Experiment set25S3 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Arabinose carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS11620 +2.9 22.1 FadR family transcriptional regulator compare
PFLU_RS05890 +1.8 1.4 recombination regulator RecX compare
PFLU_RS25865 +1.6 3.2 YhbY family RNA-binding protein compare
PFLU_RS29810 +1.6 10.3 LysR family transcriptional regulator compare
PFLU_RS15200 +1.5 2.8 ABC transporter substrate-binding protein compare
PFLU_RS00460 +1.5 10.5 glutamate/aspartate:proton symporter GltP compare
PFLU_RS26565 +1.3 2.7 rRNA maturation RNase YbeY compare
PFLU_RS02455 +1.2 2.4 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS29780 +1.2 6.4 acyl-CoA thioesterase compare
PFLU_RS31425 +1.2 2.3 hypothetical protein compare
PFLU_RS29480 +1.1 9.1 exodeoxyribonuclease III compare
PFLU_RS09500 +1.1 1.3 hypothetical protein compare
PFLU_RS14440 +1.1 0.8 hypothetical protein compare
PFLU_RS02265 +1.1 7.9 EAL domain-containing protein compare
PFLU_RS02115 +1.1 3.6 outer membrane lipoprotein carrier protein LolA compare
PFLU_RS02625 +1.0 7.5 ribonuclease R compare
PFLU_RS31075 +1.0 5.2 hypothetical protein compare
PFLU_RS25190 +0.9 3.0 hypothetical protein compare
PFLU_RS10430 +0.9 2.7 peptidase compare
PFLU_RS15800 +0.9 2.8 immunity 49 family protein compare
PFLU_RS04660 +0.9 3.8 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS03995 +0.9 1.7 hypothetical protein compare
PFLU_RS13315 +0.9 3.1 class I SAM-dependent methyltransferase compare
PFLU_RS25135 +0.8 2.6 hypothetical protein compare
PFLU_RS25220 +0.8 4.6 ubiquinol oxidase subunit II compare
PFLU_RS04485 +0.8 5.7 uracil phosphoribosyltransferase compare
PFLU_RS03555 +0.8 0.9 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS14420 +0.8 2.2 chemotactic transduction protein ChpE compare
PFLU_RS07495 +0.8 1.1 DUF2892 domain-containing protein compare
PFLU_RS17495 +0.8 1.8 hypothetical protein compare
PFLU_RS08350 +0.8 2.1 ABC transporter ATP-binding protein compare
PFLU_RS14125 +0.8 2.0 lysozyme compare
PFLU_RS18175 +0.8 1.8 sugar ABC transporter substrate-binding protein compare
PFLU_RS18735 +0.8 0.7 hypothetical protein compare
PFLU_RS00895 +0.8 2.6 hypothetical protein compare
PFLU_RS25205 +0.8 3.0 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS03055 +0.8 1.9 methyl-accepting chemotaxis protein compare
PFLU_RS19875 +0.8 3.0 amino acid ABC transporter ATP-binding protein compare
PFLU_RS31290 +0.8 1.4 EamA family transporter compare
PFLU_RS14170 +0.8 2.2 TIGR03067 domain-containing protein compare
PFLU_RS13710 +0.8 2.8 DUF1294 domain-containing protein compare
PFLU_RS12945 +0.8 1.9 hypothetical protein compare
PFLU_RS29815 +0.7 2.5 aspartate ammonia-lyase compare
PFLU_RS07855 +0.7 3.0 hypothetical protein compare
PFLU_RS23325 +0.7 4.8 GlxA family transcriptional regulator compare
PFLU_RS22660 +0.7 5.3 serine acetyltransferase compare
PFLU_RS20015 +0.7 1.3 transporter compare
PFLU_RS00395 +0.7 5.4 DNA polymerase I compare
PFLU_RS22645 +0.7 5.2 EamA family transporter compare
PFLU_RS31675 +0.7 1.5 hypothetical protein compare
