Experiment set24S409 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_AminoAcid20 rep A; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2277 -4.9 -3.3 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_3661 -3.3 -13.4 hypothetical protein compare
Pf6N2E2_3645 -3.1 -10.9 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_3656 -3.0 -17.6 Probable transcription regulator Mig-14 compare
Pf6N2E2_3248 -2.8 -7.7 Probable transmembrane protein compare
Pf6N2E2_4473 -2.8 -7.8 HlyD family secretion protein compare
Pf6N2E2_3782 -2.7 -7.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3171 -2.7 -1.1 hypothetical protein compare
Pf6N2E2_2753 -2.6 -3.0 HtrA protease/chaperone protein compare
Pf6N2E2_2139 -2.4 -3.3 Paraquat-inducible protein A compare
Pf6N2E2_5338 -2.3 -17.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_1147 -2.3 -3.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_5337 -2.3 -11.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2822 -2.3 -6.7 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3665 -2.3 -1.3 serine/threonine protein kinase compare
Pf6N2E2_3659 -2.2 -7.2 Protein fixF compare
Pf6N2E2_2318 -2.2 -17.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4601 -2.2 -1.5 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3240 -2.2 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2320 -2.2 -9.5 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5679 -2.2 -4.4 hypothetical protein compare
Pf6N2E2_3687 -2.2 -1.4 FIG00959437: hypothetical protein compare
Pf6N2E2_1490 -2.1 -1.4 hypothetical protein compare
Pf6N2E2_3663 -2.0 -10.4 Glycosyl transferase compare
Pf6N2E2_4471 -2.0 -5.5 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5339 -2.0 -12.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_6099 -1.9 -0.8 tRNA-Glu-TTC compare
Pf6N2E2_4797 -1.9 -3.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3667 -1.9 -8.0 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4472 -1.9 -9.1 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5950 -1.9 -1.3 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3088 -1.8 -1.0 hypothetical protein compare
Pf6N2E2_5455 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_2561 -1.8 -1.2 FIG00955434: hypothetical protein compare
Pf6N2E2_5622 -1.8 -1.2 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_5242 -1.8 -2.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5153 -1.8 -5.5 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_3786 -1.8 -7.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_3346 -1.8 -7.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2071 -1.8 -1.1 hypothetical protein compare
Pf6N2E2_5576 -1.7 -1.6 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_1735 -1.7 -1.8 PhnB protein compare
Pf6N2E2_4990 -1.7 -1.1 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_4710 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_2080 -1.7 -1.0 hypothetical protein compare
Pf6N2E2_4451 -1.7 -8.3 FIG139438: lipoprotein B compare
Pf6N2E2_178 -1.7 -0.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4145 -1.7 -1.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_3015 -1.7 -1.5 hypothetical protein compare
Pf6N2E2_3655 -1.7 -13.5 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4969 -1.6 -0.6 hypothetical protein compare
Pf6N2E2_5647 -1.6 -2.8 Transcriptional regulator, TetR family compare
Pf6N2E2_3621 -1.6 -6.9 putative transporter, required for glycine utilization (from data) compare
Pf6N2E2_2473 -1.6 -0.6 Major outer membrane lipoprotein I compare
Pf6N2E2_3573 -1.6 -1.0 HupE-UreJ family metal transporter compare
Pf6N2E2_3664 -1.6 -7.4 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2487 -1.6 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_4075 -1.6 -8.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3899 -1.6 -9.5 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_3763 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_3984 -1.6 -10.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5291 -1.6 -12.6 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_5761 -1.5 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_953 -1.5 -1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_5728 -1.5 -1.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2636 -1.5 -1.0 FIG027190: Putative transmembrane protein compare
Pf6N2E2_4762 -1.5 -1.0 Biotin synthesis protein BioH compare
Pf6N2E2_5527 -1.5 -2.1 Cold shock protein CspC compare
Pf6N2E2_3261 -1.5 -11.6 hypothetical protein compare
Pf6N2E2_5024 -1.5 -1.0 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_2217 -1.5 -1.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2168 -1.5 -1.0 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf6N2E2_2986 -1.5 -1.0 Transcriptional regulator, LuxR family compare
Pf6N2E2_5292 -1.4 -6.7 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_2300 -1.4 -1.9 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_4494 -1.4 -1.0 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_3603 -1.4 -5.4 FIG003573: hypothetical protein compare
Pf6N2E2_2317 -1.4 -5.4 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3658 -1.4 -11.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_1246 -1.4 -0.9 FIG00961372: hypothetical protein compare
Pf6N2E2_3885 -1.4 -1.3 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_3179 -1.4 -0.9 FIG021952: putative membrane protein compare
Pf6N2E2_74 -1.4 -0.9 DedD protein compare
Pf6N2E2_332 -1.4 -1.6 putative nucleoside-diphosphate-sugar epimerase compare
Pf6N2E2_4072 -1.4 -7.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4077 -1.4 -0.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4187 -1.4 -11.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_295 -1.4 -0.9 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_2919 -1.4 -1.3 FIG00955830: hypothetical protein compare
Pf6N2E2_3785 -1.4 -6.3 Twin-arginine translocation protein TatB compare
Pf6N2E2_2041 -1.3 -1.7 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf6N2E2_1424 -1.3 -1.0 transcriptional regulator, TetR family compare
Pf6N2E2_1671 -1.3 -0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_3516 -1.3 -1.7 Probable transmembrane protein compare
Pf6N2E2_6061 -1.3 -9.4 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
Pf6N2E2_795 -1.3 -1.2 ABC transporter ATP-binding protein uup compare
Pf6N2E2_719 -1.3 -0.7 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_2018 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_4159 -1.3 -6.5 Cytochrome c4 compare
