Experiment set24S407 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_sugar7 rep B; time point 2

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -6.5 -4.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -5.6 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -3.9 -3.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_613 -3.2 -1.5 lipoprotein, putative compare
Pf6N2E2_3248 -3.2 -6.5 Probable transmembrane protein compare
Pf6N2E2_160 -2.9 -2.0 hypothetical protein compare
Pf6N2E2_3661 -2.7 -12.5 hypothetical protein compare
Pf6N2E2_2080 -2.6 -1.2 hypothetical protein compare
Pf6N2E2_5073 -2.4 -3.5 Large-conductance mechanosensitive channel compare
Pf6N2E2_71 -2.3 -2.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2509 -2.3 -2.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3842 -2.2 -1.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4810 -2.1 -9.1 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_5338 -2.1 -15.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2324 -2.0 -1.4 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_2440 -2.0 -0.9 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_3940 -2.0 -3.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3171 -1.9 -0.9 hypothetical protein compare
Pf6N2E2_3658 -1.9 -8.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2253 -1.9 -1.9 hypothetical protein compare
Pf6N2E2_1834 -1.8 -1.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_63 -1.7 -1.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3630 -1.7 -1.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2753 -1.7 -2.1 HtrA protease/chaperone protein compare
Pf6N2E2_5337 -1.7 -11.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3251 -1.7 -2.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5237 -1.7 -1.1 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_4473 -1.7 -7.3 HlyD family secretion protein compare
Pf6N2E2_64 -1.7 -1.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5339 -1.6 -9.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_1885 -1.6 -1.1 Transcriptional regulator, AraC family compare
Pf6N2E2_1424 -1.6 -0.8 transcriptional regulator, TetR family compare
Pf6N2E2_3569 -1.6 -1.9 hypothetical protein compare
Pf6N2E2_2674 -1.6 -0.7 FIG00953856: hypothetical protein compare
Pf6N2E2_1435 -1.6 -1.1 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_3645 -1.6 -7.4 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_4307 -1.6 -1.1 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_5177 -1.5 -1.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4279 -1.5 -7.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3786 -1.5 -7.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_3659 -1.5 -4.8 Protein fixF compare
Pf6N2E2_3240 -1.5 -0.7 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_515 -1.5 -5.7 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
Pf6N2E2_77 -1.5 -1.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2117 -1.5 -5.2 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_5030 -1.5 -5.0 Transcriptional regulator, AsnC family compare
Pf6N2E2_3252 -1.4 -1.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_806 -1.4 -3.4 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_2675 -1.4 -0.6 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3665 -1.4 -0.9 serine/threonine protein kinase compare
Pf6N2E2_50 -1.4 -3.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4476 -1.4 -4.5 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_3984 -1.4 -6.7 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3610 -1.4 -1.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_733 -1.4 -2.0 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_1566 -1.4 -2.2 FIG00960770: hypothetical protein compare
Pf6N2E2_3942 -1.4 -4.6 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2842 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_2897 -1.3 -2.4 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_2320 -1.3 -5.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_451 -1.3 -0.9 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_6099 -1.3 -0.6 tRNA-Glu-TTC compare
Pf6N2E2_2318 -1.3 -10.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2552 -1.3 -4.6 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2073 -1.3 -3.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_66 -1.3 -0.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4471 -1.3 -3.5 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5712 -1.3 -1.7 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_3015 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_809 -1.2 -3.8 Various polyols ABC transporter, permease component 1 compare
Pf6N2E2_4826 -1.2 -0.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_1279 -1.2 -0.8 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_2518 -1.2 -2.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_516 -1.2 -2.9 Inosose isomerase (EC 5.3.99.-) compare
Pf6N2E2_5453 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_5258 -1.2 -1.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3752 -1.2 -4.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_523 -1.2 -6.4 Inositol transport system ATP-binding protein compare
Pf6N2E2_4083 -1.2 -2.1 hypothetical protein compare
Pf6N2E2_1448 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_374 -1.2 -1.8 FIG00953249: hypothetical protein compare
Pf6N2E2_4601 -1.2 -0.8 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5264 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_2822 -1.2 -3.7 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_423 -1.2 -1.1 Putative phosphatase YfbT compare
Pf6N2E2_1613 -1.2 -2.1 short-chain dehydrogenase/reductase compare
Pf6N2E2_4048 -1.2 -0.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3841 -1.2 -0.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2571 -1.2 -1.4 Chemotaxis response - phosphatase CheZ compare
Pf6N2E2_822 -1.2 -4.1 TPR domain protein compare
Pf6N2E2_2139 -1.2 -2.3 Paraquat-inducible protein A compare
Pf6N2E2_4277 -1.2 -5.9 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_521 -1.1 -2.4 hypothetical protein compare
Pf6N2E2_4988 -1.1 -1.8 Antiholin-like protein LrgA compare
Pf6N2E2_344 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_4548 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2277 -1.1 -2.0 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_178 -1.1 -0.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5679 -1.1 -2.4 hypothetical protein compare
