Experiment set25S26 for Pseudomonas fluorescens SBW25-INTG

Compare to:

m-Inositol carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS29810 +5.4 36.1 LysR family transcriptional regulator compare
PFLU_RS00460 +5.4 41.6 glutamate/aspartate:proton symporter GltP compare
PFLU_RS29480 +5.0 42.8 exodeoxyribonuclease III compare
PFLU_RS05690 +5.0 7.5 Grx4 family monothiol glutaredoxin compare
PFLU_RS02275 +4.9 13.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS25865 +4.7 8.7 YhbY family RNA-binding protein compare
PFLU_RS14715 +4.5 24.4 protein-glutamate O-methyltransferase CheR compare
PFLU_RS29815 +4.3 20.9 aspartate ammonia-lyase compare
PFLU_RS25210 +4.0 23.7 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS25215 +4.0 27.2 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS25220 +3.8 19.2 ubiquinol oxidase subunit II compare
PFLU_RS25205 +3.7 16.3 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS25200 +3.6 21.8 protoheme IX farnesyltransferase compare
PFLU_RS00445 +3.2 7.7 hypothetical protein compare
PFLU_RS10430 +3.2 10.2 peptidase compare
PFLU_RS04165 +3.1 15.8 cell division protein ZapE compare
PFLU_RS00435 +2.4 16.4 PAS domain-containing protein compare
PFLU_RS02575 +2.4 12.5 GTPase HflX compare
PFLU_RS18735 +2.3 2.6 hypothetical protein compare
PFLU_RS23325 +2.3 15.6 GlxA family transcriptional regulator compare
PFLU_RS02580 +2.3 12.6 FtsH protease activity modulator HflK compare
PFLU_RS12915 +2.3 5.4 methyltransferase domain-containing protein compare
PFLU_RS24175 +2.3 12.0 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS07725 +2.2 4.4 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS18885 +2.2 4.9 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS02585 +2.1 7.5 protease modulator HflC compare
PFLU_RS31075 +1.9 6.9 hypothetical protein compare
PFLU_RS04155 +1.9 6.7 alpha/beta fold hydrolase compare
PFLU_RS22600 +1.9 4.3 RNA polymerase sigma factor SigX compare
PFLU_RS17120 +1.8 6.9 VWA domain-containing protein compare
PFLU_RS13085 +1.8 3.7 DUF1315 family protein compare
PFLU_RS22250 +1.8 3.6 hypothetical protein compare
PFLU_RS24690 +1.7 11.8 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS14050 +1.7 2.0 hypothetical protein compare
PFLU_RS29780 +1.7 9.4 acyl-CoA thioesterase compare
PFLU_RS00455 +1.7 4.7 hypothetical protein compare
PFLU_RS13010 +1.6 4.8 Fe-S biogenesis protein NfuA compare
PFLU_RS17115 +1.6 7.3 DUF4381 domain-containing protein compare
PFLU_RS04175 +1.6 8.4 acyl-CoA dehydrogenase compare
PFLU_RS28905 +1.6 11.3 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS17105 +1.6 7.1 MoxR family ATPase compare
PFLU_RS09670 +1.5 1.9 integrating conjugative element protein compare
PFLU_RS17125 +1.5 7.2 VWA domain-containing protein compare
PFLU_RS30335 +1.5 6.1 AlpA family phage regulatory protein compare
PFLU_RS04485 +1.5 9.5 uracil phosphoribosyltransferase compare
PFLU_RS00040 +1.5 12.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS23235 +1.4 2.5 Arc family DNA-binding protein compare
PFLU_RS21110 +1.4 2.0 AAA family ATPase compare
PFLU_RS08670 +1.3 8.3 heme lyase CcmF/NrfE family subunit compare
