Experiment set24S411 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_AminoAcid20 rep C; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2277 -4.9 -3.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3248 -3.9 -6.6 Probable transmembrane protein compare
Pf6N2E2_3661 -3.4 -17.5 hypothetical protein compare
Pf6N2E2_3645 -3.2 -10.7 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_4473 -3.0 -9.3 HlyD family secretion protein compare
Pf6N2E2_2822 -2.8 -6.5 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2440 -2.7 -1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_2139 -2.6 -3.2 Paraquat-inducible protein A compare
Pf6N2E2_5338 -2.6 -19.9 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4083 -2.6 -3.5 hypothetical protein compare
Pf6N2E2_2753 -2.3 -4.8 HtrA protease/chaperone protein compare
Pf6N2E2_3346 -2.3 -8.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_3240 -2.3 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3782 -2.2 -9.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5337 -2.2 -12.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3687 -2.2 -1.4 FIG00959437: hypothetical protein compare
Pf6N2E2_4471 -2.2 -6.8 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5339 -2.1 -12.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3656 -2.1 -13.3 Probable transcription regulator Mig-14 compare
Pf6N2E2_4472 -2.1 -10.2 ABC-type multidrug transport system, permease component compare
Pf6N2E2_962 -2.0 -1.3 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_3621 -1.9 -7.7 putative transporter, required for glycine utilization (from data) compare
Pf6N2E2_5950 -1.9 -1.8 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_5728 -1.9 -1.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2217 -1.9 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3786 -1.9 -10.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_2318 -1.9 -14.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2561 -1.9 -1.2 FIG00955434: hypothetical protein compare
Pf6N2E2_2071 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_3785 -1.8 -10.2 Twin-arginine translocation protein TatB compare
Pf6N2E2_5455 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_3271 -1.8 -5.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5679 -1.8 -3.3 hypothetical protein compare
Pf6N2E2_3984 -1.7 -11.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5291 -1.7 -13.7 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3659 -1.7 -6.2 Protein fixF compare
Pf6N2E2_4710 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_4990 -1.7 -1.1 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_4075 -1.7 -9.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2487 -1.7 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_2473 -1.7 -0.6 Major outer membrane lipoprotein I compare
Pf6N2E2_4969 -1.6 -0.6 hypothetical protein compare
Pf6N2E2_3763 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_953 -1.6 -1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_70 -1.6 -4.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3667 -1.6 -7.2 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3573 -1.6 -1.0 HupE-UreJ family metal transporter compare
Pf6N2E2_5553 -1.6 -3.9 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_2188 -1.6 -1.5 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_2320 -1.6 -6.4 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3899 -1.6 -9.4 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5242 -1.6 -2.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4779 -1.5 -1.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_4171 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_2474 -1.5 -9.0 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_1246 -1.5 -1.0 FIG00961372: hypothetical protein compare
Pf6N2E2_650 -1.5 -1.0 General secretion pathway protein M compare
Pf6N2E2_6075 -1.5 -1.4 Chromosome segregation ATPases compare
Pf6N2E2_1448 -1.5 -2.1 hypothetical protein compare
Pf6N2E2_4072 -1.5 -7.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2656 -1.5 -1.7 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_5527 -1.5 -2.3 Cold shock protein CspC compare
Pf6N2E2_74 -1.5 -0.9 DedD protein compare
Pf6N2E2_3603 -1.4 -5.4 FIG003573: hypothetical protein compare
Pf6N2E2_5703 -1.4 -1.0 outer membrane protein H1 compare
Pf6N2E2_3323 -1.4 -1.0 hypothetical protein compare
Pf6N2E2_4077 -1.4 -0.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1396 -1.4 -1.4 ABC transporter, ATP-binding protein compare
Pf6N2E2_939 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_405 -1.4 -0.8 hypothetical protein compare
Pf6N2E2_5647 -1.4 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4548 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_4556 -1.4 -0.9 FIG00953078: hypothetical protein compare
Pf6N2E2_2688 -1.4 -1.6 YD repeat protein compare
Pf6N2E2_3942 -1.4 -7.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_6062 -1.4 -2.2 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_101 -1.4 -1.8 CigR (Putative inner membrane protein) compare
Pf6N2E2_3264 -1.4 -8.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5292 -1.3 -6.6 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_5807 -1.3 -1.3 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_1412 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_469 -1.3 -0.8 lipoprotein, putative compare
Pf6N2E2_4187 -1.3 -12.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4070 -1.3 -1.2 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_4451 -1.3 -8.1 FIG139438: lipoprotein B compare
Pf6N2E2_1404 -1.3 -1.2 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_318 -1.3 -0.9 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_4732 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_1959 -1.3 -0.8 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_5153 -1.3 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_6061 -1.3 -8.2 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_1749 -1.3 -1.1 Cyn operon transcriptional activator compare
Pf6N2E2_2282 -1.3 -2.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4159 -1.3 -7.1 Cytochrome c4 compare
Pf6N2E2_472 -1.3 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_2591 -1.3 -0.8 Flagellar assembly protein FliH compare
Pf6N2E2_734 -1.2 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1147 -1.2 -4.0 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_4258 -1.2 -1.2 FIG00953800: hypothetical protein compare
