Experiment set24S416 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Nucleobase14 rep B; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.5 -5.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.4 -8.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -5.1 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3661 -4.1 -13.6 hypothetical protein compare
Pf6N2E2_71 -3.5 -4.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3842 -3.2 -2.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3932 -3.2 -3.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3940 -3.0 -7.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2822 -2.9 -5.9 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3645 -2.9 -11.7 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_3630 -2.8 -4.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3610 -2.6 -1.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5803 -2.6 -4.9 Allantoicase (EC 3.5.3.4) compare
Pf6N2E2_63 -2.6 -1.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5177 -2.6 -1.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5223 -2.6 -3.5 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_64 -2.6 -1.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2753 -2.6 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_2318 -2.5 -20.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4473 -2.5 -9.6 HlyD family secretion protein compare
Pf6N2E2_4826 -2.4 -2.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_77 -2.4 -1.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4590 -2.4 -3.6 Thiazole biosynthesis protein ThiG compare
Pf6N2E2_3252 -2.4 -1.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2139 -2.3 -3.5 Paraquat-inducible protein A compare
Pf6N2E2_3516 -2.3 -1.4 Probable transmembrane protein compare
Pf6N2E2_3060 -2.3 -3.1 Outer membrane protein H precursor compare
Pf6N2E2_5761 -2.3 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_451 -2.3 -1.5 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_2674 -2.2 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_4048 -2.2 -3.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2320 -2.2 -11.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_66 -2.2 -2.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3240 -2.1 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3687 -2.1 -1.4 FIG00959437: hypothetical protein compare
Pf6N2E2_4471 -2.1 -5.4 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3752 -2.1 -10.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2675 -2.1 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3644 -2.0 -7.9 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) compare
Pf6N2E2_3659 -2.0 -7.6 Protein fixF compare
Pf6N2E2_3271 -2.0 -5.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2253 -2.0 -5.1 hypothetical protein compare
Pf6N2E2_962 -1.9 -1.3 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_5647 -1.9 -2.9 Transcriptional regulator, TetR family compare
Pf6N2E2_5505 -1.9 -1.3 hypothetical protein compare
Pf6N2E2_1400 -1.9 -4.2 Sensory box histidine kinase/response regulator compare
Pf6N2E2_2508 -1.9 -2.4 hypothetical protein compare
Pf6N2E2_6099 -1.9 -0.7 tRNA-Glu-TTC compare
Pf6N2E2_2423 -1.9 -8.6 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_4472 -1.9 -10.3 ABC-type multidrug transport system, permease component compare
Pf6N2E2_163 -1.9 -4.4 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf6N2E2_2561 -1.8 -1.2 FIG00955434: hypothetical protein compare
Pf6N2E2_302 -1.8 -3.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3253 -1.8 -1.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3751 -1.8 -4.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5622 -1.8 -1.2 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_4596 -1.8 -1.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_1402 -1.8 -4.2 hypothetical protein compare
Pf6N2E2_3839 -1.8 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_482 -1.8 -1.1 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_5257 -1.8 -7.3 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_5455 -1.8 -1.1 hypothetical protein compare
Pf6N2E2_2072 -1.7 -1.7 hypothetical protein compare
Pf6N2E2_4059 -1.7 -0.7 DNA-binding protein HU-alpha compare
Pf6N2E2_5392 -1.7 -4.4 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_2688 -1.7 -1.2 YD repeat protein compare
Pf6N2E2_5838 -1.7 -2.3 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_3702 -1.7 -1.1 FIG00953907: hypothetical protein compare
Pf6N2E2_4825 -1.7 -1.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5807 -1.7 -1.1 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_3658 -1.7 -11.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_848 -1.7 -1.5 hypothetical protein compare
Pf6N2E2_178 -1.7 -0.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2487 -1.6 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_1834 -1.6 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2473 -1.6 -0.6 Major outer membrane lipoprotein I compare
Pf6N2E2_919 -1.6 -1.0 FIG00954373: hypothetical protein compare
Pf6N2E2_2474 -1.6 -8.8 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5394 -1.6 -4.1 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_3841 -1.6 -2.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5258 -1.6 -3.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_953 -1.6 -1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_4307 -1.6 -1.8 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_4597 -1.6 -1.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4710 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_2073 -1.5 -3.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1886 -1.5 -1.7 hypothetical protein compare
Pf6N2E2_4700 -1.5 -1.0 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_2337 -1.5 -8.0 Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) compare
Pf6N2E2_3763 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_2507 -1.5 -3.7 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3984 -1.5 -9.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4969 -1.5 -0.6 hypothetical protein compare
Pf6N2E2_5023 -1.5 -1.0 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_1246 -1.5 -1.0 FIG00961372: hypothetical protein compare
Pf6N2E2_3573 -1.5 -1.0 HupE-UreJ family metal transporter compare
Pf6N2E2_1401 -1.5 -3.4 FIG00955631: hypothetical protein compare
Pf6N2E2_37 -1.5 -1.7 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_1381 -1.5 -2.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_432 -1.4 -8.1 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf6N2E2_1526 -1.4 -1.3 MgtC family compare
