Experiment set25IT093 for Burkholderia phytofirmans PsJN

Compare to:

Outgrowth after Tn7 transformation

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -5.8 -5.1 phosphoglycerate kinase compare
BPHYT_RS02965 -5.5 -3.8 membrane protein compare
BPHYT_RS09500 -5.5 -5.3 glucose-6-phosphate isomerase compare
BPHYT_RS16710 -4.8 -1.8 LysR family transcriptional regulator compare
BPHYT_RS06610 -4.5 -2.3 triosephosphate isomerase compare
BPHYT_RS02590 -3.7 -9.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS14845 -3.4 -2.3 cysteine synthase compare
BPHYT_RS12465 -3.3 -4.7 inositol monophosphatase compare
BPHYT_RS08235 -3.2 -1.7 nucleoprotein, Hfg, host factor I compare
BPHYT_RS16835 -3.2 -7.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS01485 -3.2 -1.7 histidine kinase compare
BPHYT_RS06530 -3.1 -2.8 membrane protein compare
BPHYT_RS16255 -3.1 -5.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16840 -2.7 -3.6 transketolase compare
BPHYT_RS14865 -2.7 -5.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS03725 -2.7 -2.3 serine hydroxymethyltransferase compare
BPHYT_RS33920 -2.6 -9.6 type II citrate synthase compare
BPHYT_RS14855 -2.6 -2.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS09515 -2.6 -5.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS33580 -2.5 -5.7 geranyltranstransferase compare
BPHYT_RS16880 -2.5 -2.7 malic enzyme compare
BPHYT_RS06405 -2.5 -10.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS06685 -2.3 -2.9 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS28595 -2.3 -1.5 glyoxalase compare
BPHYT_RS17700 -2.2 -4.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS03640 -2.2 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS04290 -2.1 -2.3 glycosyl transferase family 2 compare
BPHYT_RS06175 -2.1 -3.4 LPS biosynthesis compare
BPHYT_RS35215 -2.1 -1.9 dehydrogenase compare
BPHYT_RS16245 -2.1 -3.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS23840 -2.0 -3.1 methyltransferase compare
BPHYT_RS01455 -2.0 -1.4 peptide deformylase compare
BPHYT_RS12845 -2.0 -13.0 ATPase compare
BPHYT_RS18910 -1.9 -2.1 FlgN compare
BPHYT_RS01620 -1.8 -8.0 sensor histidine kinase compare
BPHYT_RS04965 -1.7 -5.6 ATP-binding protein compare
BPHYT_RS09480 -1.7 -1.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS15075 -1.7 -2.0 dihydrokaempferol 4-reductase compare
BPHYT_RS02860 -1.7 -1.2 membrane protein compare
BPHYT_RS28720 -1.7 -2.9 shikimate dehydrogenase compare
BPHYT_RS16340 -1.7 -5.1 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS05705 -1.6 -1.5 hypothetical protein compare
BPHYT_RS12055 -1.6 -12.0 phosphoenolpyruvate synthase compare
BPHYT_RS04955 -1.6 -2.4 methionyl-tRNA synthetase compare
BPHYT_RS21530 -1.6 -2.7 RNA polymerase subunit sigma-24 compare
BPHYT_RS02610 -1.6 -4.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17095 -1.5 -4.0 proline--tRNA ligase compare
BPHYT_RS08960 -1.5 -1.6 threonine synthase compare
BPHYT_RS20245 -1.5 -5.7 iron ABC transporter substrate-binding protein compare
BPHYT_RS03015 -1.5 -1.5 aldolase compare
BPHYT_RS15620 -1.5 -2.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS23445 -1.5 -2.3 hexuronate transporter compare
BPHYT_RS33840 -1.5 -6.7 amidophosphoribosyltransferase compare
BPHYT_RS12840 -1.5 -3.3 pyruvate dehydrogenase compare
BPHYT_RS16345 -1.4 -3.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS28620 -1.4 -1.6 enoyl-CoA hydratase compare
BPHYT_RS17380 -1.4 -8.7 ribulose-phosphate 3-epimerase compare
BPHYT_RS18255 -1.4 -2.0 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS09330 -1.4 -7.6 phytoene synthase compare
BPHYT_RS05615 -1.3 -2.2 hypothetical protein compare
BPHYT_RS34295 -1.3 -1.2 fimbrial protein compare
BPHYT_RS17890 -1.3 -2.7 shikimate kinase compare
BPHYT_RS02130 -1.3 -2.9 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS06990 -1.3 -1.9 membrane protein compare
