Experiment set24S414 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_OrganicAcid7 rep C; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3783 -6.7 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3782 -6.2 -6.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2074 -5.1 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2277 -3.7 -3.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_71 -3.5 -2.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3661 -3.5 -17.4 hypothetical protein compare
Pf6N2E2_3932 -3.5 -2.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3940 -3.3 -6.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3842 -3.2 -2.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3645 -3.1 -11.1 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_3820 -3.1 -6.1 hypothetical protein compare
Pf6N2E2_4473 -2.9 -8.5 HlyD family secretion protein compare
Pf6N2E2_3610 -2.7 -1.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3134 -2.7 -1.2 hypothetical protein compare
Pf6N2E2_63 -2.7 -1.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3251 -2.7 -3.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3630 -2.7 -2.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_64 -2.7 -1.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5177 -2.6 -2.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_77 -2.5 -1.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_50 -2.5 -4.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_5257 -2.5 -5.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3252 -2.4 -1.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2822 -2.4 -8.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2496 -2.4 -1.4 FIG00956575: hypothetical protein compare
Pf6N2E2_66 -2.3 -2.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3751 -2.3 -6.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4826 -2.3 -1.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3665 -2.3 -1.4 serine/threonine protein kinase compare
Pf6N2E2_5258 -2.3 -1.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3015 -2.3 -1.5 hypothetical protein compare
Pf6N2E2_2753 -2.3 -5.0 HtrA protease/chaperone protein compare
Pf6N2E2_3240 -2.2 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4048 -2.2 -1.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4601 -2.2 -1.5 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2217 -2.2 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3687 -2.2 -1.4 FIG00959437: hypothetical protein compare
Pf6N2E2_3899 -2.1 -12.2 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2675 -2.1 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_302 -2.1 -3.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3841 -2.1 -2.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3752 -2.1 -10.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2518 -2.0 -3.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4471 -2.0 -6.5 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5155 -2.0 -4.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4307 -2.0 -1.9 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_6099 -2.0 -0.8 tRNA-Glu-TTC compare
Pf6N2E2_2501 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_500 -1.9 -1.3 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_4472 -1.9 -10.2 ABC-type multidrug transport system, permease component compare
Pf6N2E2_4596 -1.9 -1.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2071 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_51 -1.8 -6.6 hypothetical protein compare
Pf6N2E2_5455 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_3839 -1.8 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3248 -1.8 -7.9 Probable transmembrane protein compare
Pf6N2E2_3271 -1.8 -4.8 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4825 -1.8 -1.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3253 -1.8 -1.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5242 -1.7 -2.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5679 -1.7 -3.2 hypothetical protein compare
Pf6N2E2_5647 -1.7 -3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_2487 -1.7 -0.7 FIG00956090: hypothetical protein compare
Pf6N2E2_4597 -1.7 -1.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2473 -1.7 -0.7 Major outer membrane lipoprotein I compare
Pf6N2E2_919 -1.7 -1.1 FIG00954373: hypothetical protein compare
Pf6N2E2_6035 -1.7 -1.1 alpha/beta hydrolase fold compare
Pf6N2E2_4990 -1.7 -1.1 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_5666 -1.7 -2.2 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_953 -1.7 -1.1 FIG00958851: hypothetical protein compare
Pf6N2E2_4710 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_2139 -1.6 -4.1 Paraquat-inducible protein A compare
Pf6N2E2_425 -1.6 -1.1 FIG00957304: hypothetical protein compare
Pf6N2E2_4907 -1.6 -9.5 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_4799 -1.6 -12.1 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_1246 -1.6 -1.0 FIG00961372: hypothetical protein compare
Pf6N2E2_5728 -1.6 -1.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4969 -1.6 -0.6 hypothetical protein compare
Pf6N2E2_2162 -1.6 -1.1 Cytochrome c4 compare
Pf6N2E2_3573 -1.6 -1.0 HupE-UreJ family metal transporter compare
Pf6N2E2_4801 -1.6 -11.4 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_3984 -1.5 -10.2 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3763 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_4351 -1.5 -9.7 Predicted signal transduction protein compare
Pf6N2E2_156 -1.5 -2.3 Carbon storage regulator compare
Pf6N2E2_3825 -1.5 -1.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_5910 -1.5 -1.4 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_2073 -1.5 -3.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4150 -1.5 -1.0 probable exported protein YPO0432 compare
Pf6N2E2_939 -1.5 -1.7 hypothetical protein compare
Pf6N2E2_4564 -1.5 -4.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_74 -1.5 -0.9 DedD protein compare
Pf6N2E2_1258 -1.4 -1.0 FIG00960119: hypothetical protein compare
Pf6N2E2_3346 -1.4 -6.2 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_4762 -1.4 -0.9 Biotin synthesis protein BioH compare
Pf6N2E2_2324 -1.4 -2.0 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_4187 -1.4 -12.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3938 -1.4 -8.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_5175 -1.4 -1.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_1412 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_719 -1.4 -0.7 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_3603 -1.4 -5.3 FIG003573: hypothetical protein compare
