Experiment set24S413 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_OrganicAcid7 rep B; time point 2

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4640 +2.1 1.6 hypothetical protein compare
Pf6N2E2_5677 +1.2 1.3 Carbon storage regulator compare
Pf6N2E2_2597 +1.2 8.3 Flagellar regulatory protein FleQ compare
Pf6N2E2_2640 +1.1 0.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_4459 +1.1 0.9 Transcriptional regulator, GntR family compare
Pf6N2E2_3466 +1.0 1.6 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_16 +1.0 0.5 hypothetical protein compare
Pf6N2E2_4153 +1.0 6.0 Sensory box histidine kinase compare
Pf6N2E2_3737 +1.0 0.9 General secretion pathway protein M compare
Pf6N2E2_5452 +0.9 1.7 hypothetical protein compare
Pf6N2E2_3641 +0.9 1.6 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_5906 +0.9 1.2 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_5425 +0.9 1.3 hypothetical protein compare
Pf6N2E2_5052 +0.9 0.4 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_98 +0.9 0.5 putative transmembrane protein compare
Pf6N2E2_5468 +0.9 3.0 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_2081 +0.8 0.8 putative exported protein compare
Pf6N2E2_3293 +0.8 1.5 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_4059 +0.8 0.5 DNA-binding protein HU-alpha compare
Pf6N2E2_5093 +0.8 6.3 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_4188 +0.8 0.6 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_2835 +0.8 1.0 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_5748 +0.8 0.8 Transcriptional activator protein LuxR compare
Pf6N2E2_2594 +0.7 4.5 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_3981 +0.7 6.2 T1SS secreted agglutinin RTX compare
Pf6N2E2_2590 +0.7 4.5 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_2576 +0.7 5.1 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_2534 +0.7 0.9 Cell division protein BolA compare
Pf6N2E2_1074 +0.7 0.5 FIG00953356: hypothetical protein compare
Pf6N2E2_5965 +0.7 1.8 transcriptional regulator compare
Pf6N2E2_2625 +0.7 1.9 Flagellar P-ring protein FlgI compare
Pf6N2E2_1308 +0.7 1.3 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
Pf6N2E2_987 +0.7 1.0 hypothetical protein compare
Pf6N2E2_1746 +0.7 1.4 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_2105 +0.7 2.3 Metal transporter, ZIP family compare
Pf6N2E2_3277 +0.7 0.7 FagA protein compare
Pf6N2E2_2106 +0.7 0.5 hypothetical protein compare
Pf6N2E2_3944 +0.7 1.0 Protein of unknown function DUF81 compare
Pf6N2E2_3655 +0.7 6.1 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_399 +0.6 1.7 Iron siderophore sensor protein compare
Pf6N2E2_3033 +0.6 0.8 hypothetical protein compare
Pf6N2E2_2831 +0.6 1.9 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) compare
Pf6N2E2_4025 +0.6 0.6 hypothetical protein compare
Pf6N2E2_4421 +0.6 3.1 hypothetical protein compare
Pf6N2E2_4478 +0.6 3.9 FIG019278: hypothetical protein compare
Pf6N2E2_5178 +0.6 0.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2934 +0.6 1.2 lipoprotein, putative compare
Pf6N2E2_2312 +0.6 2.0 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_663 +0.6 0.9 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_2411 +0.6 3.3 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
Pf6N2E2_2964 +0.6 1.0 FIG006285: ICC-like protein phosphoesterase compare
Pf6N2E2_2 +0.6 1.7 FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis compare
Pf6N2E2_3326 +0.6 0.6 hypothetical protein compare
Pf6N2E2_1012 +0.6 0.5 hypothetical protein compare
Pf6N2E2_613 +0.6 0.7 lipoprotein, putative compare
Pf6N2E2_6100 +0.6 0.8 tRNA-Val-TAC compare
Pf6N2E2_2589 +0.6 1.9 Flagellar protein FliJ compare
Pf6N2E2_3480 +0.6 0.4 Transcriptional regulator, ArsR family compare
Pf6N2E2_3951 +0.6 1.4 Efflux transporter, RND family, MFP subunit compare
Pf6N2E2_3791 +0.6 3.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1065 +0.6 1.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1199 +0.6 1.3 hypothetical protein compare
Pf6N2E2_2592 +0.6 2.7 Flagellar motor switch protein FliG compare
Pf6N2E2_5044 +0.6 1.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4678 +0.6 0.5 hypothetical protein compare
Pf6N2E2_847 +0.6 2.4 Phosphoribosyl transferase domain protein compare
Pf6N2E2_775 +0.6 1.2 FIG00955061: hypothetical protein compare
