Experiment set24S415 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Nucleobase14 rep A; time point 2

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4451 +2.2 18.9 FIG139438: lipoprotein B compare
Pf6N2E2_2312 +2.0 4.2 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2754 +1.9 3.4 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_2447 +1.8 5.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_754 +1.6 1.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5705 +1.6 8.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2527 +1.6 13.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1393 +1.6 5.6 hypothetical protein compare
Pf6N2E2_4153 +1.5 6.6 Sensory box histidine kinase compare
Pf6N2E2_1392 +1.4 3.4 sensor histidine kinase compare
Pf6N2E2_4601 +1.4 1.8 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5520 +1.4 7.7 Sensory box histidine kinase compare
Pf6N2E2_4159 +1.4 7.8 Cytochrome c4 compare
Pf6N2E2_1074 +1.3 1.2 FIG00953356: hypothetical protein compare
Pf6N2E2_2166 +1.2 7.6 protein of unknown function DUF6, transmembrane compare
Pf6N2E2_3466 +1.2 1.9 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_2534 +1.2 1.6 Cell division protein BolA compare
Pf6N2E2_4889 +1.2 8.6 Putative transport protein compare
Pf6N2E2_2279 +1.2 3.4 FIG00954981: hypothetical protein compare
Pf6N2E2_5425 +1.1 1.6 hypothetical protein compare
Pf6N2E2_5155 +1.1 3.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2306 +1.1 1.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1162 +1.1 1.7 Transmembrane amino acid efflux protein compare
Pf6N2E2_3037 +1.1 6.4 RNA polymerase sigma factor RpoS compare
Pf6N2E2_5840 +1.0 3.0 hypothetical protein compare
Pf6N2E2_1389 +1.0 8.0 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_3326 +1.0 1.0 hypothetical protein compare
Pf6N2E2_3303 +1.0 2.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2755 +1.0 1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3072 +1.0 6.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_817 +1.0 6.6 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_3571 +1.0 3.5 Urease accessory protein UreF compare
Pf6N2E2_4773 +1.0 0.9 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2714 +1.0 1.1 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_5676 +1.0 2.5 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_98 +1.0 0.6 putative transmembrane protein compare
Pf6N2E2_2605 +0.9 9.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4187 +0.9 9.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4050 +0.9 2.0 FIG00953718: hypothetical protein compare
Pf6N2E2_4540 +0.9 2.1 hypothetical protein compare
Pf6N2E2_4417 +0.9 5.7 Protein of unknown function DUF484 compare
Pf6N2E2_2018 +0.9 0.9 hypothetical protein compare
Pf6N2E2_3607 +0.9 6.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2640 +0.9 0.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2606 +0.9 7.8 hypothetical protein compare
Pf6N2E2_2469 +0.9 5.1 hypothetical protein compare
Pf6N2E2_6099 +0.9 0.6 tRNA-Glu-TTC compare
Pf6N2E2_2919 +0.9 1.3 FIG00955830: hypothetical protein compare
Pf6N2E2_5554 +0.8 4.6 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_4188 +0.8 0.6 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_4459 +0.8 0.7 Transcriptional regulator, GntR family compare
Pf6N2E2_3261 +0.8 8.0 hypothetical protein compare
Pf6N2E2_3480 +0.8 0.6 Transcriptional regulator, ArsR family compare
Pf6N2E2_2594 +0.8 5.3 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_1431 +0.8 1.1 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_2899 +0.8 2.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_156 +0.8 1.9 Carbon storage regulator compare
Pf6N2E2_114 +0.8 1.3 Polysaccharide biosynthesis protein compare
Pf6N2E2_3206 +0.8 0.8 hypothetical protein compare
Pf6N2E2_1394 +0.8 4.0 FIG00953323: hypothetical protein compare
Pf6N2E2_5677 +0.8 0.7 Carbon storage regulator compare
Pf6N2E2_5238 +0.8 2.6 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_2167 +0.8 3.9 hypothetical protein compare
Pf6N2E2_3938 +0.8 5.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3901 +0.7 1.3 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_6045 +0.7 0.9 hypothetical protein compare
Pf6N2E2_4467 +0.7 1.3 hypothetical protein compare
Pf6N2E2_2829 +0.7 1.2 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_693 +0.7 0.8 hypothetical protein compare
