Experiment set24S419 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Others16 rep B; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.2 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.7 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -4.3 -3.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_71 -3.2 -2.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2318 -3.2 -22.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2080 -3.1 -1.4 hypothetical protein compare
Pf6N2E2_3940 -3.1 -5.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3842 -3.0 -2.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3645 -2.9 -10.2 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_2320 -2.8 -13.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5668 -2.8 -5.0 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3667 -2.7 -8.2 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5339 -2.7 -16.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5919 -2.7 -1.8 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_5338 -2.7 -20.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4473 -2.6 -8.3 HlyD family secretion protein compare
Pf6N2E2_3248 -2.6 -6.8 Probable transmembrane protein compare
Pf6N2E2_3661 -2.6 -14.9 hypothetical protein compare
Pf6N2E2_942 -2.5 -1.7 Mll6465 protein compare
Pf6N2E2_3610 -2.5 -1.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3786 -2.5 -11.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_63 -2.5 -1.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5337 -2.4 -15.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5177 -2.4 -1.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_64 -2.4 -1.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4721 -2.4 -2.3 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf6N2E2_3171 -2.4 -1.1 hypothetical protein compare
Pf6N2E2_3785 -2.3 -6.8 Twin-arginine translocation protein TatB compare
Pf6N2E2_3932 -2.3 -2.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_50 -2.3 -5.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_2822 -2.3 -6.9 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_77 -2.2 -1.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_533 -2.2 -2.6 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_3251 -2.2 -7.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2317 -2.2 -5.4 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3252 -2.2 -1.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2139 -2.2 -3.4 Paraquat-inducible protein A compare
Pf6N2E2_2073 -2.2 -1.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_279 -2.1 -7.6 Isocitrate lyase (EC 4.1.3.1) compare
Pf6N2E2_4706 -2.1 -4.7 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_4826 -2.1 -2.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_2753 -2.1 -4.5 HtrA protease/chaperone protein compare
Pf6N2E2_66 -2.0 -1.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3665 -2.0 -1.3 serine/threonine protein kinase compare
Pf6N2E2_3841 -2.0 -2.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4351 -2.0 -13.3 Predicted signal transduction protein compare
Pf6N2E2_445 -2.0 -9.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3240 -1.9 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4471 -1.9 -5.0 ABC-type multidrug transport system, permease component compare
Pf6N2E2_4752 -1.9 -8.2 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_3264 -1.9 -6.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_302 -1.9 -2.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3687 -1.9 -1.2 FIG00959437: hypothetical protein compare
Pf6N2E2_4048 -1.9 -1.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4803 -1.9 -1.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3751 -1.9 -7.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5665 -1.8 -6.0 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_3752 -1.8 -11.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4187 -1.8 -16.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_962 -1.8 -1.2 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_5505 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_4472 -1.7 -8.0 ABC-type multidrug transport system, permease component compare
Pf6N2E2_4720 -1.6 -10.6 Sarcosine oxidase alpha subunit (EC 1.5.3.1) compare
Pf6N2E2_5622 -1.6 -1.1 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_4596 -1.6 -1.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5258 -1.6 -2.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_51 -1.6 -6.5 hypothetical protein compare
Pf6N2E2_5455 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_3839 -1.6 -1.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1749 -1.6 -1.0 Cyn operon transcriptional activator compare
Pf6N2E2_5115 -1.6 -1.1 Type IV fimbrial biogenesis protein PilV compare
Pf6N2E2_3253 -1.5 -1.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5679 -1.5 -3.2 hypothetical protein compare
Pf6N2E2_5666 -1.5 -1.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4717 -1.5 -5.5 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Pf6N2E2_1506 -1.5 -1.0 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_178 -1.5 -0.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3656 -1.5 -8.4 Probable transcription regulator Mig-14 compare
Pf6N2E2_4701 -1.5 -7.0 FIG00953113: hypothetical protein compare
Pf6N2E2_2487 -1.5 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_2769 -1.5 -1.0 Tricarboxylate transport protein TctB compare
Pf6N2E2_6035 -1.5 -0.9 alpha/beta hydrolase fold compare
Pf6N2E2_665 -1.5 -1.4 Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-) compare
Pf6N2E2_3271 -1.5 -5.0 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2473 -1.5 -0.6 Major outer membrane lipoprotein I compare
Pf6N2E2_339 -1.5 -1.0 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_4075 -1.5 -7.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4825 -1.5 -1.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_953 -1.4 -0.9 FIG00958851: hypothetical protein compare
Pf6N2E2_2552 -1.4 -3.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2217 -1.4 -1.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3015 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_4702 -1.4 -7.0 DgcA Dimethylglycine demethylase subunit A compare
Pf6N2E2_2277 -1.4 -2.2 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2324 -1.4 -1.8 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_3663 -1.4 -8.4 Glycosyl transferase compare
Pf6N2E2_3659 -1.4 -6.3 Protein fixF compare
Pf6N2E2_3982 -1.4 -1.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_4704 -1.4 -5.9 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) compare
