Experiment set24S412 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_OrganicAcid7 rep A; time point 2

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_16 +2.0 1.2 hypothetical protein compare
Pf6N2E2_1074 +1.5 1.5 FIG00953356: hypothetical protein compare
Pf6N2E2_2152 +1.3 1.2 hypothetical protein compare
Pf6N2E2_4624 +1.2 1.6 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4459 +1.2 1.1 Transcriptional regulator, GntR family compare
Pf6N2E2_1162 +1.2 1.8 Transmembrane amino acid efflux protein compare
Pf6N2E2_5677 +1.1 1.2 Carbon storage regulator compare
Pf6N2E2_4678 +1.1 1.2 hypothetical protein compare
Pf6N2E2_2835 +1.1 1.3 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_6095 +1.1 1.3 tRNA-Asn-GTT compare
Pf6N2E2_1283 +1.0 1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_946 +1.0 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_5906 +1.0 1.3 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_4153 +0.9 2.7 Sensory box histidine kinase compare
Pf6N2E2_3635 +0.9 1.6 FIG00953138: hypothetical protein compare
Pf6N2E2_4773 +0.9 0.9 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_3466 +0.9 1.4 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_1082 +0.9 1.0 CopG protein compare
Pf6N2E2_5134 +0.9 1.8 FIG060329: MOSC domain protein compare
Pf6N2E2_1103 +0.8 2.4 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
Pf6N2E2_5093 +0.8 6.5 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_2640 +0.8 0.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3106 +0.8 2.0 hypothetical protein compare
Pf6N2E2_1339 +0.8 1.4 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_4188 +0.8 0.6 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_5646 +0.8 1.5 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_1014 +0.8 1.0 Nitrate/nitrite transporter compare
Pf6N2E2_1814 +0.7 1.3 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_2682 +0.7 1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_5375 +0.7 1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_180 +0.7 0.8 Transcriptional regulator, MerR family compare
Pf6N2E2_3793 +0.7 3.3 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Pf6N2E2_1935 +0.7 1.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_231 +0.7 4.0 FIG00956946: hypothetical protein compare
Pf6N2E2_5391 +0.7 2.8 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf6N2E2_5820 +0.6 0.9 FIG00957914: hypothetical protein compare
Pf6N2E2_5862 +0.6 1.0 Lipoprotein, putative compare
Pf6N2E2_3226 +0.6 1.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2321 +0.6 3.1 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf6N2E2_1533 +0.6 0.9 membrane protein, putative compare
Pf6N2E2_399 +0.6 1.6 Iron siderophore sensor protein compare
Pf6N2E2_4092 +0.6 0.5 FIG00954395: hypothetical protein compare
Pf6N2E2_4540 +0.6 1.3 hypothetical protein compare
Pf6N2E2_1685 +0.6 1.6 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Pf6N2E2_3791 +0.6 4.0 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2483 +0.6 1.0 Deoxyribonuclease TatD compare
Pf6N2E2_2597 +0.6 3.9 Flagellar regulatory protein FleQ compare
Pf6N2E2_4506 +0.6 0.9 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_5444 +0.6 1.7 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_3539 +0.6 1.3 FIG00955840: hypothetical protein compare
Pf6N2E2_5238 +0.6 1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_3735 +0.6 2.0 LysR family transcriptional regulator YnfL compare
Pf6N2E2_5086 +0.5 0.3 hypothetical protein compare
Pf6N2E2_2018 +0.5 0.5 hypothetical protein compare
Pf6N2E2_2121 +0.5 1.7 hypothetical protein compare
Pf6N2E2_2594 +0.5 3.6 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_4348 +0.5 2.5 Autotransporter adhesin compare
Pf6N2E2_4084 +0.5 4.5 Transcriptional regulator compare
Pf6N2E2_1213 +0.5 0.8 hypothetical protein compare
Pf6N2E2_612 +0.5 1.0 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
Pf6N2E2_5462 +0.5 2.0 Signal transduction histidine kinase compare
Pf6N2E2_149 +0.5 2.7 Inner membrane component of tripartite multidrug resistance system compare
Pf6N2E2_5746 +0.5 1.0 Cobalamin synthase compare
Pf6N2E2_405 +0.5 0.5 hypothetical protein compare
Pf6N2E2_2 +0.5 1.5 FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis compare
Pf6N2E2_4545 +0.5 1.9 hypothetical protein compare
Pf6N2E2_148 +0.5 2.9 Membrane fusion component of tripartite multidrug resistance system compare
