Experiment set24S413 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_OrganicAcid7 rep B; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -7.6 -5.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -6.3 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -4.3 -4.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2277 -3.7 -3.6 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_71 -3.5 -2.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3940 -3.4 -2.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3842 -3.3 -2.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3932 -3.0 -3.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3661 -2.9 -17.1 hypothetical protein compare
Pf6N2E2_3820 -2.8 -4.4 hypothetical protein compare
Pf6N2E2_3610 -2.7 -1.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_63 -2.7 -1.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4473 -2.7 -11.3 HlyD family secretion protein compare
Pf6N2E2_5177 -2.7 -1.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3171 -2.7 -1.1 hypothetical protein compare
Pf6N2E2_3251 -2.7 -1.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_64 -2.7 -1.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3645 -2.7 -13.1 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_3630 -2.7 -2.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_50 -2.5 -5.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_77 -2.5 -1.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5257 -2.5 -5.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3252 -2.5 -1.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_451 -2.4 -1.5 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4826 -2.3 -1.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3665 -2.3 -1.4 serine/threonine protein kinase compare
Pf6N2E2_5258 -2.3 -1.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3346 -2.3 -8.2 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2753 -2.3 -5.2 HtrA protease/chaperone protein compare
Pf6N2E2_66 -2.3 -1.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3751 -2.2 -6.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3240 -2.2 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4048 -2.2 -1.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5155 -2.2 -4.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3687 -2.2 -1.4 FIG00959437: hypothetical protein compare
Pf6N2E2_2675 -2.1 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3841 -2.1 -2.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3984 -2.1 -10.7 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3752 -2.1 -10.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_302 -2.1 -3.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4307 -2.0 -1.9 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_4471 -2.0 -6.6 ABC-type multidrug transport system, permease component compare
Pf6N2E2_962 -2.0 -1.3 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_3899 -2.0 -11.6 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_6099 -2.0 -0.8 tRNA-Glu-TTC compare
Pf6N2E2_2822 -2.0 -7.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_5950 -1.9 -1.9 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4472 -1.9 -9.9 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2071 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_2518 -1.9 -4.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4596 -1.9 -1.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3839 -1.9 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5455 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_4825 -1.8 -1.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3253 -1.8 -1.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5728 -1.8 -1.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2073 -1.7 -3.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3248 -1.7 -6.6 Probable transmembrane protein compare
Pf6N2E2_178 -1.7 -0.7 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3015 -1.7 -1.6 hypothetical protein compare
Pf6N2E2_6035 -1.7 -1.1 alpha/beta hydrolase fold compare
Pf6N2E2_4907 -1.7 -11.0 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_2487 -1.7 -0.7 FIG00956090: hypothetical protein compare
Pf6N2E2_4799 -1.7 -13.0 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_4779 -1.7 -1.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_953 -1.7 -1.1 FIG00958851: hypothetical protein compare
Pf6N2E2_51 -1.7 -5.8 hypothetical protein compare
Pf6N2E2_4710 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_4597 -1.7 -1.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4801 -1.6 -12.0 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_3826 -1.6 -4.2 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4969 -1.6 -0.6 hypothetical protein compare
Pf6N2E2_1246 -1.6 -1.0 FIG00961372: hypothetical protein compare
Pf6N2E2_5666 -1.6 -2.8 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3573 -1.6 -1.0 HupE-UreJ family metal transporter compare
Pf6N2E2_3763 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_4564 -1.5 -4.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5231 -1.5 -2.0 COG3380: Amine oxidase, flavin-containing compare
Pf6N2E2_4601 -1.5 -1.4 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_605 -1.5 -1.7 FIG002465: BNR repeat protein compare
Pf6N2E2_5576 -1.5 -1.4 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_4171 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_3603 -1.4 -5.6 FIG003573: hypothetical protein compare
Pf6N2E2_74 -1.4 -0.9 DedD protein compare
Pf6N2E2_3179 -1.4 -0.9 FIG021952: putative membrane protein compare
Pf6N2E2_3037 -1.4 -7.9 RNA polymerase sigma factor RpoS compare
Pf6N2E2_1412 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_5175 -1.4 -1.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5242 -1.4 -1.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_469 -1.4 -0.9 lipoprotein, putative compare
Pf6N2E2_3323 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_5676 -1.4 -1.6 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_4077 -1.4 -0.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3938 -1.3 -8.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4800 -1.3 -9.6 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_3271 -1.3 -4.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_318 -1.3 -0.9 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_734 -1.3 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_472 -1.3 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_3261 -1.3 -10.0 hypothetical protein compare
