Experiment set24S412 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_OrganicAcid7 rep A; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -6.7 -6.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -6.6 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -5.1 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3665 -3.7 -1.6 serine/threonine protein kinase compare
Pf6N2E2_71 -3.5 -3.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2277 -3.4 -3.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3940 -3.3 -3.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3932 -3.2 -3.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3842 -3.0 -3.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3661 -2.9 -16.3 hypothetical protein compare
Pf6N2E2_3645 -2.9 -12.2 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_5155 -2.8 -4.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_63 -2.8 -2.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2822 -2.7 -6.9 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3610 -2.7 -1.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4473 -2.7 -8.2 HlyD family secretion protein compare
Pf6N2E2_64 -2.6 -1.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3630 -2.6 -1.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3251 -2.6 -4.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5242 -2.5 -2.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5177 -2.5 -3.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_50 -2.5 -5.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_77 -2.5 -1.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2753 -2.5 -4.1 HtrA protease/chaperone protein compare
Pf6N2E2_3252 -2.4 -1.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5257 -2.3 -5.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_1834 -2.3 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4826 -2.3 -1.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3826 -2.2 -4.5 Nitrogen regulation protein NR(I) compare
Pf6N2E2_66 -2.2 -1.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3240 -2.2 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4048 -2.2 -1.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3841 -2.2 -1.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3687 -2.1 -1.4 FIG00959437: hypothetical protein compare
Pf6N2E2_3751 -2.1 -5.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3899 -2.1 -11.8 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_4601 -2.1 -1.4 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5258 -2.1 -2.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3820 -2.1 -2.7 hypothetical protein compare
Pf6N2E2_3752 -2.1 -10.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2675 -2.1 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_1085 -2.0 -1.3 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_2324 -2.0 -2.2 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_4307 -2.0 -1.8 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_3984 -2.0 -11.1 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5505 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_2518 -1.9 -3.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4471 -1.9 -5.5 ABC-type multidrug transport system, permease component compare
Pf6N2E2_4472 -1.9 -9.6 ABC-type multidrug transport system, permease component compare
Pf6N2E2_603 -1.9 -1.2 FIG00953934: hypothetical protein compare
Pf6N2E2_302 -1.9 -3.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5950 -1.9 -1.8 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4596 -1.8 -1.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3839 -1.8 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2071 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_5455 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_5622 -1.8 -1.2 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_3248 -1.8 -7.8 Probable transmembrane protein compare
Pf6N2E2_3088 -1.8 -1.1 hypothetical protein compare
Pf6N2E2_3253 -1.8 -1.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5679 -1.7 -3.7 hypothetical protein compare
Pf6N2E2_2073 -1.7 -3.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5115 -1.7 -1.2 Type IV fimbrial biogenesis protein PilV compare
Pf6N2E2_4825 -1.7 -1.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_1749 -1.7 -1.1 Cyn operon transcriptional activator compare
Pf6N2E2_178 -1.7 -0.7 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4597 -1.7 -1.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_6035 -1.7 -1.0 alpha/beta hydrolase fold compare
Pf6N2E2_5728 -1.7 -1.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_3944 -1.6 -1.1 Protein of unknown function DUF81 compare
Pf6N2E2_1709 -1.6 -1.5 multidrug resistance transporter, Bcr/CflA family compare
Pf6N2E2_4990 -1.6 -1.1 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_2487 -1.6 -0.7 FIG00956090: hypothetical protein compare
Pf6N2E2_2473 -1.6 -0.7 Major outer membrane lipoprotein I compare
Pf6N2E2_953 -1.6 -1.1 FIG00958851: hypothetical protein compare
Pf6N2E2_51 -1.6 -5.9 hypothetical protein compare
Pf6N2E2_3015 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_4710 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_4907 -1.6 -10.6 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_3271 -1.6 -5.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4969 -1.6 -0.6 hypothetical protein compare
Pf6N2E2_3573 -1.5 -1.0 HupE-UreJ family metal transporter compare
Pf6N2E2_3763 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_4801 -1.5 -10.9 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_5527 -1.5 -2.2 Cold shock protein CspC compare
Pf6N2E2_3488 -1.5 -1.7 Cu(I)-responsive transcriptional regulator compare
Pf6N2E2_3825 -1.5 -1.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_4799 -1.5 -11.2 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_5784 -1.5 -1.4 FIG01073969: hypothetical protein compare
Pf6N2E2_3346 -1.5 -5.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_5666 -1.5 -2.8 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3603 -1.5 -5.1 FIG003573: hypothetical protein compare
Pf6N2E2_5553 -1.4 -3.6 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_74 -1.4 -0.9 DedD protein compare
Pf6N2E2_4564 -1.4 -4.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2465 -1.4 -2.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5175 -1.4 -1.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5024 -1.4 -0.9 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_3037 -1.4 -7.2 RNA polymerase sigma factor RpoS compare
