Experiment set25S27 for Pseudomonas fluorescens SBW25-INTG

Compare to:

m-Inositol carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS28820 -4.9 -2.7 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS20730 -4.2 -2.2 hypothetical protein compare
PFLU_RS13350 -4.0 -1.8 ParD-like family protein compare
PFLU_RS08615 -3.7 -4.5 YgdI/YgdR family lipoprotein compare
PFLU_RS09720 -3.7 -2.7 single-stranded DNA-binding protein compare
PFLU_RS00530 -3.7 -2.8 DUF2388 domain-containing protein compare
PFLU_RS02980 -3.0 -2.4 precorrin-8X methylmutase compare
PFLU_RS13895 -3.0 -1.1 helix-turn-helix transcriptional regulator compare
PFLU_RS15005 -2.8 -1.8 hypothetical protein compare
PFLU_RS05210 -2.7 -3.0 HU family DNA-binding protein compare
PFLU_RS16390 -2.7 -1.7 DUF411 domain-containing protein compare
PFLU_RS15910 -2.6 -1.8 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS08575 -2.6 -2.9 hypothetical protein compare
PFLU_RS09500 -2.5 -0.9 hypothetical protein compare
PFLU_RS19520 -2.5 -3.1 substrate-binding domain-containing protein compare
PFLU_RS09535 -2.5 -1.3 TIGR03750 family conjugal transfer protein compare
PFLU_RS13760 -2.5 -2.4 hypothetical protein compare
PFLU_RS14430 -2.5 -1.7 arsenate reductase ArsC compare
PFLU_RS11930 -2.4 -2.2 biopolymer transporter ExbD compare
PFLU_RS18705 -2.4 -2.6 hypothetical protein compare
PFLU_RS01285 -2.4 -1.6 HAMP domain-containing protein compare
PFLU_RS14250 -2.4 -4.2 MFS transporter compare
PFLU_RS24590 -2.4 -2.8 cytochrome c assembly protein compare
PFLU_RS23070 -2.4 -1.2 50S ribosomal protein L32 compare
PFLU_RS17545 -2.3 -1.2 DUF465 domain-containing protein compare
PFLU_RS01625 -2.3 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS22105 -2.3 -4.0 cysteine synthase CysM compare
PFLU_RS20870 -2.3 -3.1 hypothetical protein compare
PFLU_RS02825 -2.2 -1.6 phosphate starvation-inducible protein PsiF compare
PFLU_RS12585 -2.2 -8.0 5-dehydro-2-deoxygluconokinase conserved
PFLU_RS27440 -2.2 -7.3 nucleotidyltransferase family protein compare
PFLU_RS11415 -2.2 -2.2 protein glxC compare
PFLU_RS22190 -2.1 -1.1 hypothetical protein compare
PFLU_RS18395 -2.1 -1.3 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS12620 -2.1 -4.7 sugar ABC transporter substrate-binding protein conserved
PFLU_RS21520 -2.0 -3.0 thioesterase compare
PFLU_RS22740 -2.0 -3.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS12595 -2.0 -8.5 5-deoxy-glucuronate isomerase conserved
PFLU_RS25360 -2.0 -7.4 glutamate 5-kinase compare
PFLU_RS18075 -2.0 -3.6 LysR family transcriptional regulator compare
PFLU_RS31440 -2.0 -1.5 hypothetical protein compare
PFLU_RS19170 -2.0 -2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS13765 -1.9 -1.9 hypothetical protein compare
PFLU_RS18505 -1.9 -8.6 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS14775 -1.9 -1.8 enoyl-CoA hydratase compare
PFLU_RS14290 -1.9 -2.7 response regulator compare
PFLU_RS12630 -1.9 -9.1 ABC transporter permease conserved
PFLU_RS14810 -1.9 -1.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS14050 -1.9 -1.4 hypothetical protein compare
PFLU_RS14995 -1.9 -2.0 response regulator transcription factor compare
PFLU_RS07275 -1.9 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS27365 -1.9 -7.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS17580 -1.9 -1.9 repressor LexA compare
PFLU_RS04220 -1.9 -8.3 FadR family transcriptional regulator compare
PFLU_RS00190 -1.8 -2.7 DUF883 domain-containing protein compare
PFLU_RS31590 -1.8 -1.5 hypothetical protein compare
PFLU_RS16565 -1.8 -3.5 hypothetical protein compare
PFLU_RS11760 -1.8 -3.3 GlxA family transcriptional regulator compare
PFLU_RS28390 -1.8 -9.1 methionine biosynthesis protein MetW compare
PFLU_RS22835 -1.8 -7.9 amidotransferase compare
PFLU_RS12975 -1.8 -3.8 DUF934 domain-containing protein compare
PFLU_RS18655 -1.8 -1.2 NADH-quinone oxidoreductase subunit J compare
PFLU_RS24695 -1.8 -1.2 PTS glucose transporter subunit IIB compare
PFLU_RS12600 -1.8 -5.8 TIM barrel protein conserved
PFLU_RS20515 -1.8 -4.8 amidophosphoribosyltransferase compare
PFLU_RS01605 -1.7 -7.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS12610 -1.7 -7.6 inositol 2-dehydrogenase conserved