Pf6N2E2_2282 -1.4 -2.6 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2752 -1.4 -2.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4423 -1.4 -1.3 FIG00953342: hypothetical protein compare
Pf6N2E2_3037 -1.4 -6.5 RNA polymerase sigma factor RpoS compare
Pf6N2E2_4077 -1.4 -0.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1759 -1.3 -1.2 uncharacterized domain 1 compare
Pf6N2E2_4075 -1.3 -7.6 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3607 -1.3 -5.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_1749 -1.3 -1.2 Cyn operon transcriptional activator compare
Pf6N2E2_5820 -1.3 -0.9 FIG00957914: hypothetical protein compare
Pf6N2E2_1959 -1.3 -0.9 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_4800 -1.3 -9.6 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_2064 -1.3 -0.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_4624 -1.3 -0.9 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3826 -1.3 -3.8 Nitrogen regulation protein NR(I) compare
Pf6N2E2_472 -1.3 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_2591 -1.3 -0.9 Flagellar assembly protein FliH compare
Pf6N2E2_5527 -1.3 -2.2 Cold shock protein CspC compare
Pf6N2E2_3942 -1.3 -6.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_734 -1.3 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_3659 -1.3 -6.9 Protein fixF compare
Pf6N2E2_3261 -1.3 -10.6 hypothetical protein compare
Pf6N2E2_4181 -1.3 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_2474 -1.3 -7.8 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2465 -1.3 -2.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3201 -1.3 -2.0 Transcriptional regulator, MerR family compare
Pf6N2E2_5272 -1.3 -1.2 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_5676 -1.2 -1.6 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5576 -1.2 -1.4 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_848 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_443 -1.2 -0.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_453 -1.2 -0.8 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_5950 -1.2 -1.8 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4988 -1.2 -2.9 Antiholin-like protein LrgA compare
Pf6N2E2_4070 -1.2 -1.1 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_2778 -1.2 -0.8 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_5231 -1.2 -2.1 COG3380: Amine oxidase, flavin-containing compare
Pf6N2E2_4732 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_1376 -1.2 -1.5 probable transmembrane protein compare
Pf6N2E2_1028 -1.2 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_2849 -1.2 -0.8 Chromosome initiation inhibitor compare
Pf6N2E2_1705 -1.2 -0.5 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3170 -1.2 -4.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5703 -1.2 -1.1 outer membrane protein H1 compare
Pf6N2E2_331 -1.2 -1.6 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_2300 -1.2 -1.6 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_1089 -1.2 -0.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_2072 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_165 -1.2 -0.7 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_6085 -1.2 -0.7 Aha1 domain superfamily compare
Pf6N2E2_1743 -1.2 -1.5 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_4454 -1.1 -4.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3237 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_3198 -1.1 -0.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_1875 -1.1 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2795 -1.1 -0.7 putative exported protein compare
Pf6N2E2_1404 -1.1 -1.3 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_237 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2447 -1.1 -5.2 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5219 -1.1 -2.8 FIG140336: TPR domain protein compare
Pf6N2E2_193 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_552 -1.1 -0.7 Uncharacterized protein ImpF compare
Pf6N2E2_2688 -1.1 -1.6 YD repeat protein compare
Pf6N2E2_4829 -1.1 -2.0 OsmC/Ohr family protein compare
Pf6N2E2_1399 -1.1 -0.7 Transcriptional regulator, LuxR family compare
Pf6N2E2_3672 -1.1 -5.3 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_2806 -1.1 -1.0 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_5553 -1.1 -3.4 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_295 -1.1 -1.0 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_2218 -1.1 -1.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4258 -1.1 -1.2 FIG00953800: hypothetical protein compare
Pf6N2E2_3284 -1.1 -1.0 Septum formation protein Maf compare
Pf6N2E2_6007 -1.1 -0.7 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_5111 -1.1 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_1981 -1.1 -0.7 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4306 -1.1 -2.0 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_1886 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_5720 -1.1 -0.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_1746 -1.1 -1.4 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_4163 -1.1 -1.5 FIG00953549: hypothetical protein compare
Pf6N2E2_3912 -1.1 -0.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_3221 -1.1 -0.7 FIG00352444: hypothetical protein compare
Pf6N2E2_1885 -1.1 -1.2 Transcriptional regulator, AraC family compare
Pf6N2E2_2318 -1.1 -9.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2168 -1.1 -1.2 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf6N2E2_3169 -1.1 -0.7 Membrane proteins related to metalloendopeptidases compare
Pf6N2E2_973 -1.1 -1.5 Single-stranded DNA-binding protein compare
Pf6N2E2_5030 -1.1 -5.2 Transcriptional regulator, AsnC family compare
Pf6N2E2_638 -1.1 -0.9 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_65 -1.0 -2.8 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf6N2E2_3003 -1.0 -0.9 Bacteriophage protein GP46 compare
Pf6N2E2_3720 -1.0 -0.6 FIG027190: Putative transmembrane protein compare
Pf6N2E2_4761 -1.0 -0.7 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2152 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_1448 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_4083 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_4488 -1.0 -1.5 Ribonucleotide reductase, alpha subunit compare
Pf6N2E2_1031 -1.0 -1.5 Alkanesulfonates transport system permease protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Ying_OrganicAcid7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_OrganicAcid7 across organisms