Experiment set24S410 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_AminoAcid20 rep B; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2277 -3.9 -3.8 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3665 -3.8 -1.6 serine/threonine protein kinase compare
Pf6N2E2_3248 -3.3 -9.4 Probable transmembrane protein compare
Pf6N2E2_3661 -3.2 -16.9 hypothetical protein compare
Pf6N2E2_3645 -3.1 -11.0 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_2139 -2.8 -2.3 Paraquat-inducible protein A compare
Pf6N2E2_4473 -2.8 -9.6 HlyD family secretion protein compare
Pf6N2E2_2822 -2.7 -7.2 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3171 -2.7 -1.1 hypothetical protein compare
Pf6N2E2_5338 -2.7 -19.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5337 -2.5 -12.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3782 -2.5 -9.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3656 -2.4 -13.2 Probable transcription regulator Mig-14 compare
Pf6N2E2_451 -2.3 -1.5 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4083 -2.3 -2.5 hypothetical protein compare
Pf6N2E2_2753 -2.3 -5.1 HtrA protease/chaperone protein compare
Pf6N2E2_2674 -2.3 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_3240 -2.3 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3785 -2.3 -13.1 Twin-arginine translocation protein TatB compare
Pf6N2E2_4397 -2.3 -2.0 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_3687 -2.2 -1.5 FIG00959437: hypothetical protein compare
Pf6N2E2_5339 -2.2 -14.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3786 -2.2 -8.4 Twin-arginine translocation protein TatC compare
Pf6N2E2_2675 -2.1 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2656 -2.1 -1.4 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_4307 -2.1 -1.9 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_4471 -2.1 -5.8 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5505 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_1435 -2.0 -1.9 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_2320 -2.0 -12.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3346 -1.9 -7.5 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2318 -1.9 -16.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5950 -1.9 -1.8 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3667 -1.9 -8.3 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4472 -1.9 -9.5 ABC-type multidrug transport system, permease component compare
Pf6N2E2_1147 -1.9 -4.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_5455 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_5622 -1.8 -1.2 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_2071 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_5153 -1.8 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_1031 -1.8 -1.7 Alkanesulfonates transport system permease protein compare
Pf6N2E2_5527 -1.8 -2.4 Cold shock protein CspC compare
Pf6N2E2_3659 -1.8 -7.0 Protein fixF compare
Pf6N2E2_1749 -1.8 -1.2 Cyn operon transcriptional activator compare
Pf6N2E2_3899 -1.8 -11.4 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_4710 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_2217 -1.7 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_6035 -1.7 -1.1 alpha/beta hydrolase fold compare
Pf6N2E2_5242 -1.7 -2.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3984 -1.7 -11.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2487 -1.7 -0.7 FIG00956090: hypothetical protein compare
Pf6N2E2_339 -1.7 -1.1 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_4969 -1.6 -0.6 hypothetical protein compare
Pf6N2E2_5647 -1.6 -3.2 Transcriptional regulator, TetR family compare
Pf6N2E2_3763 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_953 -1.6 -1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_3573 -1.6 -1.0 HupE-UreJ family metal transporter compare
Pf6N2E2_5679 -1.6 -2.8 hypothetical protein compare
Pf6N2E2_3621 -1.5 -7.3 putative transporter, required for glycine utilization (from data) compare
Pf6N2E2_2317 -1.5 -5.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4072 -1.5 -7.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_1246 -1.5 -1.0 FIG00961372: hypothetical protein compare
Pf6N2E2_5728 -1.5 -1.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2474 -1.5 -8.9 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2552 -1.5 -6.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4658 -1.5 -2.5 FIG00955006: hypothetical protein compare
Pf6N2E2_94 -1.4 -1.4 Cyn operon transcriptional activator compare
Pf6N2E2_74 -1.4 -0.9 DedD protein compare
Pf6N2E2_5291 -1.4 -12.0 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_405 -1.4 -0.8 hypothetical protein compare
Pf6N2E2_1639 -1.4 -2.8 ABC-type phosphate transport system, periplasmic component compare
Pf6N2E2_3603 -1.4 -5.4 FIG003573: hypothetical protein compare
Pf6N2E2_4494 -1.4 -1.0 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_2582 -1.4 -1.3 Flagellar motor switch protein FliN compare
Pf6N2E2_6062 -1.4 -2.0 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_4779 -1.4 -1.8 Transcriptional regulator, AsnC family compare
Pf6N2E2_469 -1.4 -0.9 lipoprotein, putative compare
Pf6N2E2_2324 -1.4 -2.0 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_4075 -1.4 -7.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_1412 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_1526 -1.3 -1.5 MgtC family compare
Pf6N2E2_2246 -1.3 -0.9 Arabinose efflux permease compare
Pf6N2E2_3591 -1.3 -1.2 NUDIX hydrolase compare
Pf6N2E2_70 -1.3 -4.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3261 -1.3 -9.7 hypothetical protein compare
Pf6N2E2_5806 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_472 -1.3 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_4732 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_4181 -1.3 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_2064 -1.3 -0.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3264 -1.3 -4.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_1959 -1.3 -0.8 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_318 -1.3 -0.8 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_1635 -1.3 -1.7 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_3663 -1.3 -7.3 Glycosyl transferase compare
Pf6N2E2_4451 -1.3 -6.1 FIG139438: lipoprotein B compare
Pf6N2E2_5496 -1.3 -0.8 FIG00953991: hypothetical protein compare
Pf6N2E2_3664 -1.3 -6.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_6082 -1.3 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_734 -1.3 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5419 -1.3 -0.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_1490 -1.3 -1.1 hypothetical protein compare