PFLU_RS14775 +1.3 2.3 enoyl-CoA hydratase compare
PFLU_RS08655 +1.3 5.3 heme ABC transporter permease compare
PFLU_RS17340 +1.3 2.6 AAA family ATPase compare
PFLU_RS17110 +1.3 3.4 DUF58 domain-containing protein compare
PFLU_RS18135 +1.3 3.0 ABC transporter substrate-binding protein compare
PFLU_RS12615 +1.3 3.3 oxidoreductase compare
PFLU_RS03585 +1.2 1.6 hypothetical protein compare
PFLU_RS06055 +1.2 1.7 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS05660 +1.2 8.0 glycerol kinase GlpK compare
PFLU_RS17130 +1.2 2.9 protein BatD compare
PFLU_RS18080 +1.2 2.6 helix-turn-helix transcriptional regulator compare
PFLU_RS16785 +1.2 1.7 GAF domain-containing protein compare
PFLU_RS05340 +1.2 2.5 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS04140 +1.2 2.6 response regulator transcription factor compare
PFLU_RS06310 +1.2 5.0 sigma E protease regulator RseP compare
PFLU_RS23350 +1.2 6.9 ABC transporter substrate-binding protein compare
PFLU_RS06800 +1.2 7.6 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
PFLU_RS19720 +1.2 1.9 hypothetical protein compare
PFLU_RS19555 +1.2 1.9 histidine phosphatase family protein compare
PFLU_RS00440 +1.2 7.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29380 +1.2 7.6 D-amino acid dehydrogenase compare
PFLU_RS19470 +1.2 2.3 ABC transporter ATP-binding protein compare
PFLU_RS07630 +1.2 8.3 transglycosylase SLT domain-containing protein compare
PFLU_RS13825 +1.2 1.3 hypothetical protein compare
PFLU_RS08665 +1.2 4.3 cytochrome c maturation protein CcmE compare
PFLU_RS14710 +1.1 6.1 response regulator compare
PFLU_RS14020 +1.1 1.9 hypothetical protein compare
PFLU_RS17060 +1.1 1.3 monooxygenase compare
PFLU_RS13715 +1.1 1.0 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS23315 +1.1 5.5 aspartate aminotransferase family protein compare
PFLU_RS25925 +1.1 1.9 RnfH family protein compare
PFLU_RS26955 +1.1 6.7 sugar nucleotide-binding protein compare
PFLU_RS15790 +1.1 2.6 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS00935 +1.1 6.0 EAL domain-containing protein compare
PFLU_RS08660 +1.1 3.2 heme exporter protein CcmD compare
PFLU_RS23345 +1.1 6.8 ABC transporter permease compare
PFLU_RS00880 +1.1 6.2 DUF927 domain-containing protein compare
PFLU_RS07735 +1.1 2.7 PilZ domain-containing protein compare
PFLU_RS22535 +1.1 7.3 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS05105 +1.0 1.6 tetratricopeptide repeat protein compare
PFLU_RS29400 +1.0 1.6 DUF1127 domain-containing protein compare
PFLU_RS21290 +1.0 2.4 hypothetical protein compare
PFLU_RS23100 +1.0 2.6 ribonuclease E compare
PFLU_RS05060 +1.0 2.5 GIY-YIG nuclease family protein compare
PFLU_RS20435 +1.0 2.6 heavy metal response regulator transcription factor compare
PFLU_RS16935 +1.0 1.9 CoA ester lyase compare
PFLU_RS12725 +1.0 1.4 GNAT family N-acetyltransferase compare
PFLU_RS00360 +1.0 5.4 hypothetical protein compare
PFLU_RS29745 +1.0 2.0 response regulator compare
PFLU_RS21925 +1.0 2.1 YecA family protein compare
PFLU_RS15380 +1.0 1.9 DUF1652 domain-containing protein compare
PFLU_RS08980 +1.0 7.1 branched-chain amino acid transport system II carrier protein compare