Pf6N2E2_2321 +0.7 3.5 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf6N2E2_4548 +0.7 0.8 hypothetical protein compare
Pf6N2E2_2148 +0.7 1.7 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_54 +0.7 1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2428 +0.7 5.0 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_1315 +0.7 2.0 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_2900 +0.7 1.7 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_5621 +0.7 3.0 DNA-binding response regulator compare
Pf6N2E2_3829 +0.7 2.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_3655 +0.7 6.3 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_1382 +0.7 4.8 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_2758 +0.7 5.2 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_4476 +0.7 3.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_2309 +0.7 3.3 hypothetical protein compare
Pf6N2E2_1436 +0.7 2.0 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_3190 +0.7 3.8 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_2165 +0.7 5.3 Uncharacterized conserved protein compare
Pf6N2E2_5365 +0.7 2.3 Heavy metal sensor histidine kinase compare
Pf6N2E2_1516 +0.7 1.7 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_1819 +0.7 1.8 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_5695 +0.6 4.3 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2225 +0.6 0.4 FIG00953489: hypothetical protein compare
Pf6N2E2_3454 +0.6 3.1 hypothetical protein compare
Pf6N2E2_2625 +0.6 1.7 Flagellar P-ring protein FlgI compare
Pf6N2E2_2865 +0.6 4.7 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf6N2E2_4797 +0.6 2.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3641 +0.6 0.9 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_2278 +0.6 5.0 Transcription-repair coupling factor compare
Pf6N2E2_3656 +0.6 4.6 Probable transcription regulator Mig-14 compare
Pf6N2E2_4455 +0.6 3.6 Glutamate transport ATP-binding protein compare
Pf6N2E2_4570 +0.6 0.9 Cation/multidrug efflux pump compare
Pf6N2E2_4364 +0.6 1.7 Protein YicC compare
Pf6N2E2_5086 +0.6 0.3 hypothetical protein compare
Pf6N2E2_2589 +0.6 2.4 Flagellar protein FliJ compare
Pf6N2E2_4618 +0.6 2.7 Chemotaxis signal transduction protein compare
Pf6N2E2_474 +0.6 1.4 Transcriptional regulator, ArsR family compare
Pf6N2E2_1718 +0.6 1.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_438 +0.6 3.1 hypothetical protein compare
Pf6N2E2_5375 +0.6 1.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3499 +0.6 0.8 Permeases of the major facilitator superfamily compare
Pf6N2E2_5902 +0.6 1.3 hypothetical protein compare
Pf6N2E2_1099 +0.6 0.9 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_1309 +0.6 2.2 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60) compare
Pf6N2E2_1424 +0.6 0.8 transcriptional regulator, TetR family compare
Pf6N2E2_446 +0.6 3.2 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_5153 +0.6 3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_2579 +0.6 2.7 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_5088 +0.6 1.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4263 +0.6 1.2 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_2576 +0.6 4.4 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_1782 +0.6 1.0 STAS domain protein compare
Pf6N2E2_2712 +0.6 3.1 Permeases of the major facilitator superfamily compare
Pf6N2E2_2590 +0.6 3.8 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_5534 +0.6 1.1 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3885 +0.6 1.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_2593 +0.5 2.7 Flagellar M-ring protein FliF compare
Pf6N2E2_4349 +0.5 1.1 Superfamily II DNA and RNA helicases compare
Pf6N2E2_5691 +0.5 2.9 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_2384 +0.5 1.4 CmpX compare
Pf6N2E2_1935 +0.5 1.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2313 +0.5 2.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3635 +0.5 0.8 FIG00953138: hypothetical protein compare
Pf6N2E2_2501 +0.5 0.6 hypothetical protein compare
Pf6N2E2_3009 +0.5 2.2 Phage tail tube protein compare
Pf6N2E2_2563 +0.5 3.9 FIG00953562: hypothetical protein compare
Pf6N2E2_5132 +0.5 3.1 NADH dehydrogenase (EC 1.6.99.3) compare
