Experiment set24S417 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Nucleobase14 rep C; time point 2

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_5705 +2.1 8.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4451 +2.1 15.1 FIG139438: lipoprotein B compare
Pf6N2E2_2447 +2.1 7.4 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4153 +2.0 11.3 Sensory box histidine kinase compare
Pf6N2E2_2312 +1.7 4.1 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_1392 +1.6 3.2 sensor histidine kinase compare
Pf6N2E2_5155 +1.6 4.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4889 +1.6 12.0 Putative transport protein compare
Pf6N2E2_5520 +1.5 9.6 Sensory box histidine kinase compare
Pf6N2E2_2527 +1.5 9.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2755 +1.5 2.3 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1393 +1.5 4.9 hypothetical protein compare
Pf6N2E2_2754 +1.4 2.8 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_817 +1.4 8.6 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_4159 +1.4 10.1 Cytochrome c4 compare
Pf6N2E2_5425 +1.3 1.8 hypothetical protein compare
Pf6N2E2_4640 +1.3 0.9 hypothetical protein compare
Pf6N2E2_1389 +1.3 9.9 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_2166 +1.3 7.4 protein of unknown function DUF6, transmembrane compare
Pf6N2E2_1502 +1.3 0.8 Two-component system regulatory protein compare
Pf6N2E2_5840 +1.3 3.3 hypothetical protein compare
Pf6N2E2_2469 +1.2 4.9 hypothetical protein compare
Pf6N2E2_693 +1.2 1.4 hypothetical protein compare
Pf6N2E2_4773 +1.2 1.1 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_3607 +1.1 7.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2367 +1.1 0.7 hypothetical protein compare
Pf6N2E2_3072 +1.1 6.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_6095 +1.1 1.3 tRNA-Asn-GTT compare
Pf6N2E2_3037 +1.0 6.5 RNA polymerase sigma factor RpoS compare
Pf6N2E2_234 +1.0 1.3 FIG00454312: hypothetical protein compare
Pf6N2E2_2605 +1.0 10.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3571 +1.0 3.4 Urease accessory protein UreF compare
Pf6N2E2_5554 +1.0 5.2 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_1213 +1.0 1.6 hypothetical protein compare
Pf6N2E2_2018 +1.0 0.9 hypothetical protein compare
Pf6N2E2_2707 +1.0 2.5 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_114 +1.0 1.6 Polysaccharide biosynthesis protein compare
Pf6N2E2_5906 +1.0 1.4 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_2594 +1.0 5.5 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_5527 +1.0 3.1 Cold shock protein CspC compare
Pf6N2E2_3261 +1.0 9.0 hypothetical protein compare
Pf6N2E2_3713 +1.0 1.4 Acyl carrier protein compare
Pf6N2E2_1394 +1.0 5.4 FIG00953323: hypothetical protein compare
Pf6N2E2_2167 +1.0 4.5 hypothetical protein compare
Pf6N2E2_4797 +0.9 3.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2606 +0.9 7.3 hypothetical protein compare
Pf6N2E2_3303 +0.9 2.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3134 +0.9 0.8 hypothetical protein compare
Pf6N2E2_3872 +0.9 0.9 hypothetical protein compare
Pf6N2E2_2590 +0.9 6.0 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_2625 +0.9 2.5 Flagellar P-ring protein FlgI compare
Pf6N2E2_2088 +0.9 1.0 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_3885 +0.9 1.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_4351 +0.9 6.5 Predicted signal transduction protein compare
Pf6N2E2_2583 +0.9 4.4 Flagellar motor switch protein FliM compare
Pf6N2E2_2597 +0.9 5.6 Flagellar regulatory protein FleQ compare
Pf6N2E2_4263 +0.9 2.0 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_2927 +0.8 1.3 Putative signal peptide protein compare
Pf6N2E2_2081 +0.8 0.7 putative exported protein compare
Pf6N2E2_1303 +0.8 1.7 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_3588 +0.8 1.3 hypothetical protein compare
Pf6N2E2_1 +0.8 1.9 Trans-aconitate 2-methyltransferase (EC 2.1.1.144) compare
Pf6N2E2_2589 +0.8 2.9 Flagellar protein FliJ compare
Pf6N2E2_5560 +0.8 2.8 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_2981 +0.8 1.3 FIG00956655: hypothetical protein compare
Pf6N2E2_1935 +0.8 1.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5676 +0.8 2.2 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3655 +0.8 7.6 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4417 +0.8 5.2 Protein of unknown function DUF484 compare