Pf6N2E2_1819 +0.5 1.4 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) compare
Pf6N2E2_2792 +0.5 1.4 Antitoxin 1 compare
Pf6N2E2_1303 +0.5 0.9 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_33 +0.5 1.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4688 +0.5 2.0 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare
Pf6N2E2_1463 +0.5 1.2 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_2635 +0.5 2.8 Transcriptional regulator, AraC family compare
Pf6N2E2_990 +0.5 2.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3276 +0.5 1.5 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_1883 +0.5 2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_3526 +0.5 0.9 hypothetical protein compare
Pf6N2E2_3285 +0.5 2.7 Rod shape-determining protein MreD compare
Pf6N2E2_4645 +0.5 1.2 Integral membrane protein compare
Pf6N2E2_2590 +0.5 3.1 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_922 +0.5 1.2 FIG00794167: hypothetical protein compare
Pf6N2E2_1046 +0.5 1.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4996 +0.5 0.6 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_493 +0.5 0.8 YD repeat protein compare
Pf6N2E2_3100 +0.5 1.1 FIG00953063: hypothetical protein compare
Pf6N2E2_5583 +0.5 2.4 Bacterioferritin compare
Pf6N2E2_1315 +0.5 1.3 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_5621 +0.5 1.9 DNA-binding response regulator compare
Pf6N2E2_5785 +0.5 1.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5695 +0.5 2.6 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2624 +0.5 2.3 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_2314 +0.5 1.9 VapB protein (antitoxin to VapC) compare
Pf6N2E2_1689 +0.5 2.6 Probable porin compare
Pf6N2E2_5057 +0.5 1.8 hypothetical protein compare
Pf6N2E2_6084 +0.5 1.6 FIG00638667: hypothetical protein compare
Pf6N2E2_1792 +0.5 0.8 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_2625 +0.5 1.2 Flagellar P-ring protein FlgI compare
Pf6N2E2_97 +0.5 1.0 putataive branched-chain amino acid transport protein AzlC compare
Pf6N2E2_2350 +0.4 0.7 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_4913 +0.4 1.7 Predicted zinc-binding protein compare
Pf6N2E2_2593 +0.4 2.2 Flagellar M-ring protein FliF compare
Pf6N2E2_433 +0.4 1.7 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Pf6N2E2_34 +0.4 0.7 Cytosine deaminase (EC 3.5.4.1) compare
Pf6N2E2_2114 +0.4 1.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1034 +0.4 0.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1778 +0.4 2.1 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_2534 +0.4 0.5 Cell division protein BolA compare
Pf6N2E2_2990 +0.4 1.8 hypothetical protein compare
Pf6N2E2_4025 +0.4 0.4 hypothetical protein compare
Pf6N2E2_1838 +0.4 0.7 6-hexanolactone hydrolase compare
Pf6N2E2_4272 +0.4 0.6 putative membrane protein compare
Pf6N2E2_4148 +0.4 3.9 Glutamate-aspartate carrier protein compare
Pf6N2E2_5069 +0.4 1.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_54 +0.4 1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_234 +0.4 0.6 FIG00454312: hypothetical protein compare
Pf6N2E2_5445 +0.4 1.3 Putative preQ0 transporter compare
Pf6N2E2_2267 +0.4 1.4 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_1516 +0.4 1.0 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_281 +0.4 1.0 Type II and III secretion system family protein compare
Pf6N2E2_3856 +0.4 2.4 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_2262 +0.4 2.3 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_4268 +0.4 2.1 Pyridoxal kinase (EC 2.7.1.35) compare
Pf6N2E2_5902 +0.4 0.9 hypothetical protein compare
Pf6N2E2_1742 +0.4 1.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_1584 +0.4 0.6 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_1989 +0.4 1.6 hypothetical protein compare
Pf6N2E2_5468 +0.4 1.6 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_4478 +0.4 2.3 FIG019278: hypothetical protein compare
Pf6N2E2_1514 +0.4 0.8 lipoprotein OprI, putative compare
Pf6N2E2_3125 +0.4 1.2 Transcriptional regulators, LysR family compare
Pf6N2E2_4636 +0.4 2.3 periplasmic binding protein, putative compare
Pf6N2E2_2577 +0.4 2.5 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_3326 +0.4 0.4 hypothetical protein compare
