Experiment set25S30 for Pseudomonas fluorescens SBW25-INTG

Compare to:

2-Keto-D-gluconic acid hemicalcium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS27640 -6.0 -3.3 alpha/beta fold hydrolase compare
PFLU_RS07910 -4.3 -2.3 type 1 fimbrial protein compare
PFLU_RS20575 -4.1 -6.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS31290 -3.6 -2.2 EamA family transporter compare
PFLU_RS25645 -3.5 -2.4 acetolactate synthase small subunit compare
PFLU_RS20565 -3.4 -15.6 3-isopropylmalate dehydrogenase compare
PFLU_RS12980 -3.2 -8.5 nitrite/sulfite reductase compare
PFLU_RS11380 -3.1 -2.7 sarcosine oxidase subunit delta compare
PFLU_RS31800 -3.1 -2.8 hypothetical protein compare
PFLU_RS13240 -3.0 -9.3 D-glycerate dehydrogenase conserved
PFLU_RS29515 -3.0 -12.8 RidA family protein compare
PFLU_RS20580 -3.0 -13.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS26535 -3.0 -7.6 thiamine phosphate synthase compare
PFLU_RS13260 -3.0 -7.3 LacI family DNA-binding transcriptional regulator compare
PFLU_RS12975 -2.9 -4.8 DUF934 domain-containing protein compare
PFLU_RS02490 -2.9 -13.6 phosphoserine phosphatase SerB compare
PFLU_RS01900 -2.9 -8.0 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS01605 -2.9 -9.3 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20540 -2.9 -11.6 phosphoribosylanthranilate isomerase compare
PFLU_RS13665 -2.8 -1.2 MarR family transcriptional regulator compare
PFLU_RS28165 -2.8 -13.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS20510 -2.8 -14.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24765 -2.8 -19.7 2-isopropylmalate synthase compare
PFLU_RS04470 -2.8 -12.9 histidinol dehydrogenase compare
PFLU_RS28535 -2.8 -16.4 dihydroxy-acid dehydratase compare
PFLU_RS23305 -2.8 -11.2 arginine N-succinyltransferase compare
PFLU_RS00175 -2.8 -9.6 tryptophan synthase subunit alpha compare
PFLU_RS18505 -2.8 -9.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS28385 -2.7 -14.7 homoserine O-acetyltransferase compare
PFLU_RS27365 -2.7 -11.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01625 -2.7 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS13245 -2.7 -13.7 MFS transporter conserved
PFLU_RS25360 -2.7 -9.2 glutamate 5-kinase compare
PFLU_RS28390 -2.6 -10.7 methionine biosynthesis protein MetW compare
PFLU_RS24205 -2.6 -2.5 DNA binding protein compare
PFLU_RS09055 -2.6 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS13255 -2.6 -7.0 TIM barrel protein conserved
PFLU_RS01620 -2.6 -9.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS00180 -2.6 -8.4 tryptophan synthase subunit beta compare
PFLU_RS05655 -2.6 -3.6 DeoR/GlpR family transcriptional regulator compare
PFLU_RS23310 -2.6 -9.7 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS24025 -2.6 -12.6 quinolinate synthase NadA compare
PFLU_RS03970 -2.6 -10.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS28645 -2.6 -13.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS27370 -2.5 -12.8 anthranilate phosphoribosyltransferase compare
PFLU_RS25640 -2.5 -14.0 ketol-acid reductoisomerase compare
PFLU_RS27650 -2.5 -15.4 biotin synthase BioB compare
PFLU_RS28655 -2.5 -13.4 HAD family hydrolase compare
PFLU_RS27630 -2.5 -5.5 dethiobiotin synthase compare
PFLU_RS27635 -2.5 -11.3 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS01610 -2.5 -11.1 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS02590 -2.5 -10.7 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS15310 -2.5 -2.4 YgdI/YgdR family lipoprotein compare
PFLU_RS30900 -2.5 -2.4 hypothetical protein compare
PFLU_RS25715 -2.5 -10.2 RNA polymerase-binding protein DksA compare
PFLU_RS01995 -2.5 -11.5 malate dehydrogenase compare
PFLU_RS01895 -2.5 -6.2 phosphoribosyl-ATP diphosphatase compare
PFLU_RS18395 -2.5 -1.6 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS04465 -2.4 -8.9 ATP phosphoribosyltransferase compare
PFLU_RS28695 -2.4 -8.3 phosphoglycerate dehydrogenase compare
PFLU_RS20515 -2.4 -4.8 amidophosphoribosyltransferase compare
PFLU_RS27645 -2.4 -12.9 8-amino-7-oxononanoate synthase compare
PFLU_RS04565 -2.4 -1.5 TMEM165/GDT1 family protein compare
PFLU_RS13250 -2.4 -5.6 sugar kinase conserved
PFLU_RS08505 -2.4 -7.9 protease HtpX compare
PFLU_RS29875 -2.4 -15.5 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS08650 -2.4 -3.6 heme exporter protein CcmB compare
PFLU_RS22520 -2.4 -3.1 GntR family transcriptional regulator compare