Pf6N2E2_5677 +0.8 0.7 Carbon storage regulator compare
Pf6N2E2_446 +0.8 4.3 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_5468 +0.8 1.7 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_2758 +0.8 5.8 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_1382 +0.8 5.4 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_2865 +0.8 5.9 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf6N2E2_3899 +0.8 4.5 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2576 +0.8 5.1 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_5365 +0.8 2.5 Heavy metal sensor histidine kinase compare
Pf6N2E2_3441 +0.7 1.9 Gluconate transporter family protein compare
Pf6N2E2_280 +0.7 1.4 hypothetical protein compare
Pf6N2E2_1398 +0.7 2.8 Rhodanese-related sulfurtransferase compare
Pf6N2E2_2831 +0.7 2.4 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) compare
Pf6N2E2_2593 +0.7 3.4 Flagellar M-ring protein FliF compare
Pf6N2E2_2285 +0.7 1.0 FIG00954079: hypothetical protein compare
Pf6N2E2_4459 +0.7 0.5 Transcriptional regulator, GntR family compare
Pf6N2E2_3277 +0.7 0.7 FagA protein compare
Pf6N2E2_3656 +0.7 6.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_5646 +0.7 1.4 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_1718 +0.7 2.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_2899 +0.7 2.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_2152 +0.7 0.6 hypothetical protein compare
Pf6N2E2_5689 +0.7 2.1 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_2627 +0.7 5.2 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_1625 +0.7 1.0 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2279 +0.7 1.9 FIG00954981: hypothetical protein compare
Pf6N2E2_3938 +0.7 4.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3466 +0.7 1.0 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_4684 +0.7 1.4 hypothetical protein compare
Pf6N2E2_1712 +0.7 1.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_1814 +0.7 1.2 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_2624 +0.7 3.7 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_5691 +0.7 3.9 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_2736 +0.7 2.3 hypothetical protein compare
Pf6N2E2_1395 +0.7 3.4 Uncharacterized conserved protein compare
Pf6N2E2_1067 +0.7 3.8 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf6N2E2_5830 +0.7 1.3 FIG00960829: hypothetical protein compare
Pf6N2E2_3624 +0.7 2.5 Flagellar motor rotation protein MotB compare
Pf6N2E2_2007 +0.7 1.7 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_2165 +0.7 5.1 Uncharacterized conserved protein compare
Pf6N2E2_5877 +0.7 1.1 Phosphohistidine phosphatase SixA compare
Pf6N2E2_5236 +0.7 1.6 hypothetical protein compare
Pf6N2E2_5158 +0.7 1.5 FIG00954153: hypothetical protein compare
Pf6N2E2_2577 +0.6 4.2 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_5153 +0.6 4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_3635 +0.6 1.0 FIG00953138: hypothetical protein compare
Pf6N2E2_69 +0.6 3.7 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_6022 +0.6 0.7 StbE replicon stabilization toxin compare
Pf6N2E2_4618 +0.6 3.1 Chemotaxis signal transduction protein compare
Pf6N2E2_4696 +0.6 1.2 FIG00953108: hypothetical protein compare
Pf6N2E2_6006 +0.6 1.5 L-rhamnose operon transcriptional activator RhaR compare
Pf6N2E2_2602 +0.6 3.1 Flagellin protein FlaA compare
Pf6N2E2_2278 +0.6 5.1 Transcription-repair coupling factor compare
Pf6N2E2_3981 +0.6 5.5 T1SS secreted agglutinin RTX compare
Pf6N2E2_1723 +0.6 1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_3560 +0.6 2.7 membrane protein, putative compare
Pf6N2E2_4276 +0.6 2.6 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4607 +0.6 2.5 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_3625 +0.6 4.0 Flagellar motor rotation protein MotA compare
Pf6N2E2_2712 +0.6 3.4 Permeases of the major facilitator superfamily compare
Pf6N2E2_1783 +0.6 1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3702 +0.6 0.8 FIG00953907: hypothetical protein compare
Pf6N2E2_865 +0.6 2.3 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3190 +0.6 3.3 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_3106 +0.6 1.4 hypothetical protein compare