BPHYT_RS09160 -1.3 -3.0 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS17520 -1.3 -4.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS24285 -1.3 -1.9 TetR family transcriptional regulator compare
BPHYT_RS04370 -1.2 -1.3 glycosyl transferase compare
BPHYT_RS27920 -1.2 -1.3 tricarballylate utilization protein B compare
BPHYT_RS06375 -1.2 -4.8 ribonuclease compare
BPHYT_RS02975 -1.2 -2.8 membrane protein compare
BPHYT_RS25500 -1.2 -1.1 hypothetical protein compare
BPHYT_RS24590 -1.2 -1.2 DeoR faimly transcriptional regulator compare
BPHYT_RS33645 -1.2 -4.1 homoserine kinase compare
BPHYT_RS04890 -1.2 -1.0 cobalamin biosynthesis protein CobD compare
BPHYT_RS27455 -1.2 -1.8 rod shape-determining protein MreB compare
BPHYT_RS04005 -1.2 -3.0 GDP-L-fucose synthase compare
BPHYT_RS14180 -1.2 -2.9 membrane protein compare
BPHYT_RS19260 -1.2 -1.2 hypothetical protein compare
BPHYT_RS18610 -1.2 -3.4 lytic transglycosylase compare
BPHYT_RS06190 -1.2 -1.7 heptosyltransferase compare
BPHYT_RS18835 -1.1 -1.0 flagellar biosynthesis protein FliR compare
BPHYT_RS28670 -1.1 -2.0 MFS transporter compare
BPHYT_RS14060 -1.1 -1.9 peptidase M23 compare
BPHYT_RS06900 -1.1 -5.7 aspartate aminotransferase compare
BPHYT_RS06075 -1.1 -4.6 hypothetical protein compare
BPHYT_RS11705 -1.1 -0.8 hypothetical protein compare
BPHYT_RS23910 -1.1 -2.2 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS24315 -1.1 -1.9 phosphoribosyltransferase compare
BPHYT_RS05730 -1.1 -4.1 hypothetical protein compare
BPHYT_RS15615 -1.1 -2.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS11310 -1.1 -1.3 LysR family transcriptional regulator compare
BPHYT_RS18765 -1.1 -5.1 flagellar biosynthesis protein FliS compare
BPHYT_RS07050 -1.1 -1.2 membrane protein compare
BPHYT_RS08125 -1.1 -6.3 ATPase compare
BPHYT_RS01625 -1.1 -0.7 chemotaxis protein CheY compare
BPHYT_RS25935 -1.0 -1.5 type III secretion protein compare
BPHYT_RS08135 -1.0 -1.5 hypothetical protein compare
BPHYT_RS23540 -1.0 -1.3 RND transporter compare
BPHYT_RS03730 -1.0 -3.0 transcriptional repressor NrdR compare
BPHYT_RS23270 -1.0 -0.8 enoyl-CoA hydratase compare
BPHYT_RS30720 -1.0 -1.9 hypothetical protein compare
BPHYT_RS28360 -1.0 -1.2 carboxymuconolactone decarboxylase compare
BPHYT_RS17685 -1.0 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS20225 -1.0 -3.3 taurine catabolism dioxygenase tauD/tfdA compare
BPHYT_RS16675 -1.0 -1.1 dihydroorotase compare
BPHYT_RS11765 -1.0 -1.0 polyamine ABC transporter permease compare
BPHYT_RS33030 -1.0 -0.8 hypothetical protein compare
BPHYT_RS30450 -1.0 -1.0 ABC transporter permease compare
BPHYT_RS12725 -1.0 -6.5 regulator compare
BPHYT_RS36385 -1.0 -1.0 TetR family transcriptional regulator compare
BPHYT_RS03110 -1.0 -2.0 MarR family transcriptional regulator compare
BPHYT_RS17690 -1.0 -5.7 imidazole glycerol phosphate synthase compare
BPHYT_RS05650 -1.0 -1.0 hypothetical protein compare
BPHYT_RS03405 -1.0 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS09355 -1.0 -1.7 LysR family transcriptional regulator compare
BPHYT_RS18660 -0.9 -2.2 hypothetical protein compare
BPHYT_RS34810 -0.9 -2.4 RND transporter compare
BPHYT_RS23480 -0.9 -2.5 hypothetical protein compare
BPHYT_RS17760 -0.9 -4.7 ABC transporter permease compare
BPHYT_RS30795 -0.9 -1.2 short-chain dehydrogenase compare
BPHYT_RS04950 -0.9 -5.6 hypothetical protein compare
BPHYT_RS12925 -0.9 -0.9 exodeoxyribonuclease III compare
BPHYT_RS12615 -0.9 -1.3 dihydrodipicolinate synthase compare
BPHYT_RS20240 -0.9 -2.7 iron reductase compare
BPHYT_RS33370 -0.9 -1.4 LysR family transcriptional regulator compare
BPHYT_RS18260 -0.9 -4.2 phenylacetic acid degradation protein compare
BPHYT_RS22860 -0.9 -1.0 chemotaxis protein CheY compare
BPHYT_RS03645 -0.9 -1.6 tRNA dimethylallyltransferase compare
BPHYT_RS03170 -0.9 -2.2 membrane protein compare
BPHYT_RS06985 -0.9 -2.7 fumarate hydratase compare
BPHYT_RS35585 -0.9 -1.0 hypothetical protein compare
BPHYT_RS29855 -0.9 -0.9 protein-tyrosine-phosphatase compare