Pf6N2E2_1341 +0.5 1.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_4982 +0.5 1.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_5768 +0.5 1.1 DNA recombination-dependent growth factor C compare
Pf6N2E2_2311 +0.5 3.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2592 +0.5 2.8 Flagellar motor switch protein FliG compare
Pf6N2E2_5689 +0.5 1.8 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_2872 +0.5 3.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_3778 +0.5 1.2 FIG00954300: hypothetical protein compare
Pf6N2E2_4080 +0.5 1.7 FIG00953722: hypothetical protein compare
Pf6N2E2_2034 +0.5 0.4 Methyltransferase compare
Pf6N2E2_399 +0.5 1.2 Iron siderophore sensor protein compare
Pf6N2E2_4369 +0.5 1.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1989 +0.5 1.9 hypothetical protein compare
Pf6N2E2_68 +0.5 0.8 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_3740 +0.5 1.6 General secretion pathway protein J compare
Pf6N2E2_631 +0.5 2.2 2-ketogluconate utilization repressor PtxS compare
Pf6N2E2_2399 +0.5 3.4 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_476 +0.5 0.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2577 +0.5 2.8 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_4673 +0.5 2.8 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_4004 +0.5 2.0 Sulfate transport system permease protein CysT compare
Pf6N2E2_423 +0.5 1.0 Putative phosphatase YfbT compare
Pf6N2E2_2007 +0.5 1.8 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_3560 +0.5 1.8 membrane protein, putative compare
Pf6N2E2_4120 +0.5 3.8 Trk system potassium uptake protein TrkA compare
Pf6N2E2_2427 +0.5 2.4 DNA damage response gene with a putative DNA binding domain and often regulated by LexA (PA0922-like) (from data) compare
Pf6N2E2_5134 +0.5 0.9 FIG060329: MOSC domain protein compare
Pf6N2E2_5069 +0.5 1.2 putative Cytochrome bd2, subunit II compare
Pf6N2E2_1391 +0.5 0.5 DNA-binding response regulator, LuxR family compare
Pf6N2E2_493 +0.5 0.9 YD repeat protein compare
Pf6N2E2_159 +0.5 1.0 DNA damage resistance protein (from data) compare
Pf6N2E2_1279 +0.5 0.7 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_4947 +0.5 2.6 FIG00954030: hypothetical protein compare
Pf6N2E2_2152 +0.5 0.4 hypothetical protein compare
Pf6N2E2_1195 +0.5 1.1 hypothetical protein compare
Pf6N2E2_3015 +0.5 0.6 hypothetical protein compare
Pf6N2E2_603 +0.5 0.6 FIG00953934: hypothetical protein compare
Pf6N2E2_33 +0.5 1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4383 +0.5 3.4 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_608 +0.5 2.6 Transcriptional regulator of the arabinose operon in Shewanella, GntR family compare
Pf6N2E2_413 +0.5 1.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_2201 +0.5 2.0 Transmembrane regulator protein PrtR compare
Pf6N2E2_5748 +0.5 0.4 Transcriptional activator protein LuxR compare
Pf6N2E2_3961 +0.5 3.2 Outer membrane protein assembly factor YaeT precursor compare
Pf6N2E2_4276 +0.5 1.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2168 +0.5 0.9 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf6N2E2_2585 +0.5 3.5 Flagellar hook-length control protein FliK compare
Pf6N2E2_4084 +0.5 3.8 Transcriptional regulator compare
Pf6N2E2_4935 +0.5 1.1 Fic family protein compare
Pf6N2E2_1515 +0.5 1.4 Cell division protein FtsH (EC 3.4.24.-) compare
Pf6N2E2_1340 +0.4 1.6 major pilin protein fimA compare
Pf6N2E2_1330 +0.4 2.0 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
Pf6N2E2_1385 +0.4 1.2 FIG00956261: hypothetical protein compare
Pf6N2E2_2732 +0.4 2.6 Transcriptional regulator, LysR family compare
Pf6N2E2_988 +0.4 1.3 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_3652 +0.4 2.7 Cation transport ATPase compare
Pf6N2E2_3719 +0.4 1.5 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein compare
Pf6N2E2_2483 +0.4 0.7 Deoxyribonuclease TatD compare
Pf6N2E2_2964 +0.4 0.7 FIG006285: ICC-like protein phosphoesterase compare
Pf6N2E2_719 +0.4 0.4 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_863 +0.4 2.1 Transcriptional regulator, IclR family compare
Pf6N2E2_2583 +0.4 1.9 Flagellar motor switch protein FliM compare
Pf6N2E2_561 +0.4 2.7 Uncharacterized protein ImpA compare
Pf6N2E2_1477 +0.4 2.0 hypothetical protein compare
Pf6N2E2_4587 +0.4 2.5 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Ying_Nucleobase14 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Nucleobase14 across organisms