Experiment set24S420 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Others16 rep C; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.2 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.9 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -4.9 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2318 -3.4 -24.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_71 -3.2 -2.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3661 -3.2 -15.2 hypothetical protein compare
Pf6N2E2_2320 -3.1 -10.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4706 -3.0 -4.4 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3842 -2.9 -2.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3248 -2.9 -8.2 Probable transmembrane protein compare
Pf6N2E2_3667 -2.9 -8.7 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3940 -2.8 -3.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5668 -2.8 -4.3 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3645 -2.8 -9.8 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_5338 -2.7 -21.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5339 -2.7 -16.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2822 -2.6 -6.5 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3786 -2.5 -11.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_4473 -2.5 -8.4 HlyD family secretion protein compare
Pf6N2E2_3932 -2.5 -2.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_63 -2.5 -1.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3610 -2.4 -1.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5337 -2.4 -16.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5177 -2.4 -2.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5906 -2.4 -1.6 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_64 -2.4 -1.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5647 -2.4 -3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_3171 -2.3 -1.0 hypothetical protein compare
Pf6N2E2_5679 -2.2 -4.0 hypothetical protein compare
Pf6N2E2_77 -2.2 -1.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2139 -2.2 -3.3 Paraquat-inducible protein A compare
Pf6N2E2_3785 -2.2 -7.3 Twin-arginine translocation protein TatB compare
Pf6N2E2_3252 -2.1 -1.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2753 -2.1 -4.1 HtrA protease/chaperone protein compare
Pf6N2E2_3251 -2.1 -6.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3480 -2.1 -0.9 Transcriptional regulator, ArsR family compare
Pf6N2E2_2674 -2.1 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_4187 -2.1 -16.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_66 -2.0 -1.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_50 -2.0 -4.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4826 -2.0 -1.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3656 -2.0 -12.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_3665 -2.0 -1.2 serine/threonine protein kinase compare
Pf6N2E2_3841 -1.9 -1.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4752 -1.9 -8.3 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_3240 -1.9 -0.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4720 -1.9 -12.3 Sarcosine oxidase alpha subunit (EC 1.5.3.1) compare
Pf6N2E2_3751 -1.9 -7.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3752 -1.9 -11.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3569 -1.9 -2.5 hypothetical protein compare
Pf6N2E2_4048 -1.9 -1.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3687 -1.8 -1.2 FIG00959437: hypothetical protein compare
Pf6N2E2_5257 -1.8 -6.7 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_4803 -1.8 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5665 -1.8 -4.7 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_962 -1.8 -1.1 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_2552 -1.8 -5.3 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2317 -1.8 -5.1 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4472 -1.8 -8.5 ABC-type multidrug transport system, permease component compare
Pf6N2E2_279 -1.7 -7.3 Isocitrate lyase (EC 4.1.3.1) compare
Pf6N2E2_445 -1.7 -9.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4704 -1.7 -6.5 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) compare
Pf6N2E2_603 -1.7 -1.1 FIG00953934: hypothetical protein compare
Pf6N2E2_2561 -1.7 -1.1 FIG00955434: hypothetical protein compare
Pf6N2E2_4351 -1.7 -10.7 Predicted signal transduction protein compare
Pf6N2E2_4471 -1.7 -4.2 ABC-type multidrug transport system, permease component compare
Pf6N2E2_1735 -1.6 -1.9 PhnB protein compare
Pf6N2E2_2188 -1.6 -1.1 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_4701 -1.6 -7.1 FIG00953113: hypothetical protein compare
Pf6N2E2_2071 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_51 -1.6 -6.3 hypothetical protein compare
Pf6N2E2_5622 -1.6 -1.0 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_302 -1.6 -1.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5258 -1.6 -2.8 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_4825 -1.6 -1.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3253 -1.6 -1.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5020 -1.6 -1.8 FIG00955339: hypothetical protein compare
Pf6N2E2_5666 -1.6 -1.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5455 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_2656 -1.6 -1.5 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_3839 -1.5 -1.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4596 -1.5 -1.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5728 -1.5 -1.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2088 -1.5 -0.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2688 -1.5 -1.0 YD repeat protein compare
Pf6N2E2_3264 -1.5 -6.9 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_6075 -1.5 -1.0 Chromosome segregation ATPases compare
Pf6N2E2_2487 -1.5 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_3663 -1.5 -9.3 Glycosyl transferase compare
Pf6N2E2_2473 -1.5 -0.6 Major outer membrane lipoprotein I compare
Pf6N2E2_4721 -1.5 -2.2 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf6N2E2_339 -1.4 -0.9 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_4075 -1.4 -8.1 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3702 -1.4 -0.9 FIG00953907: hypothetical protein compare
Pf6N2E2_953 -1.4 -0.9 FIG00958851: hypothetical protein compare
Pf6N2E2_5520 -1.4 -4.9 Sensory box histidine kinase compare
Pf6N2E2_4307 -1.4 -1.6 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_3630 -1.4 -5.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3659 -1.4 -7.5 Protein fixF compare
Pf6N2E2_425 -1.4 -0.9 FIG00957304: hypothetical protein compare
Pf6N2E2_946 -1.4 -0.9 Transcriptional regulator, LysR family compare