PFLU_RS21955 +0.7 2.3 hypothetical protein compare
PFLU_RS15990 +0.7 1.3 SDR family oxidoreductase compare
PFLU_RS30590 +0.7 1.1 hypothetical protein compare
PFLU_RS31805 +0.7 1.4 hypothetical protein compare
PFLU_RS04515 +0.7 3.9 hypothetical protein compare
PFLU_RS29340 +0.7 3.8 bifunctional diguanylate cyclase/phosphodiesterase compare
PFLU_RS19475 +0.7 2.0 Zn-dependent hydrolase compare
PFLU_RS01095 +0.7 2.1 ribbon-helix-helix protein, CopG family compare
PFLU_RS21910 +0.6 5.3 BamA/TamA family outer membrane protein compare
PFLU_RS02515 +0.6 2.3 flagellar motor protein MotB compare
PFLU_RS16510 +0.6 2.1 thiol-disulfide oxidoreductase DCC family protein compare
PFLU_RS06630 +0.6 1.7 ABC transporter ATP-binding protein compare
PFLU_RS25200 +0.6 3.3 protoheme IX farnesyltransferase compare
PFLU_RS08280 +0.6 1.8 hypothetical protein compare
PFLU_RS20995 +0.6 3.3 3-dehydroquinate dehydratase compare
PFLU_RS12230 +0.6 1.7 carboxymuconolactone decarboxylase family protein compare
PFLU_RS04490 +0.6 1.9 hypoxanthine-guanine phosphoribosyltransferase compare
PFLU_RS29400 +0.6 1.5 DUF1127 domain-containing protein compare
PFLU_RS29745 +0.6 1.9 response regulator compare
PFLU_RS14035 +0.6 2.4 hypothetical protein compare
PFLU_RS26170 +0.6 1.9 elongation factor GreAB compare
PFLU_RS21215 +0.6 0.7 YheU family protein compare
PFLU_RS17875 +0.6 2.5 GDP-mannose mannosyl hydrolase compare
PFLU_RS07630 +0.6 4.6 transglycosylase SLT domain-containing protein compare
PFLU_RS29280 +0.6 3.0 tyrosine recombinase XerC compare
PFLU_RS03100 +0.6 1.3 hypothetical protein compare
PFLU_RS05875 +0.6 2.3 lysozyme compare
PFLU_RS18985 +0.6 2.1 helix-turn-helix domain-containing protein compare
PFLU_RS31010 +0.6 0.7 transposase compare
PFLU_RS19550 +0.6 0.6 ABC transporter ATP-binding protein compare
PFLU_RS06310 +0.6 2.6 sigma E protease regulator RseP compare
PFLU_RS18095 +0.6 1.7 GlxA family transcriptional regulator compare
PFLU_RS24560 +0.6 3.3 site-specific tyrosine recombinase XerD compare
PFLU_RS03160 +0.6 2.5 tetratricopeptide repeat protein compare
PFLU_RS30745 +0.6 2.8 hypothetical protein compare
PFLU_RS01390 +0.6 3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS02705 +0.6 2.6 nicotinate phosphoribosyltransferase compare
PFLU_RS30880 +0.6 1.9 type VI secretion system baseplate subunit TssE compare
PFLU_RS23885 +0.5 0.9 transposase compare
PFLU_RS26500 +0.5 2.4 Lrp/AsnC family transcriptional regulator compare
PFLU_RS24305 +0.5 1.1 antibiotic biosynthesis monooxygenase compare
PFLU_RS23345 +0.5 3.9 ABC transporter permease compare
PFLU_RS07170 +0.5 3.8 HDOD domain-containing protein compare
PFLU_RS21575 +0.5 1.1 pyrimidine/purine nucleoside phosphorylase compare
PFLU_RS25210 +0.5 2.4 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS31150 +0.5 2.2 hypothetical protein compare
PFLU_RS22650 +0.5 3.9 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS05835 +0.5 1.9 phage tail protein compare
PFLU_RS23235 +0.5 0.8 Arc family DNA-binding protein compare
