Experiment set24S415 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Nucleobase14 rep A; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.4 -5.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.4 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -5.0 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3661 -3.7 -15.5 hypothetical protein compare
Pf6N2E2_71 -3.4 -4.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3932 -3.1 -3.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3842 -3.1 -2.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3060 -3.1 -1.5 Outer membrane protein H precursor compare
Pf6N2E2_3940 -3.0 -8.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3645 -2.9 -9.3 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_2822 -2.9 -5.9 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_63 -2.7 -2.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5803 -2.6 -2.6 Allantoicase (EC 3.5.3.4) compare
Pf6N2E2_4473 -2.6 -9.2 HlyD family secretion protein compare
Pf6N2E2_2440 -2.6 -1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_5177 -2.6 -1.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_2318 -2.6 -21.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3630 -2.5 -2.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_64 -2.5 -1.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4590 -2.5 -1.7 Thiazole biosynthesis protein ThiG compare
Pf6N2E2_5223 -2.5 -4.1 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_2753 -2.4 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_4826 -2.4 -2.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_77 -2.4 -1.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3252 -2.3 -1.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2320 -2.3 -10.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3610 -2.3 -2.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3644 -2.2 -6.0 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) compare
Pf6N2E2_2674 -2.2 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_2253 -2.2 -5.0 hypothetical protein compare
Pf6N2E2_66 -2.1 -1.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4048 -2.1 -1.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3240 -2.1 -0.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3271 -2.1 -6.0 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2675 -2.0 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3687 -2.0 -1.3 FIG00959437: hypothetical protein compare
Pf6N2E2_3752 -2.0 -10.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2423 -1.9 -8.4 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_302 -1.9 -3.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_1402 -1.9 -6.7 hypothetical protein compare
Pf6N2E2_4471 -1.9 -6.4 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5257 -1.9 -7.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3751 -1.9 -4.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4624 -1.8 -1.1 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4596 -1.8 -1.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3659 -1.8 -7.1 Protein fixF compare
Pf6N2E2_2561 -1.8 -1.1 FIG00955434: hypothetical protein compare
Pf6N2E2_2073 -1.8 -3.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2139 -1.8 -3.8 Paraquat-inducible protein A compare
Pf6N2E2_5258 -1.8 -3.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2508 -1.7 -2.3 hypothetical protein compare
Pf6N2E2_4825 -1.7 -1.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3839 -1.7 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5455 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_163 -1.7 -4.3 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf6N2E2_5647 -1.7 -3.1 Transcriptional regulator, TetR family compare
Pf6N2E2_2080 -1.7 -1.0 hypothetical protein compare
Pf6N2E2_4472 -1.7 -9.2 ABC-type multidrug transport system, permease component compare
Pf6N2E2_1749 -1.7 -1.1 Cyn operon transcriptional activator compare
Pf6N2E2_3253 -1.6 -1.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5838 -1.6 -2.2 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_2235 -1.6 -6.7 Xanthine permease compare
Pf6N2E2_5802 -1.6 -5.9 Ureidoglycolate hydrolase (EC 3.5.3.19) compare
Pf6N2E2_1804 -1.6 -1.5 Immune-responsive protein 1 compare
Pf6N2E2_5807 -1.6 -1.1 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_3702 -1.6 -1.1 FIG00953907: hypothetical protein compare
Pf6N2E2_2507 -1.6 -4.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_178 -1.6 -0.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2487 -1.6 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_1400 -1.6 -3.9 Sensory box histidine kinase/response regulator compare
Pf6N2E2_1709 -1.6 -1.5 multidrug resistance transporter, Bcr/CflA family compare
Pf6N2E2_2970 -1.6 -1.1 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_2473 -1.6 -0.6 Major outer membrane lipoprotein I compare
Pf6N2E2_5392 -1.6 -4.4 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_3984 -1.6 -10.0 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3658 -1.6 -10.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_953 -1.5 -1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_4710 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_2117 -1.5 -9.0 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_4597 -1.5 -1.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3248 -1.5 -6.7 Probable transmembrane protein compare
Pf6N2E2_2188 -1.5 -1.4 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_1916 -1.5 -1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_4969 -1.5 -0.6 hypothetical protein compare
Pf6N2E2_2336 -1.5 -5.0 Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) compare
Pf6N2E2_425 -1.5 -1.0 FIG00957304: hypothetical protein compare
Pf6N2E2_638 -1.5 -1.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2636 -1.5 -1.0 FIG027190: Putative transmembrane protein compare
Pf6N2E2_2337 -1.5 -7.6 Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) compare
Pf6N2E2_3763 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_5962 -1.4 -4.3 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5023 -1.4 -1.0 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_1246 -1.4 -0.9 FIG00961372: hypothetical protein compare
Pf6N2E2_3573 -1.4 -0.9 HupE-UreJ family metal transporter compare
Pf6N2E2_3014 -1.4 -1.3 P2-like prophage tail protein X compare
Pf6N2E2_1381 -1.4 -1.8 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_922 -1.4 -1.8 FIG00794167: hypothetical protein compare
Pf6N2E2_2338 -1.4 -5.6 XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) compare
Pf6N2E2_162 -1.4 -4.6 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) compare
