190 -2.7 -1.0 hypothetical protein compare
PFLU_RS24205 -2.6 -1.8 DNA binding protein compare
PFLU_RS30615 -2.6 -3.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS14245 -2.5 -10.6 AraC family transcriptional regulator conserved
PFLU_RS18820 -2.5 -3.0 acyl-CoA dehydrogenase compare
PFLU_RS15065 -2.5 -5.8 IclR family transcriptional regulator compare
PFLU_RS14765 -2.4 -11.5 acetyl-CoA C-acyltransferase conserved
PFLU_RS15610 -2.4 -3.2 helix-turn-helix transcriptional regulator compare
PFLU_RS19720 -2.3 -2.5 hypothetical protein compare
PFLU_RS04565 -2.3 -1.2 TMEM165/GDT1 family protein compare
PFLU_RS07245 -2.3 -7.9 DegQ family serine endoprotease compare
PFLU_RS18015 -2.2 -3.7 energy transducer TonB compare
PFLU_RS01285 -2.2 -1.4 HAMP domain-containing protein compare
PFLU_RS12975 -2.2 -4.3 DUF934 domain-containing protein compare
PFLU_RS02765 -2.2 -2.3 HupE/UreJ family protein compare
PFLU_RS07540 -2.2 -2.7 class II glutamine amidotransferase compare
PFLU_RS19165 -2.2 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS07195 -2.2 -4.7 hypothetical protein compare
PFLU_RS10975 -2.2 -4.1 FAD-binding oxidoreductase compare
PFLU_RS21665 -2.2 -4.1 MinD/ParA family protein compare
PFLU_RS24535 -2.1 -1.8 DUF3509 domain-containing protein compare
PFLU_RS22470 -2.1 -1.8 hypothetical protein compare
PFLU_RS21300 -2.1 -4.9 cysteine hydrolase compare
PFLU_RS15420 -2.1 -2.6 hypothetical protein compare
PFLU_RS07600 -2.1 -3.6 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM compare
PFLU_RS29760 -2.1 -9.7 phosphate ABC transporter permease PstA compare
PFLU_RS24860 -2.0 -3.0 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS25920 -2.0 -2.5 outer membrane protein assembly factor BamE compare
PFLU_RS03970 -2.0 -9.7 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS12980 -2.0 -8.2 nitrite/sulfite reductase compare
PFLU_RS19350 -2.0 -6.3 Lrp/AsnC family transcriptional regulator conserved
PFLU_RS19375 -2.0 -8.9 branched-chain amino acid aminotransferase compare
PFLU_RS22685 -2.0 -9.1 2-methylcitrate synthase conserved
PFLU_RS08505 -2.0 -7.0 protease HtpX compare
PFLU_RS19355 -2.0 -9.8 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha conserved
PFLU_RS27365 -2.0 -7.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20540 -2.0 -9.5 phosphoribosylanthranilate isomerase compare
PFLU_RS12650 -2.0 -2.7 hypothetical protein compare
PFLU_RS30160 -1.9 -3.4 ParB/RepB/Spo0J family partition protein compare
PFLU_RS29290 -1.9 -4.5 hypothetical protein compare
PFLU_RS19370 -1.9 -6.0 dihydrolipoyl dehydrogenase conserved
PFLU_RS22835 -1.9 -8.0 amidotransferase compare
PFLU_RS07650 -1.9 -9.5 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS22740 -1.9 -3.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS13750 -1.9 -1.6 hypothetical protein compare
PFLU_RS16785 -1.9 -1.4 GAF domain-containing protein compare
PFLU_RS15310 -1.9 -1.9 YgdI/YgdR family lipoprotein compare
PFLU_RS07495 -1.9 -2.1 DUF2892 domain-containing protein compare
PFLU_RS04465 -1.8 -6.6 ATP phosphoribosyltransferase compare
PFLU_RS12580 -1.8 -6.6 MurR/RpiR family transcriptional regulator compare
PFLU_RS24025 -1.8 -9.8 quinolinate synthase NadA compare
PFLU_RS27640 -1.8 -1.9 alpha/beta fold hydrolase compare
PFLU_RS19935 -1.8 -1.3 type II secretion system protein GspF compare
PFLU_RS19830 -1.8 -3.3 type VI secretion system tube protein Hcp compare
PFLU_RS04220 -1.8 -8.0 FadR family transcriptional regulator compare
PFLU_RS28390 -1.8 -8.0 methionine biosynthesis protein MetW compare
PFLU_RS21060 -1.8 -4.2 TetR/AcrR family transcriptional regulator compare
PFLU_RS15005 -1.8 -1.5 hypothetical protein compare
PFLU_RS22395 -1.8 -5.2 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS19360 -1.8 -11.7 alpha-ketoacid dehydrogenase subunit beta conserved
PFLU_RS08285 -1.8 -3.7 hypothetical protein compare
PFLU_RS22675 -1.8 -4.0 2-methylaconitate cis-trans isomerase PrpF compare