Pf6N2E2_226 -1.4 -2.0 2,3-dihydroxybiphenyl 1,2-dioxygenase compare
Pf6N2E2_4072 -1.4 -5.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2474 -1.4 -7.8 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4597 -1.4 -1.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4797 -1.3 -2.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_1246 -1.3 -0.9 FIG00961372: hypothetical protein compare
Pf6N2E2_3984 -1.3 -8.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4423 -1.3 -1.2 FIG00953342: hypothetical protein compare
Pf6N2E2_4969 -1.3 -0.5 hypothetical protein compare
Pf6N2E2_4719 -1.3 -4.7 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf6N2E2_4710 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_5676 -1.3 -0.9 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3844 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_5394 -1.3 -3.4 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_3573 -1.3 -0.8 HupE-UreJ family metal transporter compare
Pf6N2E2_4700 -1.2 -0.8 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_3763 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_665 -1.2 -1.2 Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-) compare
Pf6N2E2_3664 -1.2 -6.5 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_1797 -1.2 -0.8 Transcriptional regulator compare
Pf6N2E2_2073 -1.2 -2.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2217 -1.2 -1.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_750 -1.2 -2.3 Transcriptional regulator, DeoR family compare
Pf6N2E2_5073 -1.2 -5.8 Large-conductance mechanosensitive channel compare
Pf6N2E2_295 -1.2 -0.8 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_4702 -1.2 -6.0 DgcA Dimethylglycine demethylase subunit A compare
Pf6N2E2_5242 -1.2 -1.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_74 -1.2 -0.8 DedD protein compare
Pf6N2E2_2508 -1.2 -3.7 hypothetical protein compare
Pf6N2E2_3283 -1.2 -4.0 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_1905 -1.2 -0.8 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_5452 -1.2 -1.3 hypothetical protein compare
Pf6N2E2_2117 -1.2 -7.9 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_1783 -1.2 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5550 -1.2 -2.3 Copper resistance protein C precursor compare
Pf6N2E2_4717 -1.2 -5.7 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Pf6N2E2_1412 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_719 -1.2 -0.6 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_5262 -1.1 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_4279 -1.1 -7.6 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2277 -1.1 -2.3 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_1893 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_3938 -1.1 -6.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4718 -1.1 -4.7 Sarcosine oxidase beta subunit (EC 1.5.3.1) compare
Pf6N2E2_3334 -1.1 -6.4 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_3727 -1.1 -1.0 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_3521 -1.1 -5.1 Sensor histidine kinase/response regulator compare
Pf6N2E2_2476 -1.1 -1.4 Arylesterase precursor (EC 3.1.1.2) compare
Pf6N2E2_5175 -1.1 -0.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3825 -1.1 -1.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_5593 -1.1 -2.1 Leucyl-tRNA synthetase compare
Pf6N2E2_217 -1.1 -1.0 Signal transduction histidine kinase compare
Pf6N2E2_2833 -1.1 -1.0 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf6N2E2_4762 -1.1 -0.7 Biotin synthesis protein BioH compare
Pf6N2E2_1959 -1.1 -0.7 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_472 -1.1 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_318 -1.1 -0.7 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_4077 -1.1 -0.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4564 -1.0 -3.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3558 -1.0 -2.3 DnaJ-class molecular chaperone CbpA compare
Pf6N2E2_734 -1.0 -0.7 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1626 -1.0 -3.6 Putative ATP-binding component of a transport system compare
Pf6N2E2_5153 -1.0 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_2264 -1.0 -1.0 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_189 -1.0 -1.4 regulatory protein, putative compare
Pf6N2E2_1834 -1.0 -1.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_666 -1.0 -3.3 Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-) compare
Pf6N2E2_443 -1.0 -0.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1581 -1.0 -2.8 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_2186 -1.0 -3.2 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_1696 -1.0 -1.7 Alkanesulfonates-binding protein compare
Pf6N2E2_5496 -1.0 -0.7 FIG00953991: hypothetical protein compare
Pf6N2E2_453 -1.0 -0.6 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2701 -1.0 -2.1 FIG00954689: hypothetical protein compare
Pf6N2E2_1671 -1.0 -0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_4277 -1.0 -6.6 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2788 -1.0 -0.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_5545 -1.0 -0.7 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_922 -1.0 -1.5 FIG00794167: hypothetical protein compare
Pf6N2E2_5527 -1.0 -1.7 Cold shock protein CspC compare
Pf6N2E2_2752 -1.0 -1.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4618 -1.0 -2.8 Chemotaxis signal transduction protein compare
Pf6N2E2_4005 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_2423 -1.0 -5.4 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_4181 -1.0 -0.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_2909 -1.0 -1.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3170 -1.0 -3.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4918 -1.0 -0.9 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_2930 -1.0 -1.1 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf6N2E2_2284 -1.0 -0.9 Cell division inhibitor-related protein compare
Pf6N2E2_3559 -1.0 -1.1 Putative heat shock protein YegD compare
Pf6N2E2_4143 -1.0 -1.1 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Pf6N2E2_1028 -0.9 -0.6 Transcriptional regulator, LysR family compare
Pf6N2E2_2778 -0.9 -0.6 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_1705 -0.9 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4779 -0.9 -1.2 Transcriptional regulator, AsnC family compare
Pf6N2E2_660 -0.9 -0.6 hypothetical protein compare
Pf6N2E2_537 -0.9 -1.4 Na(+) H(+) antiporter subunit C compare
Pf6N2E2_5920 -0.9 -1.3 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Ying_Others16 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Others16 across organisms