Pf6N2E2_2474 -1.4 -7.6 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5257 -1.4 -6.6 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2188 -1.4 -1.3 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_4719 -1.4 -5.3 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf6N2E2_3630 -1.3 -4.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4969 -1.3 -0.6 hypothetical protein compare
Pf6N2E2_4710 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_4597 -1.3 -0.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_37 -1.3 -1.7 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_1526 -1.3 -1.2 MgtC family compare
Pf6N2E2_4072 -1.3 -5.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3573 -1.3 -0.8 HupE-UreJ family metal transporter compare
Pf6N2E2_1207 -1.3 -1.5 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_3763 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_4691 -1.3 -1.3 hypothetical protein compare
Pf6N2E2_5703 -1.3 -0.8 outer membrane protein H1 compare
Pf6N2E2_405 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_477 -1.2 -1.6 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_663 -1.2 -1.1 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_1626 -1.2 -4.4 Putative ATP-binding component of a transport system compare
Pf6N2E2_5677 -1.2 -0.8 Carbon storage regulator compare
Pf6N2E2_5088 -1.2 -1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1385 -1.2 -2.4 FIG00956261: hypothetical protein compare
Pf6N2E2_5242 -1.2 -1.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_669 -1.2 -1.1 Nuclease inhibitor compare
Pf6N2E2_74 -1.2 -0.8 DedD protein compare
Pf6N2E2_1412 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_3748 -1.2 -1.4 Cytochrome B561 compare
Pf6N2E2_3192 -1.2 -1.1 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_4070 -1.2 -0.8 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_469 -1.2 -0.7 lipoprotein, putative compare
Pf6N2E2_3816 -1.2 -7.4 Glycogen phosphorylase (EC 2.4.1.1) compare
Pf6N2E2_2714 -1.2 -0.7 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_3201 -1.2 -1.6 Transcriptional regulator, MerR family compare
Pf6N2E2_5175 -1.1 -0.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3820 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_4567 -1.1 -1.1 ThiJ/PfpI family protein compare
Pf6N2E2_5073 -1.1 -6.0 Large-conductance mechanosensitive channel compare
Pf6N2E2_3664 -1.1 -7.0 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5807 -1.1 -1.1 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_5411 -1.1 -1.4 FIG00955494: hypothetical protein compare
Pf6N2E2_4564 -1.1 -3.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4779 -1.1 -1.3 Transcriptional regulator, AsnC family compare
Pf6N2E2_4718 -1.1 -4.6 Sarcosine oxidase beta subunit (EC 1.5.3.1) compare
Pf6N2E2_472 -1.1 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_1959 -1.1 -0.7 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_2064 -1.1 -0.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_4762 -1.1 -0.7 Biotin synthesis protein BioH compare
Pf6N2E2_3206 -1.1 -0.6 hypothetical protein compare
Pf6N2E2_3334 -1.1 -6.4 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_318 -1.1 -0.7 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_1434 -1.1 -1.7 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_4077 -1.1 -0.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1735 -1.1 -1.4 PhnB protein compare
Pf6N2E2_734 -1.1 -0.7 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_2360 -1.1 -1.0 cell invasion protein SipB compare
Pf6N2E2_5825 -1.1 -3.5 FIG00958237: hypothetical protein compare
Pf6N2E2_4279 -1.1 -7.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5676 -1.0 -1.4 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_453 -1.0 -0.6 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_650 -1.0 -1.0 General secretion pathway protein M compare
Pf6N2E2_1746 -1.0 -1.2 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_1671 -1.0 -1.0 Transcriptional regulator, TetR family compare
Pf6N2E2_4797 -1.0 -2.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_1396 -1.0 -1.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_4548 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_425 -1.0 -0.9 FIG00957304: hypothetical protein compare
Pf6N2E2_2788 -1.0 -0.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_2132 -1.0 -1.3 FIG00956937: hypothetical protein compare
Pf6N2E2_2508 -1.0 -3.3 hypothetical protein compare
Pf6N2E2_4074 -1.0 -8.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2752 -1.0 -1.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_965 -1.0 -2.5 PilL protein compare
Pf6N2E2_2440 -1.0 -0.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_2778 -1.0 -0.6 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_5419 -1.0 -0.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_1860 -1.0 -1.1 Ferredoxin, 2Fe-2S compare
Pf6N2E2_4277 -1.0 -6.7 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_1705 -1.0 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5712 -1.0 -1.9 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_3432 -1.0 -1.4 Ais protein, putative compare
Pf6N2E2_660 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_1028 -1.0 -0.6 Transcriptional regulator, LysR family compare
Pf6N2E2_4181 -1.0 -0.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_3938 -1.0 -6.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3869 -1.0 -4.0 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_350 -1.0 -1.0 Gfa-like protein compare
Pf6N2E2_2849 -1.0 -0.6 Chromosome initiation inhibitor compare
Pf6N2E2_3933 -1.0 -1.8 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_3170 -1.0 -3.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_1514 -1.0 -1.2 lipoprotein OprI, putative compare
Pf6N2E2_3984 -1.0 -6.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_1381 -1.0 -1.9 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_6085 -1.0 -0.6 Aha1 domain superfamily compare
Pf6N2E2_5784 -1.0 -1.4 FIG01073969: hypothetical protein compare
Pf6N2E2_5756 -1.0 -0.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3944 -1.0 -1.0 Protein of unknown function DUF81 compare
Pf6N2E2_4467 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_1089 -0.9 -0.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_5576 -0.9 -1.1 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_2218 -0.9 -1.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Ying_Others16 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Others16 across organisms