Pf6N2E2_2440 -1.3 -0.7 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_962 -1.2 -1.0 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_650 -1.2 -1.1 General secretion pathway protein M compare
Pf6N2E2_665 -1.2 -1.4 Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-) compare
Pf6N2E2_443 -1.2 -0.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_453 -1.2 -0.8 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_3655 -1.2 -11.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3748 -1.2 -1.6 Cytochrome B561 compare
Pf6N2E2_4187 -1.2 -11.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_6061 -1.2 -9.1 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_2849 -1.2 -0.8 Chromosome initiation inhibitor compare
Pf6N2E2_1671 -1.2 -1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_5292 -1.2 -6.0 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_114 -1.2 -1.5 Polysaccharide biosynthesis protein compare
Pf6N2E2_500 -1.2 -1.5 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_3198 -1.2 -0.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_942 -1.2 -1.1 Mll6465 protein compare
Pf6N2E2_2752 -1.2 -3.3 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5553 -1.2 -3.7 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_2850 -1.2 -2.0 Transporter, LysE family compare
Pf6N2E2_6085 -1.2 -0.7 Aha1 domain superfamily compare
Pf6N2E2_1082 -1.2 -1.3 CopG protein compare
Pf6N2E2_4654 -1.2 -4.4 hypothetical protein compare
Pf6N2E2_2855 -1.2 -1.1 DGPFAETKE compare
Pf6N2E2_3942 -1.2 -6.5 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_1028 -1.2 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_4907 -1.2 -7.0 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_1705 -1.1 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4258 -1.1 -1.3 FIG00953800: hypothetical protein compare
Pf6N2E2_1905 -1.1 -1.0 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_3810 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3221 -1.1 -0.7 FIG00352444: hypothetical protein compare
Pf6N2E2_1035 -1.1 -1.0 MotA/TolQ/ExbB proton channel family protein compare
Pf6N2E2_1875 -1.1 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2188 -1.1 -1.4 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_2806 -1.1 -1.0 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_2360 -1.1 -1.3 cell invasion protein SipB compare
Pf6N2E2_5111 -1.1 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_3658 -1.1 -9.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_165 -1.1 -0.7 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_3271 -1.1 -4.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4159 -1.1 -7.1 Cytochrome c4 compare
Pf6N2E2_3720 -1.1 -0.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1089 -1.1 -0.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_552 -1.1 -0.7 Uncharacterized protein ImpF compare
Pf6N2E2_5340 -1.1 -8.2 Stringent starvation protein A compare
Pf6N2E2_2988 -1.1 -1.2 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_4014 -1.1 -2.2 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_3982 -1.1 -1.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_237 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_3737 -1.1 -0.6 General secretion pathway protein M compare
Pf6N2E2_55 -1.1 -0.7 Probable hydrolase compare
Pf6N2E2_402 -1.1 -1.4 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_5517 -1.1 -1.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_5921 -1.1 -1.5 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf6N2E2_5720 -1.1 -0.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3521 -1.1 -5.8 Sensor histidine kinase/response regulator compare
Pf6N2E2_64 -1.1 -2.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_1448 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_2282 -1.0 -2.5 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_595 -1.0 -0.7 Arsenical resistance operon repressor compare
Pf6N2E2_4506 -1.0 -1.0 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_1981 -1.0 -0.7 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4448 -1.0 -0.7 probable P23 protein compare
Pf6N2E2_1626 -1.0 -3.5 Putative ATP-binding component of a transport system compare
Pf6N2E2_2218 -1.0 -0.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5599 -1.0 -0.7 Electron transport complex protein RnfA compare
Pf6N2E2_3610 -1.0 -2.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3853 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_4171 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_4928 -1.0 -0.6 Permeases of the major facilitator superfamily compare
Pf6N2E2_3744 -1.0 -0.6 General secretion pathway protein F compare
Pf6N2E2_4458 -1.0 -1.2 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_4052 -1.0 -0.4 FIG00955481: hypothetical protein compare
Pf6N2E2_1424 -1.0 -0.9 transcriptional regulator, TetR family compare
Pf6N2E2_3179 -1.0 -0.9 FIG021952: putative membrane protein compare
Pf6N2E2_4534 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_4057 -1.0 -0.4 lipoprotein, putative compare
Pf6N2E2_4733 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_4918 -1.0 -1.4 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_4672 -1.0 -1.4 FIG00953568: hypothetical protein compare
Pf6N2E2_3702 -1.0 -0.9 FIG00953907: hypothetical protein compare
Pf6N2E2_3138 -1.0 -2.9 YaeQ protein compare
Pf6N2E2_4631 -1.0 -1.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_5073 -1.0 -7.5 Large-conductance mechanosensitive channel compare
Pf6N2E2_4699 -1.0 -1.7 FIG00953563: hypothetical protein compare
Pf6N2E2_5024 -1.0 -0.9 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_4614 -1.0 -0.9 twitching motility protein PilH compare
Pf6N2E2_4531 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_3384 -1.0 -1.5 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_5049 -1.0 -0.6 acetyltransferase, GNAT family compare
Pf6N2E2_1743 -1.0 -1.0 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_3852 -1.0 -1.2 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Pf6N2E2_6022 -1.0 -0.6 StbE replicon stabilization toxin compare
Pf6N2E2_499 -1.0 -0.9 Possible pyrimidine permease in reductive pathway compare
Pf6N2E2_5234 -1.0 -2.1 Uracil permease compare
Pf6N2E2_4502 -1.0 -1.7 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1203 -1.0 -0.6 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Ying_AminoAcid20 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_AminoAcid20 across organisms