PFLU_RS25215 +0.5 3.6 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS13375 +0.5 2.1 carbohydrate kinase compare
PFLU_RS06570 +0.5 1.1 glycine zipper 2TM domain-containing protein compare
PFLU_RS26835 +0.5 1.5 exodeoxyribonuclease VII small subunit compare
PFLU_RS21935 +0.5 4.3 sensor histidine kinase compare
PFLU_RS09255 +0.5 3.0 recombination-associated protein RdgC compare
PFLU_RS12740 +0.5 1.3 BcpO-related WXXGXW repeat protein compare
PFLU_RS12220 +0.5 1.4 AraC family transcriptional regulator compare
PFLU_RS11830 +0.5 1.1 hypothetical protein compare
PFLU_RS02215 +0.5 1.1 hypothetical protein compare
PFLU_RS00190 +0.5 0.7 DUF883 domain-containing protein compare
PFLU_RS03395 +0.5 2.4 ribosomal-protein-alanine N-acetyltransferase compare
PFLU_RS31225 +0.5 1.7 membrane protein insertion efficiency factor YidD compare
PFLU_RS29090 +0.5 2.9 exopolyphosphatase compare
PFLU_RS10405 +0.5 1.1 helix-turn-helix transcriptional regulator compare
PFLU_RS13225 +0.5 2.2 hypothetical protein compare
PFLU_RS05880 +0.5 2.1 CinA family protein compare
PFLU_RS18395 +0.5 0.7 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS09925 +0.5 2.7 LysE family translocator compare
PFLU_RS23015 +0.5 2.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS20765 +0.5 1.2 hypothetical protein compare
PFLU_RS20435 +0.5 1.6 heavy metal response regulator transcription factor compare
PFLU_RS24280 +0.5 1.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS31535 +0.5 0.5 hypothetical protein compare
PFLU_RS31795 +0.5 1.8 hypothetical protein compare
PFLU_RS24690 +0.5 3.4 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS06865 +0.5 2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS29105 +0.5 3.6 DedA family protein compare
PFLU_RS14045 +0.5 1.0 hypothetical protein compare
PFLU_RS18075 +0.5 1.3 LysR family transcriptional regulator compare
PFLU_RS17190 +0.5 1.8 acetyl-CoA C-acetyltransferase compare
PFLU_RS02510 +0.5 3.8 flagellar motor stator protein MotA compare
PFLU_RS14250 +0.5 1.5 MFS transporter compare
PFLU_RS29705 +0.5 2.2 rubredoxin compare
PFLU_RS09100 +0.5 2.3 HAMP domain-containing protein compare
PFLU_RS06430 +0.5 3.5 RNA polymerase sigma factor RpoS compare
PFLU_RS17115 +0.5 2.6 DUF4381 domain-containing protein compare
PFLU_RS08360 +0.5 1.9 hypothetical protein compare
PFLU_RS04945 +0.5 1.0 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS19955 +0.5 1.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS30445 +0.5 1.6 hypothetical protein compare
PFLU_RS08515 +0.5 2.9 peptide-methionine (R)-S-oxide reductase MsrB compare
PFLU_RS15420 +0.5 0.8 hypothetical protein compare
PFLU_RS03165 +0.5 1.8 type II secretion system F family protein compare
PFLU_RS29165 +0.5 1.5 TIGR02444 family protein compare
PFLU_RS31495 +0.5 1.5 hypothetical protein compare
PFLU_RS13525 +0.5 1.6 NAD(P)H-dependent oxidoreductase compare
PFLU_RS19855 +0.5 0.7 DUF4398 domain-containing protein compare
PFLU_RS00440 +0.5 3.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25785 +0.5 1.3 BON domain-containing protein compare
PFLU_RS12635 +0.5 0.8 conjugal transfer protein TraR compare