Pf6N2E2_3663 -1.4 -8.0 Glycosyl transferase compare
Pf6N2E2_2117 -1.4 -8.5 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_5802 -1.4 -5.8 Ureidoglycolate hydrolase (EC 3.5.3.19) compare
Pf6N2E2_4150 -1.4 -0.9 probable exported protein YPO0432 compare
Pf6N2E2_3942 -1.4 -6.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2338 -1.4 -5.9 XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) compare
Pf6N2E2_2258 -1.4 -1.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5805 -1.4 -2.3 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_5262 -1.4 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_2336 -1.4 -5.1 Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) compare
Pf6N2E2_5024 -1.4 -0.9 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_2582 -1.4 -1.3 Flagellar motor switch protein FliN compare
Pf6N2E2_2422 -1.4 -5.9 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_74 -1.4 -0.9 DedD protein compare
Pf6N2E2_2235 -1.3 -5.8 Xanthine permease compare
Pf6N2E2_3248 -1.3 -6.5 Probable transmembrane protein compare
Pf6N2E2_2552 -1.3 -3.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3179 -1.3 -0.9 FIG021952: putative membrane protein compare
Pf6N2E2_295 -1.3 -0.9 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_500 -1.3 -1.5 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_5175 -1.3 -0.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4762 -1.3 -0.9 Biotin synthesis protein BioH compare
Pf6N2E2_4564 -1.3 -4.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_1412 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_2324 -1.3 -1.9 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_5453 -1.3 -1.7 hypothetical protein compare
Pf6N2E2_5073 -1.3 -6.8 Large-conductance mechanosensitive channel compare
Pf6N2E2_162 -1.3 -5.4 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) compare
Pf6N2E2_469 -1.3 -0.8 lipoprotein, putative compare
Pf6N2E2_4077 -1.3 -0.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2655 -1.3 -1.5 Agmatinase (EC 3.5.3.11) compare
Pf6N2E2_1749 -1.3 -1.1 Cyn operon transcriptional activator compare
Pf6N2E2_3455 -1.3 -0.8 Integral membrane protein YfiB compare
Pf6N2E2_4424 -1.3 -1.8 Regulator of nucleoside diphosphate kinase compare
Pf6N2E2_5771 -1.3 -6.1 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5728 -1.2 -1.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3679 -1.2 -1.6 Protein involved in catabolism of external DNA compare
Pf6N2E2_164 -1.2 -4.2 Ribose operon repressor compare
Pf6N2E2_2350 -1.2 -0.8 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_466 -1.2 -0.8 Nicotinamidase (EC 3.5.1.19) compare
Pf6N2E2_2506 -1.2 -6.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_472 -1.2 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_4349 -1.2 -1.4 Superfamily II DNA and RNA helicases compare
Pf6N2E2_734 -1.2 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1024 -1.2 -1.1 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_318 -1.2 -0.8 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_3251 -1.2 -6.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_62 -1.2 -1.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3499 -1.2 -1.5 Permeases of the major facilitator superfamily compare
Pf6N2E2_5518 -1.2 -2.7 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Pf6N2E2_5666 -1.2 -3.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_650 -1.2 -1.1 General secretion pathway protein M compare
Pf6N2E2_2934 -1.2 -1.3 lipoprotein, putative compare
Pf6N2E2_4181 -1.2 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_5962 -1.2 -3.9 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_2465 -1.2 -2.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4075 -1.2 -6.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_443 -1.2 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2778 -1.2 -0.8 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_453 -1.2 -0.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_4070 -1.2 -1.1 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_5921 -1.2 -1.1 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf6N2E2_3234 -1.2 -1.1 mandelate racemase/muconate lactonizing enzyme family protein compare
Pf6N2E2_4732 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_942 -1.1 -1.0 Mll6465 protein compare
Pf6N2E2_888 -1.1 -0.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4810 -1.1 -5.8 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_5261 -1.1 -1.2 FIG00956983: hypothetical protein compare
Pf6N2E2_660 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_94 -1.1 -1.3 Cyn operon transcriptional activator compare
Pf6N2E2_1028 -1.1 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_2509 -1.1 -2.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4541 -1.1 -0.8 hypothetical protein compare
Pf6N2E2_1705 -1.1 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4300 -1.1 -1.6 Uncharacterized protein similar to VCA0109 compare
Pf6N2E2_2849 -1.1 -0.7 Chromosome initiation inhibitor compare
Pf6N2E2_292 -1.1 -6.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_5839 -1.1 -7.9 Glyoxylate carboligase (EC 4.1.1.47) compare
Pf6N2E2_1875 -1.1 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_3198 -1.1 -0.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5756 -1.1 -0.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2795 -1.1 -0.7 putative exported protein compare
Pf6N2E2_2575 -1.1 -2.8 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_3588 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_5219 -1.1 -2.9 FIG140336: TPR domain protein compare
Pf6N2E2_6085 -1.1 -0.7 Aha1 domain superfamily compare
Pf6N2E2_5316 -1.1 -0.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4680 -1.1 -1.0 HTH-type transcriptional regulator BetI compare
Pf6N2E2_2510 -1.1 -2.6 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_1089 -1.1 -0.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3170 -1.1 -3.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4306 -1.1 -1.9 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_2217 -1.1 -1.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2218 -1.1 -1.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1631 -1.1 -1.5 SyrP-like protein compare
Pf6N2E2_552 -1.1 -0.6 Uncharacterized protein ImpF compare
Pf6N2E2_4818 -1.1 -0.7 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_165 -1.1 -0.7 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_1039 -1.0 -1.2 Gluconolactonase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Ying_Nucleobase14 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Nucleobase14 across organisms