PFLU_RS20510 -1.8 -10.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24765 -1.7 -13.0 2-isopropylmalate synthase compare
PFLU_RS05630 -1.7 -1.5 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01965 -1.7 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS31635 -1.7 -2.6 IS21 family transposase compare
PFLU_RS22030 -1.7 -2.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS01605 -1.7 -6.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS31215 -1.7 -2.1 hypothetical protein compare
PFLU_RS09190 -1.7 -1.4 hypothetical protein compare
PFLU_RS27370 -1.7 -9.6 anthranilate phosphoribosyltransferase compare
PFLU_RS01900 -1.7 -6.2 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS07695 -1.7 -2.2 beta-N-acetylhexosaminidase compare
PFLU_RS04445 -1.7 -5.3 ABC transporter substrate-binding protein compare
PFLU_RS07645 -1.7 -4.4 hypothetical protein compare
PFLU_RS04470 -1.7 -8.7 histidinol dehydrogenase compare
PFLU_RS23675 -1.7 -2.1 hypothetical protein compare
PFLU_RS16390 -1.7 -1.3 DUF411 domain-containing protein compare
PFLU_RS24085 -1.7 -2.5 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS02670 -1.7 -4.0 hypothetical protein compare
PFLU_RS05915 -1.7 -3.7 diacylglycerol kinase compare
PFLU_RS20580 -1.7 -9.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS18505 -1.6 -7.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS05655 -1.6 -3.8 DeoR/GlpR family transcriptional regulator compare
PFLU_RS04015 -1.6 -2.2 1-phosphofructokinase compare
PFLU_RS16865 -1.6 -2.0 hypothetical protein compare
PFLU_RS20575 -1.6 -4.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS01610 -1.6 -8.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS30340 -1.6 -3.6 hypothetical protein compare
PFLU_RS03610 -1.6 -3.7 redox-regulated ATPase YchF compare
PFLU_RS04195 -1.6 -3.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS20730 -1.6 -1.5 hypothetical protein compare
PFLU_RS08125 -1.6 -2.4 integration host factor subunit beta compare
PFLU_RS00180 -1.6 -7.0 tryptophan synthase subunit beta compare
PFLU_RS14820 -1.6 -4.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS25715 -1.6 -8.2 RNA polymerase-binding protein DksA compare
PFLU_RS14195 -1.6 -1.6 hypothetical protein compare
PFLU_RS07065 -1.6 -3.7 hypothetical protein compare
PFLU_RS22895 -1.6 -11.8 PLP-dependent aminotransferase family protein compare
PFLU_RS18530 -1.6 -2.9 DNA translocase FtsK compare
PFLU_RS22680 -1.6 -10.2 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
PFLU_RS00175 -1.6 -7.3 tryptophan synthase subunit alpha compare
PFLU_RS18040 -1.5 -2.4 GGDEF domain-containing protein compare
PFLU_RS14050 -1.5 -1.4 hypothetical protein compare
PFLU_RS00775 -1.5 -3.2 hypothetical protein compare
PFLU_RS20515 -1.5 -4.6 amidophosphoribosyltransferase compare
PFLU_RS29750 -1.5 -4.5 phosphate signaling complex protein PhoU compare
PFLU_RS12710 -1.5 -2.8 AbrB family transcriptional regulator compare
PFLU_RS18435 -1.5 -3.2 arsenate reductase (glutaredoxin) compare
PFLU_RS31590 -1.5 -1.6 hypothetical protein compare
PFLU_RS02700 -1.5 -2.8 ammonia-dependent NAD(+) synthetase compare
PFLU_RS18635 -1.5 -2.0 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS22690 -1.5 -7.9 methylisocitrate lyase compare
PFLU_RS04385 -1.5 -6.6 RNase adapter RapZ compare
PFLU_RS31615 -1.5 -3.2 hypothetical protein compare
PFLU_RS23310 -1.5 -7.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS02490 -1.5 -8.4 phosphoserine phosphatase SerB compare
PFLU_RS02590 -1.5 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS19160 -1.5 -7.8 endopeptidase La compare
PFLU_RS29875 -1.5 -9.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS28645 -1.5 -9.1 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS18940 -1.4 -6.8 acyl-CoA dehydrogenase compare
PFLU_RS23305 -1.4 -7.0 arginine N-succinyltransferase compare
PFLU_RS18950 -1.4 -4.1 MerR family DNA-binding transcriptional regulator compare
PFLU_RS16775 -1.4 -3.5 GNAT family N-acetyltransferase compare
PFLU_RS18610 -1.4 -8.9 isocitrate lyase compare
