Experiment set24S408 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_sugar7 rep C; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -6.4 -4.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2074 -4.4 -2.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3783 -4.4 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_71 -2.5 -1.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3661 -2.4 -11.5 hypothetical protein compare
Pf6N2E2_3940 -2.3 -2.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5073 -2.3 -3.5 Large-conductance mechanosensitive channel compare
Pf6N2E2_3842 -2.2 -1.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2509 -2.2 -2.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3248 -2.1 -4.4 Probable transmembrane protein compare
Pf6N2E2_2440 -2.1 -1.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_3134 -2.0 -0.9 hypothetical protein compare
Pf6N2E2_4810 -2.0 -8.3 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_3171 -1.9 -0.9 hypothetical protein compare
Pf6N2E2_63 -1.9 -1.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5338 -1.9 -14.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3630 -1.8 -2.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_942 -1.8 -1.2 Mll6465 protein compare
Pf6N2E2_806 -1.8 -3.5 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_2822 -1.8 -4.6 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3251 -1.8 -3.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2253 -1.7 -3.1 hypothetical protein compare
Pf6N2E2_2753 -1.7 -2.0 HtrA protease/chaperone protein compare
Pf6N2E2_3659 -1.7 -5.9 Protein fixF compare
Pf6N2E2_3658 -1.7 -8.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3645 -1.7 -7.6 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_64 -1.7 -1.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3610 -1.7 -1.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5242 -1.7 -1.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5862 -1.7 -0.9 Lipoprotein, putative compare
Pf6N2E2_4279 -1.6 -6.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2674 -1.6 -0.7 FIG00953856: hypothetical protein compare
Pf6N2E2_4473 -1.6 -6.6 HlyD family secretion protein compare
Pf6N2E2_5339 -1.6 -10.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5177 -1.6 -1.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_5337 -1.6 -8.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5647 -1.5 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_77 -1.5 -1.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2117 -1.5 -4.6 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_3003 -1.5 -1.0 Bacteriophage protein GP46 compare
Pf6N2E2_2496 -1.5 -1.0 FIG00956575: hypothetical protein compare
Pf6N2E2_515 -1.5 -5.5 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
Pf6N2E2_3240 -1.5 -0.7 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3252 -1.5 -1.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2320 -1.5 -6.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2675 -1.4 -0.6 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3727 -1.4 -0.9 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_451 -1.4 -0.9 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_1916 -1.4 -0.9 Transcriptional regulator, LysR family compare
Pf6N2E2_4826 -1.4 -1.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_50 -1.4 -3.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_1490 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_70 -1.4 -3.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2508 -1.4 -1.8 hypothetical protein compare
Pf6N2E2_3984 -1.3 -6.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3170 -1.3 -5.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_66 -1.3 -0.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5257 -1.3 -4.3 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2885 -1.3 -2.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_6100 -1.3 -0.7 tRNA-Val-TAC compare
Pf6N2E2_2139 -1.3 -2.4 Paraquat-inducible protein A compare
Pf6N2E2_2318 -1.3 -10.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_6099 -1.3 -0.6 tRNA-Glu-TTC compare
Pf6N2E2_1735 -1.2 -1.4 PhnB protein compare
Pf6N2E2_4277 -1.2 -5.7 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2073 -1.2 -2.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2296 -1.2 -0.8 FIG00954767: hypothetical protein compare
Pf6N2E2_1709 -1.2 -0.8 multidrug resistance transporter, Bcr/CflA family compare
Pf6N2E2_3752 -1.2 -4.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4048 -1.2 -0.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_523 -1.2 -6.5 Inositol transport system ATP-binding protein compare
Pf6N2E2_1396 -1.2 -0.7 ABC transporter, ATP-binding protein compare
Pf6N2E2_2217 -1.2 -0.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_302 -1.2 -1.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_1652 -1.2 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2552 -1.2 -3.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4145 -1.2 -0.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_665 -1.1 -0.8 Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-) compare
Pf6N2E2_518 -1.1 -4.7 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf6N2E2_809 -1.1 -3.4 Various polyols ABC transporter, permease component 1 compare
Pf6N2E2_2317 -1.1 -4.4 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4803 -1.1 -1.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1759 -1.1 -0.8 uncharacterized domain 1 compare
Pf6N2E2_2088 -1.1 -0.7 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2897 -1.1 -1.5 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_5554 -1.1 -4.2 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_4278 -1.1 -4.7 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5030 -1.1 -4.1 Transcriptional regulator, AsnC family compare
Pf6N2E2_524 -1.1 -4.1 Inositol transport system permease protein compare
Pf6N2E2_5576 -1.1 -0.7 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_2473 -1.1 -0.5 Major outer membrane lipoprotein I compare
Pf6N2E2_2487 -1.1 -0.5 FIG00956090: hypothetical protein compare
Pf6N2E2_773 -1.1 -3.3 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_3841 -1.1 -1.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3687 -1.1 -0.7 FIG00959437: hypothetical protein compare
Pf6N2E2_1199 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_4472 -1.1 -5.4 ABC-type multidrug transport system, permease component compare
Pf6N2E2_500 -1.1 -0.7 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_512 -1.0 -5.2 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
