Experiment set24S417 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Nucleobase14 rep C; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -6.9 -6.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2074 -5.1 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3661 -4.4 -15.4 hypothetical protein compare
Pf6N2E2_3783 -3.6 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_71 -3.5 -3.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3842 -3.2 -3.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3645 -3.0 -12.6 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_63 -2.9 -3.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3630 -2.8 -3.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3610 -2.7 -1.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4590 -2.7 -2.6 Thiazole biosynthesis protein ThiG compare
Pf6N2E2_5223 -2.7 -3.6 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_5803 -2.6 -4.4 Allantoicase (EC 3.5.3.4) compare
Pf6N2E2_3940 -2.6 -7.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4473 -2.6 -10.5 HlyD family secretion protein compare
Pf6N2E2_5177 -2.6 -1.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_2753 -2.6 -3.1 HtrA protease/chaperone protein compare
Pf6N2E2_64 -2.6 -1.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3060 -2.6 -3.0 Outer membrane protein H precursor compare
Pf6N2E2_2318 -2.5 -19.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3727 -2.5 -1.6 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_77 -2.4 -1.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3932 -2.4 -3.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3252 -2.4 -1.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2822 -2.3 -7.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_451 -2.3 -1.5 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4826 -2.3 -1.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3984 -2.2 -11.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3644 -2.2 -6.1 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) compare
Pf6N2E2_66 -2.2 -1.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4048 -2.2 -1.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3240 -2.2 -0.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2139 -2.1 -3.8 Paraquat-inducible protein A compare
Pf6N2E2_3687 -2.1 -1.4 FIG00959437: hypothetical protein compare
Pf6N2E2_4471 -2.1 -6.1 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3659 -2.1 -7.3 Protein fixF compare
Pf6N2E2_3271 -2.1 -6.2 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2675 -2.1 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3752 -2.1 -10.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2320 -2.1 -11.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_302 -2.0 -3.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5505 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_962 -2.0 -1.3 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_3516 -2.0 -1.7 Probable transmembrane protein compare
Pf6N2E2_3658 -2.0 -12.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_1400 -1.9 -4.8 Sensory box histidine kinase/response regulator compare
Pf6N2E2_3751 -1.9 -4.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4825 -1.9 -2.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4596 -1.9 -1.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2423 -1.9 -8.9 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_5910 -1.8 -1.2 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_3839 -1.8 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5455 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_4472 -1.8 -10.1 ABC-type multidrug transport system, permease component compare
Pf6N2E2_163 -1.8 -4.3 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf6N2E2_4059 -1.8 -0.7 DNA-binding protein HU-alpha compare
Pf6N2E2_3088 -1.8 -1.0 hypothetical protein compare
Pf6N2E2_2336 -1.8 -5.6 Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) compare
Pf6N2E2_2072 -1.8 -1.7 hypothetical protein compare
Pf6N2E2_5257 -1.8 -7.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2474 -1.8 -10.0 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2235 -1.7 -7.6 Xanthine permease compare
Pf6N2E2_5392 -1.7 -4.9 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_3253 -1.7 -1.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2508 -1.7 -2.5 hypothetical protein compare
Pf6N2E2_5962 -1.7 -4.9 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_4597 -1.7 -1.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5807 -1.7 -1.1 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_2253 -1.7 -5.1 hypothetical protein compare
Pf6N2E2_2507 -1.7 -4.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2487 -1.7 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_2073 -1.7 -3.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5258 -1.7 -3.8 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2473 -1.7 -0.6 Major outer membrane lipoprotein I compare
Pf6N2E2_5394 -1.7 -4.3 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_2217 -1.6 -1.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4710 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_953 -1.6 -1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_5802 -1.6 -6.5 Ureidoglycolate hydrolase (EC 3.5.3.19) compare
Pf6N2E2_5761 -1.6 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_4424 -1.6 -2.1 Regulator of nucleoside diphosphate kinase compare
Pf6N2E2_1402 -1.6 -4.6 hypothetical protein compare
Pf6N2E2_2117 -1.6 -9.8 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_5838 -1.6 -1.5 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_3763 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_3573 -1.5 -1.0 HupE-UreJ family metal transporter compare
Pf6N2E2_374 -1.5 -3.1 FIG00953249: hypothetical protein compare
Pf6N2E2_4969 -1.5 -0.6 hypothetical protein compare
Pf6N2E2_1246 -1.5 -1.0 FIG00961372: hypothetical protein compare
Pf6N2E2_638 -1.5 -1.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2422 -1.5 -6.1 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_5023 -1.5 -1.0 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_3251 -1.5 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2337 -1.5 -7.9 Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) compare
Pf6N2E2_3841 -1.5 -3.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2338 -1.5 -5.9 XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) compare
Pf6N2E2_1381 -1.5 -2.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_4564 -1.4 -4.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2506 -1.4 -6.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2552 -1.4 -3.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5647 -1.4 -3.0 Transcriptional regulator, TetR family compare