PFLU_RS03555 +1.0 0.7 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS29385 +1.0 7.5 AsnC family transcriptional regulator compare
PFLU_RS02280 +1.0 6.4 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS14990 +1.0 2.4 helix-turn-helix transcriptional regulator compare
PFLU_RS13200 +1.0 2.1 Ldh family oxidoreductase compare
PFLU_RS17095 +1.0 7.3 NAD-glutamate dehydrogenase compare
PFLU_RS15000 +1.0 1.9 HAMP domain-containing histidine kinase compare
PFLU_RS08100 +1.0 3.3 histidinol-phosphate transaminase compare
PFLU_RS06430 +1.0 4.5 RNA polymerase sigma factor RpoS compare
PFLU_RS23340 +1.0 7.4 ABC transporter permease compare
PFLU_RS18345 +0.9 2.7 hypothetical protein compare
PFLU_RS14300 +0.9 1.5 response regulator transcription factor compare
PFLU_RS21910 +0.9 7.2 BamA/TamA family outer membrane protein compare
PFLU_RS12580 +0.9 4.0 MurR/RpiR family transcriptional regulator compare
PFLU_RS22100 +0.9 5.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PFLU_RS02045 +0.9 7.9 glutamate synthase large subunit compare
PFLU_RS30855 +0.9 2.3 MerR family transcriptional regulator compare
PFLU_RS18725 +0.9 1.1 alpha/beta hydrolase compare
PFLU_RS17675 +0.9 2.3 hypothetical protein compare
PFLU_RS11880 +0.9 1.9 general secretion pathway protein GspL compare
PFLU_RS15995 +0.9 2.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS31200 +0.9 2.3 hypothetical protein compare
PFLU_RS13215 +0.9 2.2 LysR family transcriptional regulator compare
PFLU_RS24355 +0.9 2.4 heme oxygenase compare
PFLU_RS01015 +0.9 4.1 PhnD/SsuA/transferrin family substrate-binding protein compare
PFLU_RS15310 +0.9 1.3 YgdI/YgdR family lipoprotein compare
PFLU_RS31360 +0.9 4.0 hypothetical protein compare
PFLU_RS05910 +0.9 1.4 response regulator transcription factor compare
PFLU_RS15515 +0.9 1.8 hypothetical protein compare
PFLU_RS07905 +0.9 3.6 response regulator compare
PFLU_RS29045 +0.9 1.8 FadR family transcriptional regulator compare
PFLU_RS23390 +0.9 1.3 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS11975 +0.9 2.0 histidine phosphatase family protein compare
PFLU_RS27350 +0.9 3.9 OsmC family protein compare
PFLU_RS28910 +0.9 4.6 glycine cleavage system protein GcvH compare
PFLU_RS15435 +0.9 2.3 hypothetical protein compare
PFLU_RS04780 +0.9 1.8 hypothetical protein compare
PFLU_RS19995 +0.9 1.9 Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB compare
PFLU_RS20845 +0.9 1.1 hypothetical protein compare
PFLU_RS10405 +0.9 2.0 helix-turn-helix transcriptional regulator compare
PFLU_RS31835 +0.9 1.5 hypothetical protein compare
PFLU_RS00155 +0.9 4.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS00465 +0.8 3.6 spore maturation protein compare
PFLU_RS12100 +0.8 2.6 AraC family transcriptional regulator compare
PFLU_RS23260 +0.8 3.0 carbon storage regulator CsrA compare
PFLU_RS25275 +0.8 3.2 class II aldolase/adducin family protein compare
PFLU_RS08490 +0.8 0.9 DEAD/DEAH box helicase compare
PFLU_RS25095 +0.8 4.1 cytochrome b561 compare
PFLU_RS06625 +0.8 2.7 ABC transporter ATP-binding protein compare
PFLU_RS02515 +0.8 1.8 flagellar motor protein MotB compare
PFLU_RS20705 +0.8 2.2 hypothetical protein compare