Pf6N2E2_3428 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_3237 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_3569 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_5419 -1.2 -0.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_2778 -1.2 -0.8 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_3014 -1.2 -1.4 P2-like prophage tail protein X compare
Pf6N2E2_1566 -1.2 -2.5 FIG00960770: hypothetical protein compare
Pf6N2E2_4907 -1.2 -7.3 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_2081 -1.2 -0.7 putative exported protein compare
Pf6N2E2_443 -1.2 -0.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_453 -1.2 -0.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2279 -1.2 -1.9 FIG00954981: hypothetical protein compare
Pf6N2E2_2988 -1.2 -1.1 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_5097 -1.2 -0.8 FIG00953595: hypothetical protein compare
Pf6N2E2_942 -1.2 -1.0 Mll6465 protein compare
Pf6N2E2_2849 -1.2 -0.8 Chromosome initiation inhibitor compare
Pf6N2E2_4494 -1.2 -1.1 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_6085 -1.2 -0.7 Aha1 domain superfamily compare
Pf6N2E2_3912 -1.2 -0.8 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_1788 -1.2 -1.1 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_3037 -1.2 -6.9 RNA polymerase sigma factor RpoS compare
Pf6N2E2_5756 -1.2 -0.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2447 -1.2 -5.2 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2041 -1.1 -1.3 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf6N2E2_165 -1.1 -0.7 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_2496 -1.1 -0.9 FIG00956575: hypothetical protein compare
Pf6N2E2_5906 -1.1 -1.0 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_1325 -1.1 -1.6 FIG00954773: hypothetical protein compare
Pf6N2E2_1028 -1.1 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_2317 -1.1 -4.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2752 -1.1 -3.3 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_375 -1.1 -1.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_16 -1.1 -0.4 hypothetical protein compare
Pf6N2E2_3261 -1.1 -8.6 hypothetical protein compare
Pf6N2E2_1705 -1.1 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3221 -1.1 -0.7 FIG00352444: hypothetical protein compare
Pf6N2E2_1715 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_2986 -1.1 -1.0 Transcriptional regulator, LuxR family compare
Pf6N2E2_2795 -1.1 -0.7 putative exported protein compare
Pf6N2E2_1905 -1.1 -1.0 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_3664 -1.1 -6.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5453 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_5428 -1.1 -2.8 DNA recombination and repair protein RecO compare
Pf6N2E2_5111 -1.1 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_1875 -1.1 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_97 -1.1 -1.3 putataive branched-chain amino acid transport protein AzlC compare
Pf6N2E2_5340 -1.1 -7.1 Stringent starvation protein A compare
Pf6N2E2_3655 -1.1 -9.5 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_237 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_3720 -1.1 -0.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1089 -1.1 -0.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_4654 -1.1 -4.1 hypothetical protein compare
Pf6N2E2_2193 -1.1 -3.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_5720 -1.1 -0.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2264 -1.1 -1.2 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4307 -1.1 -1.4 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_2465 -1.1 -2.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_552 -1.1 -0.6 Uncharacterized protein ImpF compare
Pf6N2E2_3810 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3642 -1.1 -1.0 lipoprotein, putative compare
Pf6N2E2_2806 -1.1 -1.0 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_4917 -1.1 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_466 -1.1 -1.0 Nicotinamidase (EC 3.5.1.19) compare
Pf6N2E2_956 -1.1 -0.7 FIG01210404: hypothetical protein compare
Pf6N2E2_2769 -1.1 -1.7 Tricarboxylate transport protein TctB compare
Pf6N2E2_64 -1.1 -2.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_827 -1.1 -1.0 probable dioxygenase compare
Pf6N2E2_4803 -1.1 -2.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5095 -1.1 -1.0 Putative inner membrane protein (Fragment) compare
Pf6N2E2_4761 -1.0 -1.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_3663 -1.0 -7.8 Glycosyl transferase compare
Pf6N2E2_3932 -1.0 -2.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_1981 -1.0 -0.7 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_973 -1.0 -1.5 Single-stranded DNA-binding protein compare
Pf6N2E2_3740 -1.0 -2.2 General secretion pathway protein J compare
Pf6N2E2_5599 -1.0 -0.7 Electron transport complex protein RnfA compare
Pf6N2E2_1352 -1.0 -0.7 Cation transport ATPase compare
Pf6N2E2_2152 -1.0 -0.5 hypothetical protein compare
Pf6N2E2_1885 -1.0 -1.1 Transcriptional regulator, AraC family compare
Pf6N2E2_595 -1.0 -0.7 Arsenical resistance operon repressor compare
Pf6N2E2_5086 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_2552 -1.0 -4.7 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_1893 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_4057 -1.0 -0.4 lipoprotein, putative compare
Pf6N2E2_922 -1.0 -1.7 FIG00794167: hypothetical protein compare
Pf6N2E2_4014 -1.0 -2.2 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_5576 -1.0 -1.3 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_3179 -1.0 -0.9 FIG021952: putative membrane protein compare
Pf6N2E2_4928 -1.0 -0.5 Permeases of the major facilitator superfamily compare
Pf6N2E2_3744 -1.0 -0.6 General secretion pathway protein F compare
Pf6N2E2_4052 -1.0 -0.4 FIG00955481: hypothetical protein compare
Pf6N2E2_5545 -1.0 -0.9 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_2641 -1.0 -3.0 SelT/selW/selH selenoprotein domain compare
Pf6N2E2_499 -1.0 -0.7 Possible pyrimidine permease in reductive pathway compare
Pf6N2E2_5505 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_4678 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_5073 -1.0 -7.4 Large-conductance mechanosensitive channel compare
Pf6N2E2_4733 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_1523 -1.0 -1.4 Universal stress protein family 5 compare
Pf6N2E2_4531 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_4440 -1.0 -1.8 Small-conductance mechanosensitive channel compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Ying_AminoAcid20 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_AminoAcid20 across organisms