Pf6N2E2_3825 -1.3 -1.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2474 -1.3 -8.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2465 -1.3 -2.5 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4181 -1.3 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_453 -1.3 -0.8 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2300 -1.3 -2.1 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_2788 -1.3 -0.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_5095 -1.3 -0.8 Putative inner membrane protein (Fragment) compare
Pf6N2E2_2778 -1.2 -0.8 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_4732 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_1502 -1.2 -0.7 Two-component system regulatory protein compare
Pf6N2E2_3264 -1.2 -5.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4070 -1.2 -1.1 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_1715 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_3607 -1.2 -5.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_6085 -1.2 -0.7 Aha1 domain superfamily compare
Pf6N2E2_2318 -1.2 -10.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_1028 -1.2 -0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_1705 -1.2 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2849 -1.2 -0.8 Chromosome initiation inhibitor compare
Pf6N2E2_5679 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_3748 -1.2 -1.5 Cytochrome B561 compare
Pf6N2E2_4083 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_3198 -1.2 -0.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3170 -1.2 -4.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_1279 -1.2 -1.3 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_1089 -1.2 -0.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_5097 -1.2 -0.8 FIG00953595: hypothetical protein compare
Pf6N2E2_1749 -1.2 -1.0 Cyn operon transcriptional activator compare
Pf6N2E2_1875 -1.1 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_5647 -1.1 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2320 -1.1 -8.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3516 -1.1 -1.6 Probable transmembrane protein compare
Pf6N2E2_552 -1.1 -0.7 Uncharacterized protein ImpF compare
Pf6N2E2_81 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_1399 -1.1 -0.7 Transcriptional regulator, LuxR family compare
Pf6N2E2_165 -1.1 -0.7 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_1671 -1.1 -1.0 Transcriptional regulator, TetR family compare
Pf6N2E2_2282 -1.1 -2.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_1396 -1.1 -1.5 ABC transporter, ATP-binding protein compare
Pf6N2E2_2986 -1.1 -1.0 Transcriptional regulator, LuxR family compare
Pf6N2E2_237 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_1207 -1.1 -1.6 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_2806 -1.1 -1.0 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_5899 -1.1 -4.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_671 -1.1 -1.2 2-methylaconitate racemase compare
Pf6N2E2_3912 -1.1 -0.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_2688 -1.1 -1.6 YD repeat protein compare
Pf6N2E2_5553 -1.1 -3.5 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_3169 -1.1 -0.7 Membrane proteins related to metalloendopeptidases compare
Pf6N2E2_2752 -1.1 -3.4 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4727 -1.1 -1.0 Cold shock protein CspD compare
Pf6N2E2_5219 -1.1 -3.3 FIG140336: TPR domain protein compare
Pf6N2E2_638 -1.1 -1.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_1296 -1.1 -1.6 DNA-binding response regulator, LuxR family compare
Pf6N2E2_5111 -1.1 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2396 -1.1 -1.2 Sensor histidine kinase compare
Pf6N2E2_1981 -1.1 -0.7 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5301 -1.1 -1.8 FIG00957554: hypothetical protein compare
Pf6N2E2_3221 -1.1 -0.7 FIG00352444: hypothetical protein compare
Pf6N2E2_6082 -1.1 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5720 -1.1 -0.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2218 -1.1 -1.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_1639 -1.1 -2.6 ABC-type phosphate transport system, periplasmic component compare
Pf6N2E2_862 -1.1 -0.7 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_4546 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_3384 -1.1 -1.5 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_3234 -1.1 -1.2 mandelate racemase/muconate lactonizing enzyme family protein compare
Pf6N2E2_595 -1.1 -0.7 Arsenical resistance operon repressor compare
Pf6N2E2_62 -1.1 -1.2 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3120 -1.1 -1.2 Chemotaxis signal transduction protein compare
Pf6N2E2_48 -1.1 -0.6 FIG00955661: hypothetical protein compare
Pf6N2E2_3933 -1.1 -2.3 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_5517 -1.0 -1.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2196 -1.0 -1.7 FIG00953347: hypothetical protein compare
Pf6N2E2_4014 -1.0 -2.1 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_2919 -1.0 -1.1 FIG00955830: hypothetical protein compare
Pf6N2E2_4047 -1.0 -0.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3810 -1.0 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_919 -1.0 -0.9 FIG00954373: hypothetical protein compare
Pf6N2E2_5243 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_1435 -1.0 -1.4 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_2769 -1.0 -1.6 Tricarboxylate transport protein TctB compare
Pf6N2E2_5527 -1.0 -2.0 Cold shock protein CspC compare
Pf6N2E2_2794 -1.0 -0.6 putative membrane protein compare
Pf6N2E2_3720 -1.0 -0.6 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1391 -1.0 -0.6 DNA-binding response regulator, LuxR family compare
Pf6N2E2_2139 -1.0 -3.4 Paraquat-inducible protein A compare
Pf6N2E2_1085 -1.0 -0.9 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_1553 -1.0 -1.3 Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) compare
Pf6N2E2_2716 -1.0 -1.3 FIG00954793: hypothetical protein compare
Pf6N2E2_2725 -1.0 -1.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5599 -1.0 -0.6 Electron transport complex protein RnfA compare
Pf6N2E2_1431 -1.0 -0.9 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_4448 -1.0 -0.6 probable P23 protein compare
Pf6N2E2_3672 -1.0 -5.7 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_2785 -1.0 -2.2 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1203 -1.0 -0.6 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_5807 -1.0 -1.3 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_4761 -1.0 -0.9 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Ying_OrganicAcid7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_OrganicAcid7 across organisms