Pf6N2E2_88 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_2296 -1.1 -0.7 FIG00954767: hypothetical protein compare
Pf6N2E2_4803 -1.1 -1.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4059 -1.1 -0.5 DNA-binding protein HU-alpha compare
Pf6N2E2_2508 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_2217 -1.1 -0.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3687 -1.1 -0.7 FIG00959437: hypothetical protein compare
Pf6N2E2_5576 -1.1 -0.7 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_2549 -1.1 -0.6 hypothetical protein compare
Pf6N2E2_4351 -1.1 -7.5 Predicted signal transduction protein compare
Pf6N2E2_5647 -1.1 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2656 -1.1 -0.7 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_1450 -1.1 -3.0 FIG00960438: hypothetical protein compare
Pf6N2E2_1696 -1.1 -1.2 Alkanesulfonates-binding protein compare
Pf6N2E2_1652 -1.0 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_2487 -1.0 -0.4 FIG00956090: hypothetical protein compare
Pf6N2E2_5899 -1.0 -1.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3033 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_3785 -1.0 -4.0 Twin-arginine translocation protein TatB compare
Pf6N2E2_3751 -1.0 -2.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3170 -1.0 -4.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3820 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_1339 -1.0 -1.1 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_3203 -1.0 -1.3 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf6N2E2_4278 -1.0 -4.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4962 -1.0 -1.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1683 -1.0 -1.0 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_2447 -1.0 -4.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4706 -1.0 -1.5 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_1385 -1.0 -1.9 FIG00956261: hypothetical protein compare
Pf6N2E2_1877 -1.0 -3.3 putative transmembrane efflux protein. compare
Pf6N2E2_3346 -1.0 -3.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_187 -1.0 -1.8 Urea ABC transporter, ATPase protein UrtE compare
Pf6N2E2_603 -1.0 -0.6 FIG00953934: hypothetical protein compare
Pf6N2E2_302 -1.0 -1.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2501 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_617 -1.0 -0.7 Probable glutathione S-transferase compare
Pf6N2E2_4248 -1.0 -4.8 SAM-dependent methyltransferases compare
Pf6N2E2_2885 -1.0 -0.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4472 -0.9 -5.6 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3138 -0.9 -3.1 YaeQ protein compare
Pf6N2E2_524 -0.9 -3.8 Inositol transport system permease protein compare
Pf6N2E2_1749 -0.9 -0.6 Cyn operon transcriptional activator compare
Pf6N2E2_1433 -0.9 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_518 -0.9 -3.7 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf6N2E2_5902 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_391 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_4097 -0.9 -6.0 FIG00953365: hypothetical protein compare
Pf6N2E2_5505 -0.9 -0.6 hypothetical protein compare
Pf6N2E2_1997 -0.9 -0.6 FIG00956406: hypothetical protein compare
Pf6N2E2_1036 -0.9 -0.9 Biopolymer transport protein ExbD/TolR compare
Pf6N2E2_146 -0.9 -2.7 Transcriptional regulator, MarR family compare
Pf6N2E2_4353 -0.9 -4.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_500 -0.9 -0.6 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_2129 -0.9 -2.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5257 -0.9 -3.8 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_2460 -0.9 -3.3 Lipase compare
Pf6N2E2_2071 -0.9 -0.6 hypothetical protein compare
Pf6N2E2_2121 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_1396 -0.9 -0.7 ABC transporter, ATP-binding protein compare
Pf6N2E2_1602 -0.9 -0.6 hypothetical protein compare
Pf6N2E2_4596 -0.9 -0.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2072 -0.9 -0.8 hypothetical protein compare
Pf6N2E2_841 -0.9 -0.8 hypothetical protein compare
Pf6N2E2_4896 -0.9 -1.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_5227 -0.9 -4.0 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_2118 -0.9 -6.6 Trehalose synthase (EC 5.4.99.16) compare
Pf6N2E2_1862 -0.9 -0.8 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf6N2E2_1650 -0.9 -1.8 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_3664 -0.9 -5.6 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_4969 -0.9 -0.4 hypothetical protein compare
Pf6N2E2_5499 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_2561 -0.9 -0.6 FIG00955434: hypothetical protein compare
Pf6N2E2_4424 -0.8 -1.0 Regulator of nucleoside diphosphate kinase compare
Pf6N2E2_5020 -0.8 -1.0 FIG00955339: hypothetical protein compare
Pf6N2E2_65 -0.8 -2.3 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf6N2E2_503 -0.8 -3.2 sensor histidine kinase compare
Pf6N2E2_3839 -0.8 -0.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5876 -0.8 -2.9 Lipase (EC 3.1.1.3) compare
Pf6N2E2_70 -0.8 -2.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1663 -0.8 -3.6 2-keto-3-deoxy-L-fuconate dehydrogenase compare
Pf6N2E2_4454 -0.8 -2.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_919 -0.8 -0.5 FIG00954373: hypothetical protein compare
Pf6N2E2_2425 -0.8 -3.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5242 -0.8 -1.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5622 -0.8 -0.5 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_2140 -0.8 -2.8 Paraquat-inducible protein A compare
Pf6N2E2_4678 -0.8 -0.5 hypothetical protein compare
Pf6N2E2_2496 -0.8 -0.6 FIG00956575: hypothetical protein compare
Pf6N2E2_3748 -0.8 -0.5 Cytochrome B561 compare
Pf6N2E2_1325 -0.8 -1.0 FIG00954773: hypothetical protein compare
Pf6N2E2_3253 -0.8 -0.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5328 -0.8 -0.7 FIG00958649: hypothetical protein compare
Pf6N2E2_953 -0.8 -0.5 FIG00958851: hypothetical protein compare
Pf6N2E2_2544 -0.8 -2.9 Deblocking aminopeptidase (EC 3.4.11.-) @ Cyanophycinase 2 (EC 3.4.15.6) compare
Pf6N2E2_5666 -0.8 -0.7 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_1122 -0.8 -1.2 MotA/TolQ/ExbB proton channel family protein compare
Pf6N2E2_2985 -0.8 -2.4 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_968 -0.8 -1.3 FIG00962395: hypothetical protein compare
Pf6N2E2_156 -0.8 -1.2 Carbon storage regulator compare
Pf6N2E2_5455 -0.8 -0.5 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Ying_sugar7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_sugar7 across organisms