Pf6N2E2_4338 +0.6 3.1 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_1839 +0.6 1.1 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_2868 +0.6 1.5 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_3079 +0.6 2.7 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA compare
Pf6N2E2_5695 +0.6 3.5 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_433 +0.6 2.1 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Pf6N2E2_2468 +0.6 2.8 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Pf6N2E2_2428 +0.6 4.0 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_6023 +0.6 1.0 Putative cytoplasmic protein compare
Pf6N2E2_5697 +0.6 4.5 Flagellar hook protein FlgE compare
Pf6N2E2_4187 +0.6 5.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2384 +0.6 1.5 CmpX compare
Pf6N2E2_2626 +0.6 3.1 Flagellar L-ring protein FlgH compare
Pf6N2E2_2592 +0.6 2.4 Flagellar motor switch protein FliG compare
Pf6N2E2_2623 +0.6 4.3 Flagellar hook-associated protein FlgK compare
Pf6N2E2_2599 +0.6 2.7 Flagellar biosynthesis protein FliS compare
Pf6N2E2_5748 +0.6 0.5 Transcriptional activator protein LuxR compare
Pf6N2E2_698 +0.6 1.1 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_2155 +0.6 1.6 hypothetical protein compare
Pf6N2E2_4357 +0.6 4.3 Nucleoside-diphosphate-sugar epimerases compare
Pf6N2E2_5057 +0.5 1.7 hypothetical protein compare
Pf6N2E2_4455 +0.5 3.6 Glutamate transport ATP-binding protein compare
Pf6N2E2_1434 +0.5 1.3 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_4772 +0.5 3.1 Coenzyme PQQ synthesis protein E compare
Pf6N2E2_5943 +0.5 0.8 hypothetical protein compare
Pf6N2E2_493 +0.5 1.1 YD repeat protein compare
Pf6N2E2_1037 +0.5 1.0 hypothetical protein compare
Pf6N2E2_2311 +0.5 3.8 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2858 +0.5 1.1 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_5663 +0.5 2.0 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_2699 +0.5 3.2 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_4913 +0.5 2.5 Predicted zinc-binding protein compare
Pf6N2E2_399 +0.5 1.4 Iron siderophore sensor protein compare
Pf6N2E2_4566 +0.5 1.3 LSU m5C1962 methyltransferase RlmI compare
Pf6N2E2_2313 +0.5 2.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2043 +0.5 3.5 Twitching motility protein PilT compare
Pf6N2E2_4364 +0.5 1.6 Protein YicC compare
Pf6N2E2_2062 +0.5 0.4 FIG00955561: hypothetical protein compare
Pf6N2E2_1514 +0.5 1.1 lipoprotein OprI, putative compare
Pf6N2E2_1685 +0.5 1.4 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Pf6N2E2_3157 +0.5 2.2 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf6N2E2_3108 +0.5 0.6 FIG00953405: hypothetical protein compare
Pf6N2E2_3962 +0.5 4.6 Fibronectin type III domain protein compare
Pf6N2E2_629 +0.5 1.5 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_2573 +0.5 3.0 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_1424 +0.5 0.7 transcriptional regulator, TetR family compare
Pf6N2E2_3961 +0.5 3.4 Outer membrane protein assembly factor YaeT precursor compare
Pf6N2E2_5084 +0.5 3.3 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_2900 +0.5 1.1 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_2524 +0.5 3.1 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase compare
Pf6N2E2_55 +0.5 0.6 Probable hydrolase compare
Pf6N2E2_660 +0.5 0.5 hypothetical protein compare
Pf6N2E2_54 +0.5 1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_3708 +0.5 3.0 predicted biotin regulatory protein BioR (GntR family) compare
Pf6N2E2_2600 +0.5 3.7 Flagellar hook-associated protein FliD compare
Pf6N2E2_3958 +0.5 1.1 Putative stomatin/prohibitin-family membrane protease subunit aq_911 compare
Pf6N2E2_2563 +0.5 3.7 FIG00953562: hypothetical protein compare
Pf6N2E2_785 +0.5 1.8 P pilus assembly protein, chaperone PapD compare
Pf6N2E2_4063 +0.5 2.0 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_746 +0.5 1.2 FIG00958097: hypothetical protein compare
Pf6N2E2_4993 +0.5 0.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2534 +0.5 0.6 Cell division protein BolA compare
Pf6N2E2_5237 +0.5 0.7 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_1249 +0.5 0.6 Transcriptional regulator, AraC family compare
Pf6N2E2_4776 +0.5 3.5 Coenzyme PQQ synthesis protein F compare
Pf6N2E2_1856 +0.5 2.2 phytoene dehydrogenase family protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Ying_Nucleobase14 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Nucleobase14 across organisms