BPHYT_RS05455 -0.8 -1.6 AraC family transcriptional regulator compare
BPHYT_RS23940 -0.8 -1.2 GntR family transcriptional regulator compare
BPHYT_RS02285 -0.8 -3.0 cell division protein compare
BPHYT_RS08150 -0.8 -0.9 membrane protein compare
BPHYT_RS14370 -0.8 -1.7 ribonuclease III compare
BPHYT_RS11655 -0.8 -1.4 chromosome partitioning protein ParB compare
BPHYT_RS04945 -0.8 -7.2 membrane protein compare
BPHYT_RS24270 -0.8 -1.5 C4-dicarboxylate ABC transporter substrate-binding protein compare
BPHYT_RS15290 -0.8 -2.1 tRNA-Arg compare
BPHYT_RS05155 -0.8 -2.7 acetyltransferase GCN5 compare
BPHYT_RS04285 -0.8 -1.0 rhamnosyltransferase compare
BPHYT_RS08955 -0.8 -2.7 homoserine dehydrogenase compare
BPHYT_RS23265 -0.8 -1.8 methylcrotonoyl-CoA carboxylase compare
BPHYT_RS35655 -0.8 -1.4 hypothetical protein compare
BPHYT_RS17530 -0.8 -2.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS20185 -0.8 -1.0 sugar transferase compare
BPHYT_RS00960 -0.8 -0.9 recombinase RecA compare
BPHYT_RS12150 -0.8 -5.0 PII uridylyl-transferase compare
BPHYT_RS09315 -0.8 -0.7 chemotaxis protein CheY compare
BPHYT_RS03655 -0.8 -1.5 membrane protein compare
BPHYT_RS09565 -0.8 -1.5 acetyl-CoA acetyltransferase compare
BPHYT_RS22360 -0.8 -2.0 response regulator receiver compare
BPHYT_RS18790 -0.8 -4.5 ATP synthase compare
BPHYT_RS01425 -0.8 -3.1 3-phosphoglycerate dehydrogenase compare
BPHYT_RS22400 -0.8 -1.0 hypothetical protein compare
BPHYT_RS31060 -0.8 -1.0 capsular polysaccharide biosynthesis protein compare
BPHYT_RS18265 -0.8 -1.7 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS28605 -0.8 -1.5 NADPH-dependent FMN reductase compare
BPHYT_RS17675 -0.8 -1.9 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS36525 -0.8 -3.6 hypothetical protein compare
BPHYT_RS07540 -0.8 -1.0 hypothetical protein compare
BPHYT_RS02885 -0.8 -4.4 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS13645 -0.8 -6.0 threonine--tRNA ligase compare
BPHYT_RS35080 -0.8 -1.1 short-chain dehydrogenase compare
BPHYT_RS18635 -0.8 -1.7 LamB/YcsF family protein compare
BPHYT_RS08850 -0.8 -1.1 transcriptional regulator compare
BPHYT_RS01955 -0.8 -2.8 hypothetical protein compare
BPHYT_RS05565 -0.8 -1.5 membrane protein compare
BPHYT_RS17715 -0.8 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS34805 -0.8 -4.1 ABC transporter compare
BPHYT_RS10715 -0.8 -1.8 acyl-CoA dehydrogenase compare
BPHYT_RS25875 -0.8 -1.0 type III secretion protein compare
BPHYT_RS28485 -0.8 -0.8 GntR family transcriptional regulator compare
BPHYT_RS00705 -0.8 -1.0 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS15950 -0.7 -3.3 tyrosine recombinase XerD compare
BPHYT_RS11555 -0.7 -1.2 allantoinase compare
BPHYT_RS09850 -0.7 -1.1 molybdopterin oxidoreductase compare
BPHYT_RS26750 -0.7 -1.6 aldolase compare
BPHYT_RS10850 -0.7 -1.1 LysR family transcriptional regulator compare
BPHYT_RS07370 -0.7 -3.7 hypothetical protein compare
BPHYT_RS17860 -0.7 -2.1 transposase compare
BPHYT_RS06410 -0.7 -1.5 transcriptional regulator compare
BPHYT_RS09905 -0.7 -1.0 hypothetical protein compare
BPHYT_RS14450 -0.7 -2.3 hypothetical protein compare
BPHYT_RS12530 -0.7 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS20380 -0.7 -1.2 LysR family transcriptional regulator compare
BPHYT_RS18710 -0.7 -2.5 membrane protein compare
BPHYT_RS04940 -0.7 -1.4 hypothetical protein compare
BPHYT_RS25270 -0.7 -1.3 multidrug MFS transporter compare
BPHYT_RS17670 -0.7 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS09650 -0.7 -1.4 hypothetical protein compare
BPHYT_RS23275 -0.7 -2.1 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS34280 -0.7 -1.5 hypothetical protein compare
BPHYT_RS18970 -0.7 -4.2 chemotaxis protein compare
BPHYT_RS13245 -0.7 -2.6 hypothetical protein compare
BPHYT_RS09810 -0.7 -2.2 hypothetical protein compare
BPHYT_RS01005 -0.7 -2.7 alpha/beta hydrolase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in tn7 efficiency experiments