Pf6N2E2_3825 -1.3 -1.5 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_4732 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_1258 -1.3 -0.8 FIG00960119: hypothetical protein compare
Pf6N2E2_1959 -1.3 -0.8 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_5807 -1.3 -1.2 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_4181 -1.3 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_3521 -1.3 -6.3 Sensor histidine kinase/response regulator compare
Pf6N2E2_4907 -1.3 -7.0 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf6N2E2_2527 -1.3 -7.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3942 -1.3 -6.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_1207 -1.2 -1.6 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_217 -1.2 -1.2 Signal transduction histidine kinase compare
Pf6N2E2_2552 -1.2 -5.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3312 -1.2 -1.4 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_472 -1.2 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_2778 -1.2 -0.8 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_5705 -1.2 -7.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1759 -1.2 -1.1 uncharacterized domain 1 compare
Pf6N2E2_5419 -1.2 -0.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_4083 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_4258 -1.2 -1.2 FIG00953800: hypothetical protein compare
Pf6N2E2_1749 -1.2 -1.1 Cyn operon transcriptional activator compare
Pf6N2E2_2716 -1.2 -1.4 FIG00954793: hypothetical protein compare
Pf6N2E2_1747 -1.2 -0.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5366 -1.2 -1.4 DNA-binding heavy metal response regulator compare
Pf6N2E2_734 -1.2 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_2849 -1.2 -0.8 Chromosome initiation inhibitor compare
Pf6N2E2_1506 -1.2 -1.1 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_712 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_4306 -1.2 -2.1 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_2988 -1.2 -1.1 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_3486 -1.2 -1.9 FIG00953575: hypothetical protein compare
Pf6N2E2_6085 -1.2 -0.7 Aha1 domain superfamily compare
Pf6N2E2_453 -1.2 -0.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_1834 -1.2 -1.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_5517 -1.2 -0.8 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_425 -1.2 -1.1 FIG00957304: hypothetical protein compare
Pf6N2E2_736 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_2474 -1.1 -7.0 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_1 -1.1 -1.3 Trans-aconitate 2-methyltransferase (EC 2.1.1.144) compare
Pf6N2E2_962 -1.1 -0.9 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_3569 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_3014 -1.1 -1.3 P2-like prophage tail protein X compare
Pf6N2E2_4761 -1.1 -0.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5910 -1.1 -1.3 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_4556 -1.1 -1.0 FIG00953078: hypothetical protein compare
Pf6N2E2_4458 -1.1 -1.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_4171 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_5756 -1.1 -0.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2282 -1.1 -2.5 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5111 -1.1 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_465 -1.1 -1.5 Probable transmembrane protein compare
Pf6N2E2_3612 -1.1 -1.0 HflK protein compare
Pf6N2E2_165 -1.1 -0.7 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_2633 -1.1 -0.7 Nitroreductase family protein compare
Pf6N2E2_3221 -1.1 -0.7 FIG00352444: hypothetical protein compare
Pf6N2E2_942 -1.1 -1.0 Mll6465 protein compare
Pf6N2E2_1875 -1.1 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_1905 -1.1 -1.0 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_3531 -1.1 -1.9 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5553 -1.1 -3.2 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_2806 -1.1 -1.0 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_1028 -1.1 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_237 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_4448 -1.1 -0.7 probable P23 protein compare
Pf6N2E2_2752 -1.1 -3.3 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_617 -1.1 -1.6 Probable glutathione S-transferase compare
Pf6N2E2_3720 -1.1 -0.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_99 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_848 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_3810 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3932 -1.1 -2.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3852 -1.1 -1.0 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Pf6N2E2_1705 -1.1 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2324 -1.1 -1.5 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_1526 -1.1 -1.4 MgtC family compare
Pf6N2E2_5720 -1.0 -0.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4700 -1.0 -1.0 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_193 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_3758 -1.0 -1.2 Type IV pilus biogenesis protein PilO compare
Pf6N2E2_4928 -1.0 -0.6 Permeases of the major facilitator superfamily compare
Pf6N2E2_5086 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_1981 -1.0 -0.7 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2207 -1.0 -2.0 cytochrome b(561) compare
Pf6N2E2_1089 -1.0 -0.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1715 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_2196 -1.0 -1.6 FIG00953347: hypothetical protein compare
Pf6N2E2_552 -1.0 -0.6 Uncharacterized protein ImpF compare
Pf6N2E2_5784 -1.0 -1.6 FIG01073969: hypothetical protein compare
Pf6N2E2_4733 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_1082 -1.0 -1.1 CopG protein compare
Pf6N2E2_5599 -1.0 -0.6 Electron transport complex protein RnfA compare
Pf6N2E2_4372 -1.0 -1.6 FIG00460773: hypothetical protein compare
Pf6N2E2_2571 -1.0 -2.1 Chemotaxis response - phosphatase CheZ compare
Pf6N2E2_827 -1.0 -0.9 probable dioxygenase compare
Pf6N2E2_4163 -1.0 -1.4 FIG00953549: hypothetical protein compare
Pf6N2E2_1625 -1.0 -0.7 Ferric reductase (1.6.99.14) compare
Pf6N2E2_4631 -1.0 -1.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_1953 -1.0 -3.4 Uncharacterized conserved protein compare
Pf6N2E2_3271 -1.0 -3.2 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4502 -1.0 -1.7 FMN reductase (EC 1.5.1.29) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Ying_AminoAcid20 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_AminoAcid20 across organisms