PFLU_RS14820 -1.7 -4.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS13365 -1.7 -1.7 hypothetical protein compare
PFLU_RS23310 -1.7 -8.2 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS18670 -1.7 -1.2 NADH-quinone oxidoreductase subunit M compare
PFLU_RS12605 -1.7 -7.7 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) conserved
PFLU_RS21420 -1.7 -6.8 patatin-like phospholipase family protein compare
PFLU_RS31530 -1.7 -0.9 transposase compare
PFLU_RS20580 -1.7 -8.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20510 -1.7 -9.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS29490 -1.7 -7.5 ribonuclease PH compare
PFLU_RS12590 -1.7 -6.2 myo-inosose-2 dehydratase conserved
PFLU_RS21060 -1.7 -3.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS23305 -1.7 -7.6 arginine N-succinyltransferase compare
PFLU_RS01895 -1.7 -6.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS19165 -1.7 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS25715 -1.7 -8.9 RNA polymerase-binding protein DksA compare
PFLU_RS09190 -1.7 -2.0 hypothetical protein compare
PFLU_RS11945 -1.7 -2.4 hypothetical protein compare
PFLU_RS19175 -1.6 -6.0 trigger factor compare
PFLU_RS24205 -1.6 -1.9 DNA binding protein compare
PFLU_RS18440 -1.6 -3.9 NAD(P)H:quinone oxidoreductase compare
PFLU_RS10850 -1.6 -4.4 IclR family transcriptional regulator compare
PFLU_RS03995 -1.6 -1.0 hypothetical protein compare
PFLU_RS28325 -1.6 -5.4 energy transducer TonB compare
PFLU_RS01910 -1.6 -1.4 sterol-binding protein compare
PFLU_RS05875 -1.6 -2.8 lysozyme compare
PFLU_RS17855 -1.6 -3.1 YjbF family lipoprotein compare
PFLU_RS08165 -1.6 -1.7 acyl carrier protein compare
PFLU_RS28655 -1.6 -10.0 HAD family hydrolase compare
PFLU_RS29290 -1.6 -2.9 hypothetical protein compare
PFLU_RS24025 -1.6 -7.9 quinolinate synthase NadA compare
PFLU_RS31510 -1.6 -0.9 transcriptional regulator compare
PFLU_RS07225 -1.5 -10.4 L-aspartate oxidase compare
PFLU_RS25595 -1.5 -1.0 exodeoxyribonuclease V subunit gamma compare
PFLU_RS20565 -1.5 -8.1 3-isopropylmalate dehydrogenase compare
PFLU_RS21300 -1.5 -3.3 cysteine hydrolase compare
PFLU_RS11285 -1.5 -1.8 hypothetical protein compare
PFLU_RS25750 -1.5 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS17920 -1.5 -1.6 acyltransferase compare
PFLU_RS16285 -1.5 -3.2 hypothetical protein compare
PFLU_RS04470 -1.5 -7.6 histidinol dehydrogenase compare
PFLU_RS15610 -1.5 -3.5 helix-turn-helix transcriptional regulator compare
PFLU_RS08065 -1.5 -6.1 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS04565 -1.5 -0.7 TMEM165/GDT1 family protein compare
PFLU_RS22735 -1.5 -7.9 bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH compare
PFLU_RS07650 -1.5 -6.8 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS19015 -1.5 -5.2 anti-sigma factor compare
PFLU_RS12980 -1.5 -6.7 nitrite/sulfite reductase compare
PFLU_RS00180 -1.5 -6.4 tryptophan synthase subunit beta compare
PFLU_RS24765 -1.5 -11.2 2-isopropylmalate synthase compare
PFLU_RS11100 -1.5 -3.8 integrase compare
PFLU_RS17295 -1.4 -2.4 type VI secretion system contractile sheath small subunit compare
PFLU_RS31290 -1.4 -1.2 EamA family transporter compare
PFLU_RS17150 -1.4 -3.6 hypothetical protein compare
PFLU_RS18410 -1.4 -4.3 response regulator compare
PFLU_RS15830 -1.4 -1.8 His-Xaa-Ser system protein HxsD compare
PFLU_RS12725 -1.4 -2.3 GNAT family N-acetyltransferase compare
PFLU_RS09055 -1.4 -3.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS28695 -1.4 -4.9 phosphoglycerate dehydrogenase compare
PFLU_RS02590 -1.4 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS21665 -1.4 -4.3 MinD/ParA family protein compare
PFLU_RS27370 -1.4 -8.1 anthranilate phosphoribosyltransferase compare
PFLU_RS03970 -1.4 -6.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS14545 -1.4 -1.1 hypothetical protein compare
PFLU_RS28535 -1.4 -9.2 dihydroxy-acid dehydratase compare
PFLU_RS08630 -1.4 -3.3 molybdopterin molybdotransferase MoeA compare
PFLU_RS15795 -1.4 -1.7 hypothetical protein compare
PFLU_RS12625 -1.4 -6.3 sugar ABC transporter ATP-binding protein conserved
PFLU_RS25800 -1.4 -5.3 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS31580 -1.4 -3.7 hypothetical protein compare