Pf6N2E2_160 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_1797 -1.3 -0.9 Transcriptional regulator compare
Pf6N2E2_5262 -1.3 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_5703 -1.3 -0.9 outer membrane protein H1 compare
Pf6N2E2_3748 -1.3 -1.5 Cytochrome B561 compare
Pf6N2E2_5175 -1.3 -1.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5394 -1.3 -3.7 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_5024 -1.3 -0.9 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_2258 -1.3 -0.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3234 -1.3 -0.9 mandelate racemase/muconate lactonizing enzyme family protein compare
Pf6N2E2_5272 -1.3 -0.9 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_74 -1.3 -0.8 DedD protein compare
Pf6N2E2_2474 -1.3 -7.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4762 -1.3 -0.8 Biotin synthesis protein BioH compare
Pf6N2E2_2750 -1.3 -3.6 Putative permease PerM (= YfgO) compare
Pf6N2E2_572 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_2422 -1.3 -5.6 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_5805 -1.3 -2.5 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_3179 -1.3 -0.8 FIG021952: putative membrane protein compare
Pf6N2E2_1039 -1.3 -0.9 Gluconolactonase compare
Pf6N2E2_2041 -1.3 -1.7 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf6N2E2_5576 -1.3 -1.4 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_4564 -1.3 -4.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4307 -1.3 -1.6 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_1412 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_3942 -1.3 -5.6 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5013 -1.3 -1.6 Putative membrane protein compare
Pf6N2E2_193 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_3727 -1.2 -1.1 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_4077 -1.2 -0.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_469 -1.2 -0.8 lipoprotein, putative compare
Pf6N2E2_750 -1.2 -2.3 Transcriptional regulator, DeoR family compare
Pf6N2E2_5679 -1.2 -2.8 hypothetical protein compare
Pf6N2E2_3251 -1.2 -6.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3455 -1.2 -0.8 Integral membrane protein YfiB compare
Pf6N2E2_2064 -1.2 -0.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_4810 -1.2 -7.7 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_5115 -1.2 -1.3 Type IV fimbrial biogenesis protein PilV compare
Pf6N2E2_734 -1.2 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_4181 -1.2 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_5073 -1.2 -6.9 Large-conductance mechanosensitive channel compare
Pf6N2E2_2350 -1.2 -0.8 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_431 -1.2 -4.1 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf6N2E2_5728 -1.2 -1.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_472 -1.2 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_4779 -1.2 -1.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_3471 -1.2 -1.3 transcriptional regulator, MerR family compare
Pf6N2E2_5496 -1.2 -0.8 FIG00953991: hypothetical protein compare
Pf6N2E2_5839 -1.2 -8.0 Glyoxylate carboligase (EC 4.1.1.47) compare
Pf6N2E2_2934 -1.2 -1.3 lipoprotein, putative compare
Pf6N2E2_50 -1.2 -7.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_2788 -1.1 -0.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_318 -1.1 -0.8 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_5550 -1.1 -2.3 Copper resistance protein C precursor compare
Pf6N2E2_3663 -1.1 -6.3 Glycosyl transferase compare
Pf6N2E2_5608 -1.1 -0.8 PAP2 superfamily protein compare
Pf6N2E2_2296 -1.1 -1.3 FIG00954767: hypothetical protein compare
Pf6N2E2_2734 -1.1 -1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_5419 -1.1 -0.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_3595 -1.1 -0.8 Large protein containing transglutaminase-like domain compare
Pf6N2E2_4732 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2778 -1.1 -0.7 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_2217 -1.1 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1401 -1.1 -2.9 FIG00955631: hypothetical protein compare
Pf6N2E2_3591 -1.1 -1.0 NUDIX hydrolase compare
Pf6N2E2_1502 -1.1 -0.6 Two-component system regulatory protein compare
Pf6N2E2_453 -1.1 -0.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_3284 -1.1 -0.7 Septum formation protein Maf compare
Pf6N2E2_443 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5780 -1.1 -2.2 Periplasmic protease compare
Pf6N2E2_3916 -1.1 -1.6 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_1028 -1.1 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_2849 -1.1 -0.7 Chromosome initiation inhibitor compare
Pf6N2E2_1435 -1.1 -1.4 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_848 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_1014 -1.1 -0.7 Nitrate/nitrite transporter compare
Pf6N2E2_391 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_1705 -1.1 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5097 -1.1 -0.7 FIG00953595: hypothetical protein compare
Pf6N2E2_3841 -1.1 -2.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_384 -1.1 -5.0 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5316 -1.1 -0.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3237 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_3428 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_4715 -1.0 -0.7 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_164 -1.0 -4.0 Ribose operon repressor compare
Pf6N2E2_4541 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_432 -1.0 -4.3 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf6N2E2_2795 -1.0 -0.6 putative exported protein compare
Pf6N2E2_6085 -1.0 -0.6 Aha1 domain superfamily compare
Pf6N2E2_2506 -1.0 -5.5 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5771 -1.0 -5.0 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_1875 -1.0 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_1089 -1.0 -0.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_956 -1.0 -0.7 FIG01210404: hypothetical protein compare
Pf6N2E2_165 -1.0 -0.6 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_4918 -1.0 -1.3 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_5530 -1.0 -1.5 FIG00955846: hypothetical protein compare
Pf6N2E2_16 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_1035 -1.0 -0.9 MotA/TolQ/ExbB proton channel family protein compare
Pf6N2E2_552 -1.0 -0.6 Uncharacterized protein ImpF compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Ying_Nucleobase14 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Nucleobase14 across organisms