Experiment set24S418 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Others16 rep A; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.2 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.6 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -4.9 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3661 -3.4 -15.5 hypothetical protein compare
Pf6N2E2_71 -3.3 -3.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2320 -3.3 -13.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2318 -3.1 -23.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3248 -3.1 -8.2 Probable transmembrane protein compare
Pf6N2E2_4706 -3.1 -4.5 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3786 -3.0 -10.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_3842 -2.9 -2.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3667 -2.9 -4.9 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3645 -2.8 -9.4 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_4473 -2.8 -8.5 HlyD family secretion protein compare
Pf6N2E2_5338 -2.7 -21.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3940 -2.7 -6.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5337 -2.6 -17.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2139 -2.6 -2.5 Paraquat-inducible protein A compare
Pf6N2E2_5339 -2.6 -16.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3932 -2.6 -3.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3610 -2.5 -1.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5177 -2.5 -2.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_63 -2.5 -1.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4721 -2.4 -2.3 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf6N2E2_64 -2.4 -1.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3785 -2.3 -7.8 Twin-arginine translocation protein TatB compare
Pf6N2E2_4742 -2.3 -1.5 Glutathione S-transferase family protein compare
Pf6N2E2_4187 -2.3 -19.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2753 -2.3 -4.0 HtrA protease/chaperone protein compare
Pf6N2E2_5668 -2.2 -3.4 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_77 -2.2 -1.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3251 -2.2 -6.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3252 -2.2 -1.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_451 -2.1 -1.4 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3264 -2.1 -11.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4699 -2.1 -2.0 FIG00953563: hypothetical protein compare
Pf6N2E2_50 -2.1 -4.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4826 -2.0 -1.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_66 -2.0 -1.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3665 -2.0 -1.3 serine/threonine protein kinase compare
Pf6N2E2_279 -2.0 -7.5 Isocitrate lyase (EC 4.1.3.1) compare
Pf6N2E2_3240 -1.9 -0.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4803 -1.9 -1.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4752 -1.9 -8.9 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_3751 -1.9 -7.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2317 -1.9 -7.7 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2675 -1.9 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3752 -1.9 -11.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3841 -1.9 -1.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2822 -1.9 -6.3 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2277 -1.9 -2.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_4048 -1.9 -1.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3687 -1.9 -1.2 FIG00959437: hypothetical protein compare
Pf6N2E2_1085 -1.8 -1.2 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_962 -1.8 -1.2 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_5242 -1.8 -2.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4472 -1.8 -9.3 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5257 -1.8 -6.6 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_1759 -1.8 -1.2 uncharacterized domain 1 compare
Pf6N2E2_5665 -1.8 -3.8 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_3984 -1.8 -9.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4720 -1.8 -11.5 Sarcosine oxidase alpha subunit (EC 1.5.3.1) compare
Pf6N2E2_3656 -1.7 -10.7 Probable transcription regulator Mig-14 compare
Pf6N2E2_4351 -1.7 -12.0 Predicted signal transduction protein compare
Pf6N2E2_4701 -1.7 -7.4 FIG00953113: hypothetical protein compare
Pf6N2E2_51 -1.7 -6.4 hypothetical protein compare
Pf6N2E2_4307 -1.7 -1.6 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_4471 -1.7 -4.9 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3663 -1.7 -9.5 Glycosyl transferase compare
Pf6N2E2_6099 -1.7 -0.7 tRNA-Glu-TTC compare
Pf6N2E2_2552 -1.7 -5.1 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_603 -1.7 -1.1 FIG00953934: hypothetical protein compare
Pf6N2E2_4717 -1.7 -6.8 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Pf6N2E2_5258 -1.7 -3.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3120 -1.7 -1.1 Chemotaxis signal transduction protein compare
Pf6N2E2_302 -1.7 -2.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5520 -1.7 -4.8 Sensory box histidine kinase compare
Pf6N2E2_4075 -1.6 -8.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2508 -1.6 -3.8 hypothetical protein compare
Pf6N2E2_5622 -1.6 -1.0 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_4596 -1.6 -1.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5455 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_3630 -1.6 -5.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3839 -1.6 -1.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4702 -1.6 -7.7 DgcA Dimethylglycine demethylase subunit A compare
Pf6N2E2_5115 -1.6 -1.1 Type IV fimbrial biogenesis protein PilV compare
Pf6N2E2_2474 -1.5 -8.1 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4279 -1.5 -9.3 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4467 -1.5 -1.4 hypothetical protein compare
Pf6N2E2_3253 -1.5 -1.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4825 -1.5 -1.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4072 -1.5 -6.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2073 -1.5 -3.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4718 -1.5 -5.6 Sarcosine oxidase beta subunit (EC 1.5.3.1) compare
Pf6N2E2_2487 -1.5 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_5666 -1.5 -2.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_178 -1.5 -0.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2217 -1.5 -1.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3591 -1.5 -1.0 NUDIX hydrolase compare