PFLU_RS17955 +0.8 3.2 hypothetical protein compare
PFLU_RS28340 +0.8 2.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
PFLU_RS04080 +0.8 2.7 hypothetical protein compare
PFLU_RS05695 +0.8 3.7 bacterioferritin compare
PFLU_RS24905 +0.8 5.2 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
PFLU_RS31315 +0.8 2.0 hypothetical protein compare
PFLU_RS08675 +0.8 2.6 DsbE family thiol:disulfide interchange protein compare
PFLU_RS03055 +0.8 2.0 methyl-accepting chemotaxis protein compare
PFLU_RS22470 +0.8 1.0 hypothetical protein compare
PFLU_RS15910 +0.8 0.7 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS07560 +0.8 3.2 allophanate hydrolase subunit 1 compare
PFLU_RS19255 +0.8 2.4 NAD(P)-dependent oxidoreductase compare
PFLU_RS16845 +0.8 1.8 helix-turn-helix transcriptional regulator compare
PFLU_RS14780 +0.8 2.9 acyl-CoA dehydrogenase compare
PFLU_RS16460 +0.8 2.4 PIG-L family deacetylase compare
PFLU_RS31525 +0.8 2.2 transposase compare
PFLU_RS30660 +0.8 1.8 histidine phosphatase family protein compare
PFLU_RS17890 +0.8 2.6 GDP-mannose 4,6-dehydratase compare
PFLU_RS08105 +0.8 4.1 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS08485 +0.8 0.9 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS13670 +0.8 1.9 (2Fe-2S)-binding protein compare
PFLU_RS01640 +0.8 3.3 divergent polysaccharide deacetylase family protein compare
PFLU_RS12025 +0.8 2.3 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS09625 +0.8 1.4 NAD-dependent epimerase/dehydratase family protein compare
PFLU_RS31800 +0.8 1.2 hypothetical protein compare
PFLU_RS19450 +0.8 3.9 ABC transporter substrate-binding protein compare
PFLU_RS12010 +0.8 2.9 amino acid metabolite efflux pump compare
PFLU_RS13450 +0.8 3.4 SDR family oxidoreductase compare
PFLU_RS21635 +0.8 2.7 flagellar motor protein compare
PFLU_RS17640 +0.8 2.3 hemerythrin domain-containing protein compare
PFLU_RS17750 +0.7 0.7 pirin family protein compare
PFLU_RS07540 +0.7 0.7 class II glutamine amidotransferase compare
PFLU_RS13760 +0.7 0.9 hypothetical protein compare
PFLU_RS13470 +0.7 1.9 MgtC/SapB family protein compare
PFLU_RS25940 +0.7 5.3 FCD domain-containing protein compare
PFLU_RS23700 +0.7 2.0 PA2169 family four-helix-bundle protein compare
PFLU_RS25870 +0.7 4.1 hypothetical protein compare
PFLU_RS19000 +0.7 3.2 cytochrome b compare
PFLU_RS09730 +0.7 1.7 TIGR03761 family integrating conjugative element protein compare
PFLU_RS16450 +0.7 2.0 methyltransferase domain-containing protein compare
PFLU_RS21625 +0.7 4.4 ParA family protein compare
PFLU_RS24900 +0.7 2.4 tRNA guanosine(34) transglycosylase Tgt compare
PFLU_RS09675 +0.7 3.1 hypothetical protein compare
PFLU_RS31490 +0.7 0.7 hypothetical protein compare
PFLU_RS17620 +0.7 2.2 hypothetical protein compare
PFLU_RS11410 +0.7 2.1 glutamine amidotransferase family protein compare
PFLU_RS19045 +0.7 2.0 spore coat protein U domain-containing protein compare
PFLU_RS05130 +0.7 3.4 HAAAP family serine/threonine permease compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source m-Inositol in Pseudomonas fluorescens SBW25-INTG

For carbon source m-Inositol across organisms