Pf6N2E2_5262 -1.4 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_4762 -1.4 -0.9 Biotin synthesis protein BioH compare
Pf6N2E2_74 -1.4 -0.9 DedD protein compare
Pf6N2E2_5024 -1.4 -0.9 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_4548 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_1412 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_2258 -1.3 -1.3 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2510 -1.3 -2.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5805 -1.3 -2.0 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_4810 -1.3 -8.1 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_469 -1.3 -0.8 lipoprotein, putative compare
Pf6N2E2_3942 -1.3 -5.6 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5175 -1.3 -0.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4779 -1.3 -1.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_3455 -1.3 -0.9 Integral membrane protein YfiB compare
Pf6N2E2_3778 -1.3 -1.9 FIG00954300: hypothetical protein compare
Pf6N2E2_1749 -1.3 -1.1 Cyn operon transcriptional activator compare
Pf6N2E2_431 -1.3 -4.5 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf6N2E2_3017 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_1490 -1.3 -1.1 hypothetical protein compare
Pf6N2E2_50 -1.3 -7.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3663 -1.3 -6.7 Glycosyl transferase compare
Pf6N2E2_4258 -1.3 -0.9 FIG00953800: hypothetical protein compare
Pf6N2E2_1959 -1.3 -0.8 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_1747 -1.3 -0.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_164 -1.3 -4.6 Ribose operon repressor compare
Pf6N2E2_5806 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_472 -1.2 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_4181 -1.2 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_734 -1.2 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_162 -1.2 -4.9 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) compare
Pf6N2E2_432 -1.2 -6.1 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf6N2E2_4567 -1.2 -1.4 ThiJ/PfpI family protein compare
Pf6N2E2_1709 -1.2 -1.3 multidrug resistance transporter, Bcr/CflA family compare
Pf6N2E2_5419 -1.2 -0.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_4732 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_5950 -1.2 -2.2 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2728 -1.2 -1.6 SAM-dependent methyltransferases compare
Pf6N2E2_1671 -1.2 -1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_1526 -1.2 -1.5 MgtC family compare
Pf6N2E2_443 -1.2 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_453 -1.2 -0.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_3248 -1.2 -4.0 Probable transmembrane protein compare
Pf6N2E2_2778 -1.2 -0.8 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_4143 -1.2 -1.5 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Pf6N2E2_6062 -1.2 -2.0 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_795 -1.1 -1.5 ABC transporter ATP-binding protein uup compare
Pf6N2E2_5703 -1.1 -1.1 outer membrane protein H1 compare
Pf6N2E2_1028 -1.1 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_2080 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2849 -1.1 -0.7 Chromosome initiation inhibitor compare
Pf6N2E2_5073 -1.1 -7.1 Large-conductance mechanosensitive channel compare
Pf6N2E2_1279 -1.1 -1.2 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_6085 -1.1 -0.7 Aha1 domain superfamily compare
Pf6N2E2_5013 -1.1 -1.6 Putative membrane protein compare
Pf6N2E2_1325 -1.1 -1.5 FIG00954773: hypothetical protein compare
Pf6N2E2_1705 -1.1 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_1875 -1.1 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_1089 -1.1 -0.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_5328 -1.1 -1.4 FIG00958649: hypothetical protein compare
Pf6N2E2_5316 -1.1 -0.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_75 -1.1 -3.2 Colicin V production protein compare
Pf6N2E2_671 -1.1 -1.2 2-methylaconitate racemase compare
Pf6N2E2_2360 -1.1 -1.2 cell invasion protein SipB compare
Pf6N2E2_2795 -1.1 -0.7 putative exported protein compare
Pf6N2E2_5097 -1.1 -0.7 FIG00953595: hypothetical protein compare
Pf6N2E2_4556 -1.1 -1.0 FIG00953078: hypothetical protein compare
Pf6N2E2_4300 -1.1 -1.7 Uncharacterized protein similar to VCA0109 compare
Pf6N2E2_4752 -1.1 -7.4 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_2636 -1.1 -1.0 FIG027190: Putative transmembrane protein compare
Pf6N2E2_4307 -1.1 -1.4 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_1567 -1.1 -1.5 FIG00964846: hypothetical protein compare
Pf6N2E2_3003 -1.1 -0.9 Bacteriophage protein GP46 compare
Pf6N2E2_165 -1.1 -0.7 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_3912 -1.1 -0.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_552 -1.1 -0.6 Uncharacterized protein ImpF compare
Pf6N2E2_3284 -1.1 -1.0 Septum formation protein Maf compare
Pf6N2E2_605 -1.1 -1.3 FIG002465: BNR repeat protein compare
Pf6N2E2_3748 -1.0 -1.4 Cytochrome B561 compare
Pf6N2E2_3264 -1.0 -2.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3221 -1.0 -0.7 FIG00352444: hypothetical protein compare
Pf6N2E2_5920 -1.0 -1.5 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf6N2E2_5780 -1.0 -2.0 Periplasmic protease compare
Pf6N2E2_5517 -1.0 -1.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_3120 -1.0 -1.2 Chemotaxis signal transduction protein compare
Pf6N2E2_5231 -1.0 -2.0 COG3380: Amine oxidase, flavin-containing compare
Pf6N2E2_2701 -1.0 -2.3 FIG00954689: hypothetical protein compare
Pf6N2E2_5819 -1.0 -5.0 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Pf6N2E2_3825 -1.0 -1.3 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3170 -1.0 -3.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_1870 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_237 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_5111 -1.0 -0.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_5720 -1.0 -0.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4047 -1.0 -0.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_1981 -1.0 -0.7 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5599 -1.0 -0.6 Electron transport complex protein RnfA compare
Pf6N2E2_3720 -1.0 -0.6 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1825 -1.0 -0.9 FOG: EAL domain protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Ying_Nucleobase14 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Nucleobase14 across organisms