PFLU_RS28195 -2.4 -13.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS09670 -2.4 -2.1 integrating conjugative element protein compare
PFLU_RS13045 -2.4 -7.2 AAA domain-containing protein compare
PFLU_RS07225 -2.4 -14.3 L-aspartate oxidase compare
PFLU_RS14335 -2.3 -3.5 ABC transporter permease compare
PFLU_RS19170 -2.3 -3.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS29360 -2.3 -1.8 cytochrome c5 family protein compare
PFLU_RS22105 -2.3 -4.0 cysteine synthase CysM compare
PFLU_RS25920 -2.3 -3.3 outer membrane protein assembly factor BamE compare
PFLU_RS29880 -2.3 -12.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS28895 -2.2 -2.6 DUF2388 domain-containing protein compare
PFLU_RS21665 -2.2 -4.7 MinD/ParA family protein compare
PFLU_RS28420 -2.2 -8.2 thiazole synthase compare
PFLU_RS00530 -2.2 -2.1 DUF2388 domain-containing protein compare
PFLU_RS29885 -2.2 -10.2 LysR family transcriptional regulator compare
PFLU_RS17750 -2.2 -2.9 pirin family protein compare
PFLU_RS08065 -2.2 -8.1 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS27440 -2.2 -7.1 nucleotidyltransferase family protein compare
PFLU_RS29095 -2.2 -17.5 polyphosphate kinase 1 compare
PFLU_RS26530 -2.1 -13.2 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS07695 -2.1 -4.0 beta-N-acetylhexosaminidase compare
PFLU_RS18670 -2.1 -1.4 NADH-quinone oxidoreductase subunit M compare
PFLU_RS21710 -2.1 -7.8 flagellar type III secretion system pore protein FliP compare
PFLU_RS06055 -2.1 -2.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS15205 -2.1 -3.2 ribose ABC transporter permease compare
PFLU_RS14810 -2.1 -2.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS20660 -2.1 -9.7 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS29215 -2.0 -10.8 response regulator transcription factor compare
PFLU_RS22095 -2.0 -14.1 GTP diphosphokinase compare
PFLU_RS26905 -2.0 -9.6 transcriptional regulator NrdR compare
PFLU_RS05890 -2.0 -1.2 recombination regulator RecX compare
PFLU_RS11850 -2.0 -2.3 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS06165 -2.0 -4.1 hypothetical protein compare
PFLU_RS18655 -2.0 -1.9 NADH-quinone oxidoreductase subunit J compare
PFLU_RS21805 -2.0 -11.6 flagellar export chaperone FliS compare
PFLU_RS25750 -2.0 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS02670 -1.9 -4.1 hypothetical protein compare
PFLU_RS21830 -1.9 -14.5 flagellar hook-associated protein 3 compare
PFLU_RS13050 -1.9 -5.7 VWA domain-containing protein compare
PFLU_RS02980 -1.9 -2.3 precorrin-8X methylmutase compare
PFLU_RS23070 -1.9 -1.4 50S ribosomal protein L32 compare
PFLU_RS12145 -1.9 -1.8 nuclear transport factor 2 family protein compare
PFLU_RS04385 -1.8 -8.4 RNase adapter RapZ compare
PFLU_RS18615 -1.8 -1.2 NADH-quinone oxidoreductase subunit A compare
PFLU_RS28965 -1.8 -9.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS23205 -1.8 -8.6 flagellar protein FlgN compare
PFLU_RS22740 -1.8 -4.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS14820 -1.8 -4.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS07255 -1.8 -3.1 sulfurtransferase TusA family protein compare
PFLU_RS15410 -1.8 -1.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS15610 -1.8 -4.3 helix-turn-helix transcriptional regulator compare
PFLU_RS29760 -1.8 -9.3 phosphate ABC transporter permease PstA compare
PFLU_RS29490 -1.8 -7.4 ribonuclease PH compare
PFLU_RS21765 -1.8 -5.0 flagellar assembly protein FliH compare
PFLU_RS15795 -1.7 -2.1 hypothetical protein compare
PFLU_RS11980 -1.7 -5.7 precorrin-6A synthase (deacetylating) compare
PFLU_RS23380 -1.7 -1.2 HAD-IB family hydrolase compare
PFLU_RS24330 -1.7 -2.6 phosphogluconate dehydratase compare
PFLU_RS09575 -1.7 -3.2 FadR family transcriptional regulator compare
PFLU_RS04325 -1.7 -11.7 ribonuclease G compare
PFLU_RS21985 -1.7 -3.8 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS23235 -1.7 -2.9 Arc family DNA-binding protein compare
PFLU_RS27910 -1.7 -1.6 helix-turn-helix transcriptional regulator compare
PFLU_RS24805 -1.7 -4.7 helix-turn-helix domain-containing protein compare
PFLU_RS04220 -1.7 -7.8 FadR family transcriptional regulator compare
PFLU_RS30345 -1.7 -3.3 DUF2559 family protein compare
PFLU_RS14550 -1.7 -5.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS03665 -1.7 -5.0 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS21615 -1.7 -7.2 chemotaxis protein CheW compare