PFLU_RS29880 -1.4 -8.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS21290 -1.4 -2.0 hypothetical protein compare
PFLU_RS26020 -1.4 -7.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS14550 -1.4 -4.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS25735 -1.4 -2.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS21580 -1.3 -1.8 MOSC domain-containing protein compare
PFLU_RS09980 -1.3 -8.5 peptidase S41 compare
PFLU_RS25640 -1.3 -7.3 ketol-acid reductoisomerase compare
PFLU_RS23065 -1.3 -5.6 phosphate acyltransferase PlsX compare
PFLU_RS01615 -1.3 -3.6 DUF2164 domain-containing protein compare
PFLU_RS11255 -1.3 -5.2 LysR family transcriptional regulator conserved
PFLU_RS20625 -1.3 -1.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS03240 -1.3 -7.4 copper-translocating P-type ATPase compare
PFLU_RS21995 -1.3 -2.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS18435 -1.3 -3.0 arsenate reductase (glutaredoxin) compare
PFLU_RS27630 -1.3 -3.6 dethiobiotin synthase compare
PFLU_RS03870 -1.3 -5.6 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
PFLU_RS20540 -1.3 -7.2 phosphoribosylanthranilate isomerase compare
PFLU_RS00195 -1.3 -2.0 dodecin domain-containing protein compare
PFLU_RS14450 -1.3 -1.4 AzlD domain-containing protein compare
PFLU_RS29885 -1.3 -7.6 LysR family transcriptional regulator compare
PFLU_RS12230 -1.3 -3.5 carboxymuconolactone decarboxylase family protein compare
PFLU_RS22095 -1.3 -9.0 GTP diphosphokinase compare
PFLU_RS24805 -1.3 -3.7 helix-turn-helix domain-containing protein compare
PFLU_RS23240 -1.3 -7.2 magnesium transporter compare
PFLU_RS08125 -1.3 -2.1 integration host factor subunit beta compare
PFLU_RS02775 -1.3 -1.1 urease accessory protein UreF compare
PFLU_RS12660 -1.3 -4.3 hypothetical protein compare
PFLU_RS20335 -1.3 -1.8 hypothetical protein compare
PFLU_RS24280 -1.3 -2.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS14990 -1.3 -2.0 helix-turn-helix transcriptional regulator compare
PFLU_RS15000 -1.3 -2.3 HAMP domain-containing histidine kinase compare
PFLU_RS15220 -1.3 -2.7 hypothetical protein compare
PFLU_RS30160 -1.3 -2.0 ParB/RepB/Spo0J family partition protein compare
PFLU_RS24335 -1.3 -7.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS25730 -1.3 -7.6 PAS domain S-box protein compare
PFLU_RS29735 -1.3 -6.7 HlyC/CorC family transporter compare
PFLU_RS01610 -1.3 -6.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS18645 -1.3 -0.8 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS25740 -1.3 -4.0 polynucleotide adenylyltransferase PcnB compare
PFLU_RS28165 -1.3 -7.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS14830 -1.3 -4.3 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PFLU_RS10765 -1.2 -5.2 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS29875 -1.2 -9.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS05250 -1.2 -2.3 elongation factor 4 compare
PFLU_RS09495 -1.2 -2.1 helix-turn-helix transcriptional regulator compare
PFLU_RS25135 -1.2 -1.6 hypothetical protein compare
PFLU_RS03865 -1.2 -3.8 outer membrane protein assembly factor BamD compare
PFLU_RS04330 -1.2 -9.1 TIGR02099 family protein compare
PFLU_RS30730 -1.2 -1.6 helix-turn-helix domain-containing protein compare
PFLU_RS29760 -1.2 -6.9 phosphate ABC transporter permease PstA compare
PFLU_RS29360 -1.2 -1.2 cytochrome c5 family protein compare
PFLU_RS16320 -1.2 -3.9 DNA adenine methylase compare
PFLU_RS18625 -1.2 -1.8 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS28420 -1.2 -5.0 thiazole synthase compare
PFLU_RS10595 -1.2 -2.5 hypothetical protein compare
PFLU_RS00415 -1.2 -1.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS00535 -1.2 -2.0 DUF1127 domain-containing protein compare
PFLU_RS23680 -1.2 -7.3 long-chain fatty acid--CoA ligase compare
PFLU_RS15215 -1.2 -3.1 cytochrome b compare
PFLU_RS04415 -1.2 -2.8 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS08505 -1.2 -4.5 protease HtpX compare
PFLU_RS30515 -1.2 -2.9 Rieske 2Fe-2S domain-containing protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source m-Inositol in Pseudomonas fluorescens SBW25-INTG

For carbon source m-Inositol across organisms