Pf6N2E2_3179 -1.4 -0.9 FIG021952: putative membrane protein compare
Pf6N2E2_719 -1.4 -0.8 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_4800 -1.4 -9.7 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
Pf6N2E2_4762 -1.4 -0.9 Biotin synthesis protein BioH compare
Pf6N2E2_4517 -1.4 -1.6 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_1412 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_3206 -1.4 -0.8 hypothetical protein compare
Pf6N2E2_3323 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_4083 -1.4 -1.8 hypothetical protein compare
Pf6N2E2_1723 -1.3 -1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_4077 -1.3 -0.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_469 -1.3 -0.8 lipoprotein, putative compare
Pf6N2E2_3607 -1.3 -4.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3455 -1.3 -0.9 Integral membrane protein YfiB compare
Pf6N2E2_3938 -1.3 -8.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_304 -1.3 -1.7 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_5647 -1.3 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2064 -1.3 -0.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_734 -1.3 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5806 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_2300 -1.3 -1.7 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_2139 -1.3 -3.7 Paraquat-inducible protein A compare
Pf6N2E2_466 -1.3 -0.8 Nicotinamidase (EC 3.5.1.19) compare
Pf6N2E2_2282 -1.3 -2.5 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_472 -1.3 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_3942 -1.3 -6.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3595 -1.3 -0.8 Large protein containing transglutaminase-like domain compare
Pf6N2E2_3261 -1.3 -9.4 hypothetical protein compare
Pf6N2E2_795 -1.3 -1.4 ABC transporter ATP-binding protein uup compare
Pf6N2E2_2752 -1.3 -3.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3255 -1.2 -2.0 YrbA protein compare
Pf6N2E2_4075 -1.2 -7.1 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3591 -1.2 -1.1 NUDIX hydrolase compare
Pf6N2E2_318 -1.2 -0.8 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_4779 -1.2 -1.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_4829 -1.2 -2.0 OsmC/Ohr family protein compare
Pf6N2E2_2788 -1.2 -0.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_2318 -1.2 -10.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4181 -1.2 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_5496 -1.2 -0.8 FIG00953991: hypothetical protein compare
Pf6N2E2_3170 -1.2 -4.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5272 -1.2 -1.1 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_650 -1.2 -1.1 General secretion pathway protein M compare
Pf6N2E2_3521 -1.2 -5.9 Sensor histidine kinase/response regulator compare
Pf6N2E2_2778 -1.2 -0.8 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_5419 -1.2 -0.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_1031 -1.2 -1.6 Alkanesulfonates transport system permease protein compare
Pf6N2E2_453 -1.2 -0.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_5894 -1.2 -1.9 Putative threonine efflux protein compare
Pf6N2E2_3748 -1.2 -1.4 Cytochrome B561 compare
Pf6N2E2_3659 -1.2 -7.6 Protein fixF compare
Pf6N2E2_4732 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_94 -1.2 -1.3 Cyn operon transcriptional activator compare
Pf6N2E2_3672 -1.2 -6.6 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_443 -1.2 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_660 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_5661 -1.2 -1.5 L-Arginine ABC transporter, permease protein AotQ (from data) compare
Pf6N2E2_1028 -1.2 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_4258 -1.2 -1.1 FIG00953800: hypothetical protein compare
Pf6N2E2_3237 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_6085 -1.2 -0.7 Aha1 domain superfamily compare
Pf6N2E2_2849 -1.2 -0.8 Chromosome initiation inhibitor compare
Pf6N2E2_425 -1.2 -1.1 FIG00957304: hypothetical protein compare
Pf6N2E2_2833 -1.1 -1.3 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf6N2E2_2320 -1.1 -6.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2440 -1.1 -0.7 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_2930 -1.1 -1.3 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf6N2E2_3198 -1.1 -0.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5703 -1.1 -1.1 outer membrane protein H1 compare
Pf6N2E2_1705 -1.1 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4454 -1.1 -4.5 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4775 -1.1 -2.3 Coenzyme PQQ synthesis protein B compare
Pf6N2E2_5756 -1.1 -0.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5097 -1.1 -0.7 FIG00953595: hypothetical protein compare
Pf6N2E2_2795 -1.1 -0.7 putative exported protein compare
Pf6N2E2_1089 -1.1 -0.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1875 -1.1 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_1905 -1.1 -1.0 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_165 -1.1 -0.7 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_671 -1.1 -1.2 2-methylaconitate racemase compare
Pf6N2E2_848 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_217 -1.1 -1.2 Signal transduction histidine kinase compare
Pf6N2E2_1399 -1.1 -0.7 Transcriptional regulator, LuxR family compare
Pf6N2E2_3014 -1.1 -1.2 P2-like prophage tail protein X compare
Pf6N2E2_4306 -1.1 -2.0 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_5231 -1.1 -2.0 COG3380: Amine oxidase, flavin-containing compare
Pf6N2E2_2474 -1.1 -6.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3912 -1.1 -0.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_237 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_3221 -1.1 -0.7 FIG00352444: hypothetical protein compare
Pf6N2E2_4918 -1.1 -1.4 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_552 -1.1 -0.6 Uncharacterized protein ImpF compare
Pf6N2E2_4072 -1.1 -5.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_55 -1.1 -0.7 Probable hydrolase compare
Pf6N2E2_3169 -1.1 -0.7 Membrane proteins related to metalloendopeptidases compare
Pf6N2E2_1981 -1.1 -0.7 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5720 -1.1 -0.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_5676 -1.1 -1.5 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_6045 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_3587 -1.0 -1.7 Azurin compare
Pf6N2E2_5219 -1.0 -2.5 FIG140336: TPR domain protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Ying_OrganicAcid7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_OrganicAcid7 across organisms