Pf6N2E2_5695 +0.5 3.0 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_5391 +0.5 2.3 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf6N2E2_2588 +0.5 0.6 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2489 +0.5 1.5 UPF0028 protein YchK compare
Pf6N2E2_3844 +0.5 0.7 hypothetical protein compare
Pf6N2E2_5691 +0.5 2.8 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_3770 +0.5 1.6 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3793 +0.5 2.3 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Pf6N2E2_3698 +0.5 1.1 Nicotinamidase family protein YcaC compare
Pf6N2E2_2629 +0.5 2.4 Phenylalanine hydroxylase transcriptional activator PhhR compare
Pf6N2E2_4140 +0.5 3.8 Sodium-dependent phosphate transporter compare
Pf6N2E2_2624 +0.5 2.8 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_946 +0.5 0.8 Transcriptional regulator, LysR family compare
Pf6N2E2_3730 +0.5 2.6 Excinuclease ATPase subunit compare
Pf6N2E2_1500 +0.5 2.2 LysR family transcriptional regulator lrhA compare
Pf6N2E2_731 +0.5 1.1 Respiratory nitrate reductase delta chain (EC 1.7.99.4) compare
Pf6N2E2_568 +0.5 1.2 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) compare
Pf6N2E2_5646 +0.5 1.0 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_6064 +0.5 2.0 2-methylaconitate isomerase compare
Pf6N2E2_1840 +0.5 1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4773 +0.5 0.4 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5749 +0.5 2.1 hypothetical protein compare
Pf6N2E2_2571 +0.5 1.5 Chemotaxis response - phosphatase CheZ compare
Pf6N2E2_5611 +0.5 3.5 SAM-dependent methyltransferases compare
Pf6N2E2_493 +0.5 1.0 YD repeat protein compare
Pf6N2E2_5375 +0.5 2.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3624 +0.5 1.8 Flagellar motor rotation protein MotB compare
Pf6N2E2_3320 +0.5 1.3 hypothetical protein compare
Pf6N2E2_4488 +0.5 1.0 Ribonucleotide reductase, alpha subunit compare
Pf6N2E2_1211 +0.5 2.0 Lactoylglutathione lyase compare
Pf6N2E2_2734 +0.5 1.1 Transcriptional regulator, LysR family compare
Pf6N2E2_4399 +0.5 1.8 GGDEF domain/EAL domain protein compare
Pf6N2E2_3642 +0.5 0.9 lipoprotein, putative compare
Pf6N2E2_1740 +0.5 1.3 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_69 +0.5 3.2 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_2776 +0.5 1.4 Urea carboxylase-related ABC transporter, permease protein compare
Pf6N2E2_2158 +0.5 1.4 Signal transduction histidine kinase compare
Pf6N2E2_4068 +0.5 3.2 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_931 +0.5 2.8 hypothetical protein compare
Pf6N2E2_2593 +0.5 2.5 Flagellar M-ring protein FliF compare
Pf6N2E2_3635 +0.5 0.7 FIG00953138: hypothetical protein compare
Pf6N2E2_3983 +0.5 3.0 Membrane bound c-di-GMP receptor LapD compare
Pf6N2E2_1779 +0.5 0.9 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_2018 +0.5 0.5 hypothetical protein compare
Pf6N2E2_2448 +0.5 2.1 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_3753 +0.5 3.8 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_865 +0.5 1.9 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3717 +0.5 1.3 Lysophospholipid acyltransferase compare
Pf6N2E2_4216 +0.5 2.0 Transcriptional regulator of glmS gene, DeoR family compare
Pf6N2E2_3478 +0.4 1.4 Adenosine deaminase (EC 3.5.4.4) compare
Pf6N2E2_5943 +0.4 0.7 hypothetical protein compare
Pf6N2E2_5238 +0.4 1.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_3526 +0.4 0.9 hypothetical protein compare
Pf6N2E2_4560 +0.4 0.9 probable integral membrane protein NMA1899 compare
Pf6N2E2_2501 +0.4 0.5 hypothetical protein compare
Pf6N2E2_2564 +0.4 2.2 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_5902 +0.4 1.0 hypothetical protein compare
Pf6N2E2_1328 +0.4 1.1 Methyl-accepting chemotaxis protein compare
Pf6N2E2_5862 +0.4 0.7 Lipoprotein, putative compare
Pf6N2E2_4407 +0.4 1.5 2-Keto-D-gluconate dehydrogenase (EC 1.1.99.4), membrane-bound, gamma subunit compare
Pf6N2E2_2062 +0.4 0.3 FIG00955561: hypothetical protein compare
Pf6N2E2_3872 +0.4 0.4 hypothetical protein compare
Pf6N2E2_6045 +0.4 0.5 hypothetical protein compare
Pf6N2E2_1814 +0.4 0.7 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_5086 +0.4 0.2 hypothetical protein compare
Pf6N2E2_2857 +0.4 0.7 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_1443 +0.4 1.3 putative aldo/keto reductase compare
Pf6N2E2_4540 +0.4 0.9 hypothetical protein compare