PFLU_RS04445 -1.7 -5.6 ABC transporter substrate-binding protein compare
PFLU_RS23220 -1.7 -3.1 tRNA-Arg compare
PFLU_RS27465 -1.7 -4.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS23175 -1.7 -5.8 flagellar basal body rod protein FlgC compare
PFLU_RS21425 -1.7 -3.1 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS18530 -1.7 -3.2 DNA translocase FtsK compare
PFLU_RS27305 -1.7 -7.8 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS04195 -1.7 -5.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS22375 -1.7 -9.8 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS24090 -1.7 -2.9 Holliday junction branch migration protein RuvA compare
PFLU_RS21670 -1.6 -8.6 flagellar biosynthesis protein FlhF compare
PFLU_RS22530 -1.6 -3.6 DUF469 domain-containing protein compare
PFLU_RS23590 -1.6 -1.9 gluconokinase compare
PFLU_RS21645 -1.6 -8.4 chemotaxis protein CheA compare
PFLU_RS02275 -1.6 -1.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS19165 -1.6 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS27475 -1.6 -5.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS08760 -1.6 -3.3 phosphonate C-P lyase system protein PhnG compare
PFLU_RS13540 -1.6 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS04430 -1.6 -6.5 ATP-binding cassette domain-containing protein compare
PFLU_RS05915 -1.6 -3.2 diacylglycerol kinase compare
PFLU_RS21640 -1.6 -6.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS23185 -1.6 -9.0 protein-glutamate O-methyltransferase CheR compare
PFLU_RS26020 -1.6 -8.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS07785 -1.5 -8.1 VacJ family lipoprotein compare
PFLU_RS26635 -1.5 -3.5 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS30725 -1.5 -2.9 DUF1652 domain-containing protein compare
PFLU_RS21835 -1.5 -9.5 flagellar hook-associated protein FlgK compare
PFLU_RS21735 -1.5 -7.3 flagellar hook-length control protein FliK compare
PFLU_RS00195 -1.5 -2.4 dodecin domain-containing protein compare
PFLU_RS04435 -1.5 -5.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS07650 -1.5 -7.5 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS21810 -1.5 -11.2 flagellar filament capping protein FliD compare
PFLU_RS02430 -1.5 -10.1 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS21300 -1.5 -4.3 cysteine hydrolase compare
PFLU_RS25225 -1.5 -5.9 disulfide bond formation protein B compare
PFLU_RS21740 -1.5 -5.4 Hpt domain-containing protein compare
PFLU_RS29310 -1.5 -0.8 accessory factor UbiK family protein compare
PFLU_RS08185 -1.5 -7.0 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS01885 -1.5 -5.8 Sec-independent protein translocase subunit TatB compare
PFLU_RS21755 -1.5 -6.3 flagella biosynthesis chaperone FliJ compare
PFLU_RS30510 -1.5 -4.7 glycosyltransferase family 4 protein compare
PFLU_RS19175 -1.5 -5.7 trigger factor compare
PFLU_RS22735 -1.5 -7.2 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS21635 -1.5 -3.9 flagellar motor protein compare
PFLU_RS24785 -1.4 -8.0 outer membrane protein assembly factor BamB compare
PFLU_RS04330 -1.4 -10.8 TIGR02099 family protein compare
PFLU_RS13000 -1.4 -9.1 methionine synthase compare
PFLU_RS25595 -1.4 -1.6 exodeoxyribonuclease V subunit gamma compare
PFLU_RS02000 -1.4 -11.7 penicillin-binding protein 1A compare
PFLU_RS21855 -1.4 -7.1 flagellar basal-body rod protein FlgG compare
PFLU_RS22370 -1.4 -8.5 cadmium-translocating P-type ATPase compare
PFLU_RS10840 -1.4 -3.6 alcohol dehydrogenase catalytic domain-containing protein compare
PFLU_RS21820 -1.4 -7.8 flagellin compare
PFLU_RS21775 -1.4 -7.9 flagellar basal body M-ring protein FliF compare
PFLU_RS09945 -1.4 -3.6 catalase family protein compare
PFLU_RS14440 -1.4 -0.9 hypothetical protein compare
PFLU_RS22395 -1.4 -4.8 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS25815 -1.4 -1.9 transcription termination/antitermination protein NusA compare
PFLU_RS24095 -1.4 -2.2 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS20520 -1.4 -6.9 colicin V production protein CvpA compare
PFLU_RS07275 -1.4 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS16790 -1.4 -4.4 AraC family transcriptional regulator compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source 2-Keto-D-gluconic acid hemicalcium salt monohydrate in Pseudomonas fluorescens SBW25-INTG

For carbon source 2-Keto-D-gluconic acid hemicalcium salt monohydrate across organisms