PFLU_RS07310 +0.5 2.6 hypothetical protein compare
PFLU_RS11840 +0.4 1.1 RNA polymerase sigma factor compare
PFLU_RS08490 +0.4 0.5 DEAD/DEAH box helicase compare
PFLU_RS13235 +0.4 2.6 methyl-accepting chemotaxis protein compare
PFLU_RS02165 +0.4 1.5 beta-ketoacyl synthase chain length factor compare
PFLU_RS28990 +0.4 3.2 flagellar basal body-associated protein FliL compare
PFLU_RS10455 +0.4 2.2 methyl-accepting chemotaxis protein compare
PFLU_RS31620 +0.4 1.4 integrase compare
PFLU_RS01485 +0.4 3.4 cellulase compare
PFLU_RS23340 +0.4 3.7 ABC transporter permease compare
PFLU_RS10975 +0.4 1.2 FAD-binding oxidoreductase compare
PFLU_RS17470 +0.4 1.6 amino acid ABC transporter permease compare
PFLU_RS25790 +0.4 1.8 polyribonucleotide nucleotidyltransferase compare
PFLU_RS25815 +0.4 0.8 transcription termination/antitermination protein NusA compare
PFLU_RS13305 +0.4 1.8 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS00210 +0.4 0.6 OsmC family protein compare
PFLU_RS30070 +0.4 1.3 hypothetical protein compare
PFLU_RS23815 +0.4 3.5 GGDEF and EAL domain-containing protein compare
PFLU_RS14390 +0.4 1.8 hypothetical protein compare
PFLU_RS17660 +0.4 1.3 DUF2946 domain-containing protein compare
PFLU_RS11120 +0.4 1.6 NUDIX hydrolase compare
PFLU_RS15000 +0.4 1.0 HAMP domain-containing histidine kinase compare
PFLU_RS14065 +0.4 2.1 phage minor tail protein L compare
PFLU_RS17610 +0.4 2.1 alpha-hydroxy-acid oxidizing protein compare
PFLU_RS12115 +0.4 2.2 NUDIX hydrolase compare
PFLU_RS11745 +0.4 1.7 xylose isomerase compare
PFLU_RS30855 +0.4 1.2 MerR family transcriptional regulator compare
PFLU_RS26805 +0.4 1.5 hydrolase compare
PFLU_RS20970 +0.4 0.6 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS23210 +0.4 2.8 pilus assembly protein PilZ compare
PFLU_RS05340 +0.4 1.0 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS00455 +0.4 2.0 hypothetical protein compare
PFLU_RS31525 +0.4 1.7 transposase compare
PFLU_RS31780 +0.4 1.2 hypothetical protein compare
PFLU_RS11040 +0.4 1.3 hypothetical protein compare
PFLU_RS26955 +0.4 2.5 sugar nucleotide-binding protein compare
PFLU_RS10505 +0.4 1.5 DUF1993 domain-containing protein compare
PFLU_RS29155 +0.4 1.3 mechanosensitive ion channel family protein compare
PFLU_RS24340 +0.4 1.7 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS02795 +0.4 2.2 hypothetical protein compare
PFLU_RS13220 +0.4 1.9 carbon-nitrogen hydrolase family protein compare
PFLU_RS24455 +0.4 1.6 membrane protein FxsA compare
PFLU_RS00790 +0.4 1.1 hypothetical protein compare
PFLU_RS16175 +0.4 1.8 polyphosphate kinase 2 compare
PFLU_RS13975 +0.4 1.0 hypothetical protein compare
PFLU_RS25315 +0.4 2.1 dihydroneopterin triphosphate 2'-epimerase compare
PFLU_RS22535 +0.4 3.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS00870 +0.4 0.7 hypothetical protein compare
PFLU_RS31825 +0.4 1.3 hypothetical protein compare
PFLU_RS01050 +0.4 2.4 LysR family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Arabinose in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Arabinose across organisms