Pf6N2E2_445 -1.5 -8.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_953 -1.5 -0.9 FIG00958851: hypothetical protein compare
Pf6N2E2_339 -1.5 -0.9 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_4990 -1.4 -0.9 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_4704 -1.4 -5.9 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) compare
Pf6N2E2_5679 -1.4 -2.6 hypothetical protein compare
Pf6N2E2_4719 -1.4 -4.9 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf6N2E2_4397 -1.4 -1.9 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_2309 -1.4 -3.9 hypothetical protein compare
Pf6N2E2_5647 -1.4 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_2476 -1.4 -1.8 Arylesterase precursor (EC 3.1.1.2) compare
Pf6N2E2_1715 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_4597 -1.4 -0.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4969 -1.4 -0.6 hypothetical protein compare
Pf6N2E2_1246 -1.4 -0.9 FIG00961372: hypothetical protein compare
Pf6N2E2_4710 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_650 -1.3 -0.9 General secretion pathway protein M compare
Pf6N2E2_3573 -1.3 -0.8 HupE-UreJ family metal transporter compare
Pf6N2E2_1626 -1.3 -4.0 Putative ATP-binding component of a transport system compare
Pf6N2E2_1396 -1.3 -1.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_3334 -1.3 -7.0 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_3763 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_3558 -1.2 -2.5 DnaJ-class molecular chaperone CbpA compare
Pf6N2E2_3521 -1.2 -5.6 Sensor histidine kinase/response regulator compare
Pf6N2E2_5073 -1.2 -6.0 Large-conductance mechanosensitive channel compare
Pf6N2E2_5452 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_331 -1.2 -1.8 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_4918 -1.2 -1.4 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_5728 -1.2 -1.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3659 -1.2 -6.4 Protein fixF compare
Pf6N2E2_3853 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_5024 -1.2 -0.8 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_295 -1.2 -0.8 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_2582 -1.2 -1.1 Flagellar motor switch protein FliN compare
Pf6N2E2_5262 -1.2 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_74 -1.2 -0.8 DedD protein compare
Pf6N2E2_1412 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_1893 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_719 -1.2 -0.7 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_469 -1.2 -0.7 lipoprotein, putative compare
Pf6N2E2_1749 -1.2 -1.0 Cyn operon transcriptional activator compare
Pf6N2E2_193 -1.1 -0.8 hypothetical protein compare
Pf6N2E2_5784 -1.1 -1.3 FIG01073969: hypothetical protein compare
Pf6N2E2_2714 -1.1 -0.6 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_5175 -1.1 -0.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2188 -1.1 -1.3 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_4564 -1.1 -3.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2681 -1.1 -0.7 3-phosphoglycerate kinase compare
Pf6N2E2_4762 -1.1 -0.7 Biotin synthesis protein BioH compare
Pf6N2E2_2423 -1.1 -6.0 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_4506 -1.1 -0.7 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_1683 -1.1 -1.2 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_2064 -1.1 -0.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_472 -1.1 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_1024 -1.1 -1.0 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_4077 -1.1 -0.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4548 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_734 -1.1 -0.7 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_3938 -1.1 -6.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_318 -1.1 -0.7 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_3816 -1.1 -6.9 Glycogen phosphorylase (EC 2.4.1.1) compare
Pf6N2E2_4083 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_1490 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_2162 -1.1 -1.0 Cytochrome c4 compare
Pf6N2E2_3820 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_3664 -1.0 -4.9 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2440 -1.0 -0.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_453 -1.0 -0.6 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_1825 -1.0 -0.7 FOG: EAL domain protein compare
Pf6N2E2_425 -1.0 -0.9 FIG00957304: hypothetical protein compare
Pf6N2E2_443 -1.0 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_630 -1.0 -0.9 Epimerase KguE compare
Pf6N2E2_5209 -1.0 -1.2 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_848 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_2316 -1.0 -6.6 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_304 -1.0 -1.5 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_4624 -1.0 -0.8 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4074 -1.0 -8.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2688 -1.0 -1.3 YD repeat protein compare
Pf6N2E2_5496 -1.0 -0.7 FIG00953991: hypothetical protein compare
Pf6N2E2_1746 -1.0 -1.1 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_2081 -1.0 -0.6 putative exported protein compare
Pf6N2E2_2988 -1.0 -0.7 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_3170 -1.0 -3.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3039 -1.0 -6.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1502 -1.0 -0.6 Two-component system regulatory protein compare
Pf6N2E2_2788 -1.0 -0.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_1705 -1.0 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4691 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_3595 -1.0 -0.7 Large protein containing transglutaminase-like domain compare
Pf6N2E2_733 -1.0 -2.2 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_1028 -1.0 -0.6 Transcriptional regulator, LysR family compare
Pf6N2E2_2769 -1.0 -1.3 Tricarboxylate transport protein TctB compare
Pf6N2E2_3825 -1.0 -1.1 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_4181 -1.0 -0.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_973 -1.0 -1.3 Single-stranded DNA-binding protein compare
Pf6N2E2_2692 -1.0 -2.5 RNA polymerase sigma factor RpoE compare
Pf6N2E2_2465 -1.0 -2.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_219 -1.0 -1.3 Response regulator BaeR compare
Pf6N2E2_37 -1.0 -1.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2778 -1.0 -0.6 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Ying_Others16 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Others16 across organisms