Pf6N2E2_521 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_1650 -1.0 -2.2 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_178 -1.0 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3751 -1.0 -2.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3820 -1.0 -3.3 hypothetical protein compare
Pf6N2E2_4541 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_2518 -1.0 -1.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_2447 -1.0 -2.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3901 -1.0 -0.9 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_4424 -1.0 -1.0 Regulator of nucleoside diphosphate kinase compare
Pf6N2E2_4417 -1.0 -2.7 Protein of unknown function DUF484 compare
Pf6N2E2_3664 -1.0 -6.5 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_156 -1.0 -1.0 Carbon storage regulator compare
Pf6N2E2_1857 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_2446 -1.0 -2.9 Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_4471 -1.0 -3.5 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5679 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_1834 -1.0 -0.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4147 -1.0 -1.8 Fused spore maturation proteins A and B compare
Pf6N2E2_1345 -1.0 -0.7 NADH:flavin oxidoreductases, Old Yellow Enzyme family compare
Pf6N2E2_4351 -1.0 -6.3 Predicted signal transduction protein compare
Pf6N2E2_2223 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_1997 -0.9 -0.6 FIG00956406: hypothetical protein compare
Pf6N2E2_2071 -0.9 -0.6 hypothetical protein compare
Pf6N2E2_3942 -0.9 -2.9 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3785 -0.9 -4.9 Twin-arginine translocation protein TatB compare
Pf6N2E2_1749 -0.9 -0.6 Cyn operon transcriptional activator compare
Pf6N2E2_723 -0.9 -2.8 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_2561 -0.9 -0.6 FIG00955434: hypothetical protein compare
Pf6N2E2_522 -0.9 -2.3 Inositol transport system sugar-binding protein compare
Pf6N2E2_4596 -0.9 -0.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4097 -0.9 -5.6 FIG00953365: hypothetical protein compare
Pf6N2E2_3952 -0.9 -1.4 putative RecF protein compare
Pf6N2E2_426 -0.9 -0.9 Arsenate reductase (EC 1.20.4.1) compare
Pf6N2E2_5910 -0.9 -0.6 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_3138 -0.9 -2.0 YaeQ protein compare
Pf6N2E2_2965 -0.9 -0.6 FIG00955308: hypothetical protein compare
Pf6N2E2_5258 -0.9 -1.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_958 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_2476 -0.9 -1.0 Arylesterase precursor (EC 3.1.1.2) compare
Pf6N2E2_2121 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_4504 -0.9 -2.0 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf6N2E2_2012 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_4564 -0.9 -2.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5899 -0.9 -1.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_514 -0.9 -2.7 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
Pf6N2E2_51 -0.9 -5.1 hypothetical protein compare
Pf6N2E2_3786 -0.9 -2.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_1223 -0.9 -0.6 Amino acid transporters compare
Pf6N2E2_65 -0.9 -2.5 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf6N2E2_2620 -0.9 -3.7 O-antigen biosynthesis protein compare
Pf6N2E2_4454 -0.9 -2.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_516 -0.9 -2.2 Inosose isomerase (EC 5.3.99.-) compare
Pf6N2E2_3839 -0.9 -0.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2118 -0.9 -6.5 Trehalose synthase (EC 5.4.99.16) compare
Pf6N2E2_3853 -0.9 -0.6 hypothetical protein compare
Pf6N2E2_5609 -0.9 -3.7 DNA-binding response regulator ColR compare
Pf6N2E2_3271 -0.8 -2.8 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_2656 -0.8 -0.8 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_5622 -0.8 -0.5 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_4969 -0.8 -0.4 hypothetical protein compare
Pf6N2E2_5593 -0.8 -1.0 Leucyl-tRNA synthetase compare
Pf6N2E2_4682 -0.8 -1.0 ABC transporter for Carnitine, permease component (from data) compare
Pf6N2E2_189 -0.8 -0.9 regulatory protein, putative compare
Pf6N2E2_1526 -0.8 -0.6 MgtC family compare
Pf6N2E2_2146 -0.8 -1.2 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf6N2E2_3253 -0.8 -0.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2092 -0.8 -1.4 Cytochrome c5 compare
Pf6N2E2_1238 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_5767 -0.8 -2.3 Sodium-dependent transporter compare
Pf6N2E2_6075 -0.8 -0.5 Chromosome segregation ATPases compare
Pf6N2E2_719 -0.8 -0.5 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_5455 -0.8 -0.5 hypothetical protein compare
Pf6N2E2_1452 -0.8 -0.5 hypothetical protein compare
Pf6N2E2_1341 -0.8 -0.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_1935 -0.8 -0.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4841 -0.8 -2.5 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) compare
Pf6N2E2_939 -0.8 -0.8 hypothetical protein compare
Pf6N2E2_1101 -0.8 -1.1 Transporter, LysE family compare
Pf6N2E2_3770 -0.8 -1.2 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_953 -0.8 -0.5 FIG00958851: hypothetical protein compare
Pf6N2E2_5020 -0.8 -0.9 FIG00955339: hypothetical protein compare
Pf6N2E2_4914 -0.8 -0.7 FIG00954755: hypothetical protein compare
Pf6N2E2_2120 -0.8 -3.3 Alpha-amylase (EC 3.2.1.1) compare
Pf6N2E2_4353 -0.8 -3.5 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_1870 -0.8 -0.7 hypothetical protein compare
Pf6N2E2_4825 -0.8 -0.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_5623 -0.8 -2.8 YciL protein compare
Pf6N2E2_2309 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_669 -0.8 -0.5 Nuclease inhibitor compare
Pf6N2E2_671 -0.8 -0.5 2-methylaconitate racemase compare
Pf6N2E2_339 -0.8 -0.5 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_5666 -0.8 -0.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5807 -0.8 -0.5 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_1715 -0.8 -0.5 hypothetical protein compare
Pf6N2E2_2258 -0.8 -0.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2926 -0.8 -2.1 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 2 LivF (from data) compare
Pf6N2E2_439 -0.7 -2.2 FIG00958580: hypothetical protein compare
Pf6N2E2_805 -0.7 -3.0 Xylulose kinase (EC 2.7.1.17) (from data) compare
Pf6N2E2_3426 -0.7 -0.9 Peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_5613 -0.7 -0.5 FIG00953674: hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Ying_sugar7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_sugar7 across organisms