PFLU_RS16005 -1.4 -2.7 DUF3156 family protein compare
PFLU_RS25595 -1.4 -1.0 exodeoxyribonuclease V subunit gamma compare
PFLU_RS19365 -1.4 -6.3 2-oxo acid dehydrogenase subunit E2 conserved
PFLU_RS30795 -1.4 -3.6 tail fiber domain-containing protein compare
PFLU_RS01910 -1.4 -1.3 sterol-binding protein compare
PFLU_RS16310 -1.4 -1.9 hypothetical protein compare
PFLU_RS20565 -1.4 -8.1 3-isopropylmalate dehydrogenase compare
PFLU_RS29880 -1.4 -8.2 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS29095 -1.4 -11.6 polyphosphate kinase 1 compare
PFLU_RS19705 -1.4 -4.9 amino acid ABC transporter permease compare
PFLU_RS25640 -1.4 -7.6 ketol-acid reductoisomerase compare
PFLU_RS11525 -1.4 -3.3 GntR family transcriptional regulator compare
PFLU_RS28385 -1.4 -8.1 homoserine O-acetyltransferase compare
PFLU_RS01895 -1.4 -4.4 phosphoribosyl-ATP diphosphatase compare
PFLU_RS02790 -1.3 -1.2 TetR family transcriptional regulator compare
PFLU_RS28655 -1.3 -8.1 HAD family hydrolase compare
PFLU_RS08370 -1.3 -3.6 hypothetical protein compare
PFLU_RS28535 -1.3 -8.4 dihydroxy-acid dehydratase compare
PFLU_RS31795 -1.3 -2.1 hypothetical protein compare
PFLU_RS24485 -1.3 -5.5 hypothetical protein compare
PFLU_RS24015 -1.3 -1.5 cold-shock protein compare
PFLU_RS27305 -1.3 -6.4 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS12145 -1.3 -1.5 nuclear transport factor 2 family protein compare
PFLU_RS28165 -1.3 -7.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS18910 -1.3 -1.9 MarR family transcriptional regulator compare
PFLU_RS31740 -1.3 -2.8 hypothetical protein compare
PFLU_RS01620 -1.3 -5.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS18410 -1.3 -3.2 response regulator compare
PFLU_RS09980 -1.3 -7.8 peptidase S41 compare
PFLU_RS10835 -1.3 -1.5 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS30865 -1.3 -2.4 transposase compare
PFLU_RS26020 -1.3 -7.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS25750 -1.3 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS27650 -1.3 -8.8 biotin synthase BioB compare
PFLU_RS11720 -1.3 -2.6 hypothetical protein compare
PFLU_RS02455 -1.3 -1.7 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS22095 -1.3 -9.5 GTP diphosphokinase compare
PFLU_RS25875 -1.3 -2.9 transcription elongation factor GreA compare
PFLU_RS08860 -1.3 -1.8 2-hydroxy-3-oxopropionate reductase compare
PFLU_RS27465 -1.3 -3.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS08445 -1.2 -4.9 MarR family transcriptional regulator compare
PFLU_RS25645 -1.2 -1.9 acetolactate synthase small subunit compare
PFLU_RS21240 -1.2 -1.2 hypothetical protein compare
PFLU_RS24805 -1.2 -3.5 helix-turn-helix domain-containing protein compare
PFLU_RS26660 -1.2 -1.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS19120 -1.2 -2.0 MarR family transcriptional regulator compare
PFLU_RS05910 -1.2 -1.1 response regulator transcription factor compare
PFLU_RS31475 -1.2 -1.5 hypothetical protein compare
PFLU_RS14430 -1.2 -1.4 arsenate reductase ArsC compare
PFLU_RS28195 -1.2 -8.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS02325 -1.2 -3.2 ATP-binding cassette domain-containing protein compare
PFLU_RS20290 -1.2 -1.2 integration host factor subunit alpha compare
PFLU_RS17660 -1.2 -1.7 DUF2946 domain-containing protein compare
PFLU_RS11645 -1.2 -2.5 SMP-30/gluconolactonase/LRE family protein compare
PFLU_RS16155 -1.2 -2.9 phosphate ABC transporter ATP-binding protein compare
PFLU_RS15010 -1.2 -3.6 hypothetical protein compare
PFLU_RS22105 -1.2 -3.1 cysteine synthase CysM compare
PFLU_RS27630 -1.2 -3.4 dethiobiotin synthase compare
PFLU_RS27685 -1.2 -8.1 malate synthase G compare
PFLU_RS31330 -1.2 -3.6 hypothetical protein compare
PFLU_RS29885 -1.2 -5.5 LysR family transcriptional regulator compare
PFLU_RS12395 -1.2 -1.6 zinc ribbon domain-containing protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source L-Isoleucine in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Isoleucine across organisms