Pf6N2E2_4594 +0.4 0.8 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_445 +0.4 2.9 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_1312 +0.4 0.4 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_3849 +0.4 0.6 FIG00954739: hypothetical protein compare
Pf6N2E2_5842 +0.4 0.4 Transcriptional regulator, TetR family compare
Pf6N2E2_3563 +0.4 1.3 FMN-dependent NADH-azoreductase compare
Pf6N2E2_2034 +0.4 0.3 Methyltransferase compare
Pf6N2E2_1840 +0.4 0.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1431 +0.4 0.5 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_5394 +0.4 1.1 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_3140 +0.4 1.7 FIG00953680: hypothetical protein compare
Pf6N2E2_3161 +0.4 2.0 hypothetical protein compare
Pf6N2E2_5372 +0.4 2.2 Inner membrane component of tripartite multidrug resistance system compare
Pf6N2E2_543 +0.4 1.7 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf6N2E2_3788 +0.4 1.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_1287 +0.4 1.3 Mobile element protein compare
Pf6N2E2_2182 +0.4 1.0 hypothetical protein compare
Pf6N2E2_319 +0.4 2.3 DUF1850 domain-containing protein compare
Pf6N2E2_2395 +0.4 1.1 Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf6N2E2_3794 +0.4 2.0 Proline iminopeptidase (EC 3.4.11.5) compare
Pf6N2E2_5144 +0.4 0.9 Osmotically inducible protein OsmY compare
Pf6N2E2_5577 +0.4 2.3 Uncharacterized isomerase yddE, PhzC-PhzF family compare
Pf6N2E2_3480 +0.4 0.3 Transcriptional regulator, ArsR family compare
Pf6N2E2_4322 +0.4 1.3 hypothetical protein compare
Pf6N2E2_2081 +0.4 0.3 putative exported protein compare
Pf6N2E2_138 +0.4 0.6 Alpha/beta hydrolase fold (EC 3.8.1.5) compare
Pf6N2E2_1150 +0.4 1.0 CBS-domain-containing membrane protein compare
Pf6N2E2_3701 +0.4 1.2 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_867 +0.4 1.5 PhaK-like protein compare
Pf6N2E2_3190 +0.4 2.2 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_4570 +0.4 0.5 Cation/multidrug efflux pump compare
Pf6N2E2_145 +0.4 3.4 putative exported protein compare
Pf6N2E2_144 +0.4 3.4 Uncharacterized protein YtfM precursor compare
Pf6N2E2_624 +0.4 2.1 hypothetical protein PA3071 compare
Pf6N2E2_4404 +0.4 1.6 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein compare
Pf6N2E2_4673 +0.4 2.1 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_3529 +0.4 0.2 Toxin A compare
Pf6N2E2_3790 +0.4 2.0 hypothetical protein compare
Pf6N2E2_5619 +0.4 1.8 Putative two-component system sensor kinase compare
Pf6N2E2_3870 +0.4 1.8 hypothetical protein compare
Pf6N2E2_2872 +0.4 2.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2571 +0.4 1.1 Chemotaxis response - phosphatase CheZ compare
Pf6N2E2_136 +0.4 0.5 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_890 +0.4 0.8 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) compare
Pf6N2E2_6006 +0.4 0.8 L-rhamnose operon transcriptional activator RhaR compare
Pf6N2E2_847 +0.4 1.6 Phosphoribosyl transferase domain protein compare
Pf6N2E2_4910 +0.4 1.9 FIG003461: hypothetical protein compare
Pf6N2E2_1308 +0.4 0.6 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
Pf6N2E2_2181 +0.4 2.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1232 +0.4 2.1 ABC-type protease exporter, membrane fusion protein (MFP) family component PrtE/AprE compare
Pf6N2E2_2138 +0.3 2.0 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_3969 +0.3 1.7 Membrane-fusion protein compare
Pf6N2E2_463 +0.3 0.8 Transcriptional regulatory protein RstA compare
Pf6N2E2_6061 +0.3 2.5 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_5830 +0.3 0.6 FIG00960829: hypothetical protein compare
Pf6N2E2_1808 +0.3 0.9 Transcriptional regulator compare
Pf6N2E2_3516 +0.3 0.6 Probable transmembrane protein compare
Pf6N2E2_1990 +0.3 1.9 Possible exported protein compare
Pf6N2E2_630 +0.3 0.6 Epimerase KguE compare
Pf6N2E2_1998 +0.3 2.1 FIG01212208: hypothetical protein compare
Pf6N2E2_2489 +0.3 0.9 UPF0028 protein YchK compare
Pf6N2E2_4367 +0.3 1.3 hypothetical protein compare
Pf6N2E2_2405 +0.3 1.3 Hypothetical protein PvdY @ Siderophore synthetase small component, acetyltransferase compare
Pf6N2E2_4263 +0.3 0.7 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_3927 +0.3 2.5 Methionine ABC transporter ATP-binding protein compare
Pf6N2E2_250 +0.3 1.3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Ying_OrganicAcid7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_OrganicAcid7 across organisms