Pf6N2E2_3827 +0.4 3.1 FIG00955429: hypothetical protein compare
Pf6N2E2_1819 +0.4 1.2 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_634 +0.4 3.3 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_5413 +0.4 1.8 Glutaredoxin NrdH compare
Pf6N2E2_3969 +0.4 2.1 Membrane-fusion protein compare
Pf6N2E2_4317 +0.4 0.5 FIG00964469: hypothetical protein compare
Pf6N2E2_971 +0.4 1.9 hypothetical protein compare
Pf6N2E2_4559 +0.4 2.6 probable integral membrane protein NMA1898 compare
Pf6N2E2_1392 +0.4 1.5 sensor histidine kinase compare
Pf6N2E2_1029 +0.4 1.5 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
Pf6N2E2_238 +0.4 0.2 hypothetical protein compare
Pf6N2E2_4272 +0.4 0.5 putative membrane protein compare
Pf6N2E2_1170 +0.4 1.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_3979 +0.4 2.1 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_3447 +0.4 1.1 FIG00959330: hypothetical protein compare
Pf6N2E2_4084 +0.4 3.8 Transcriptional regulator compare
Pf6N2E2_3625 +0.4 2.6 Flagellar motor rotation protein MotA compare
Pf6N2E2_5583 +0.4 2.2 Bacterioferritin compare
Pf6N2E2_1810 +0.4 1.3 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_2579 +0.4 1.9 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_136 +0.4 0.6 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_1287 +0.4 2.2 Mobile element protein compare
Pf6N2E2_3190 +0.4 2.5 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_3989 +0.4 1.4 FIG00958473: hypothetical protein compare
Pf6N2E2_3004 +0.4 0.8 Prophage baseplate assembly protein V compare
Pf6N2E2_1204 +0.4 1.8 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf6N2E2_3897 +0.4 1.1 hypothetical protein compare
Pf6N2E2_2262 +0.4 2.0 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_4148 +0.4 3.8 Glutamate-aspartate carrier protein compare
Pf6N2E2_1567 +0.4 0.9 FIG00964846: hypothetical protein compare
Pf6N2E2_3856 +0.4 2.5 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_5098 +0.4 0.8 Alkylphosphonate utilization operon protein PhnA compare
Pf6N2E2_5747 +0.4 1.1 Two-component response regulator compare
Pf6N2E2_848 +0.4 0.6 hypothetical protein compare
Pf6N2E2_4757 +0.4 2.7 DNA-binding domain of ModE / Molybdate-binding domain of ModE compare
Pf6N2E2_1179 +0.4 1.8 hypothetical protein compare
Pf6N2E2_2563 +0.4 3.0 FIG00953562: hypothetical protein compare
Pf6N2E2_285 +0.4 2.0 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_471 +0.4 1.5 putative metalloprotease compare
Pf6N2E2_281 +0.4 0.9 Type II and III secretion system family protein compare
Pf6N2E2_2500 +0.4 1.6 Putative membrane protein compare
Pf6N2E2_2175 +0.4 1.6 Transcriptional regulator, RpiR family compare
Pf6N2E2_5062 +0.4 1.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf6N2E2_2365 +0.4 2.5 Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) compare
Pf6N2E2_4698 +0.4 2.5 putative DNA binding protein compare
Pf6N2E2_746 +0.4 0.7 FIG00958097: hypothetical protein compare
Pf6N2E2_1650 +0.4 2.3 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_2833 +0.4 0.8 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf6N2E2_1998 +0.4 2.1 FIG01212208: hypothetical protein compare
Pf6N2E2_3472 +0.4 0.6 Probable short-chain dehydrogenase compare
Pf6N2E2_5567 +0.4 0.4 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_3830 +0.4 0.8 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_2417 +0.4 2.1 Sensor histidine kinase compare
Pf6N2E2_3128 +0.4 0.9 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_2502 +0.4 1.2 O-antigen acetylase compare
Pf6N2E2_2893 +0.4 1.9 hypothetical protein compare
Pf6N2E2_2710 +0.4 2.1 FIG00953701: hypothetical protein compare
Pf6N2E2_6038 +0.4 0.8 hypothetical protein compare
Pf6N2E2_2577 +0.4 2.5 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_3084 +0.4 1.8 Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) compare
Pf6N2E2_2749 +0.4 1.4 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
Pf6N2E2_3556 +0.4 2.6 Urease (EC 3.5.1.5) (from data) compare
Pf6N2E2_875 +0.4 1.6 putative metal chaperone, involved in Fe-nitrile hydratase activation, GTPase of COG0523 family compare
Pf6N2E2_5785 +0.4 1.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4651 +0.4 2.5 Putative threonine efflux protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Ying_OrganicAcid7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_OrganicAcid7 across organisms