Experiment set24S402 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Others16 rep C; time point 1

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -4.4 -8.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -3.7 -8.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_71 -3.1 -5.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3661 -2.9 -15.1 hypothetical protein compare
Pf6N2E2_2074 -2.8 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_63 -2.6 -3.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_77 -2.6 -3.9 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3842 -2.6 -5.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_64 -2.6 -1.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3645 -2.6 -12.2 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_5177 -2.5 -3.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3940 -2.5 -10.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4473 -2.5 -10.7 HlyD family secretion protein compare
Pf6N2E2_3932 -2.5 -3.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_1885 -2.4 -1.6 Transcriptional regulator, AraC family compare
Pf6N2E2_4826 -2.4 -5.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_2139 -2.3 -3.6 Paraquat-inducible protein A compare
Pf6N2E2_2318 -2.3 -19.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2320 -2.3 -10.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_451 -2.2 -1.5 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3610 -2.2 -2.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1743 -2.2 -2.0 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_2822 -2.2 -6.3 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3252 -2.1 -2.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3240 -2.1 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4048 -2.1 -4.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5338 -2.1 -18.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2073 -2.1 -6.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4596 -2.1 -3.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_66 -2.0 -5.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2675 -2.0 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3687 -2.0 -1.3 FIG00959437: hypothetical protein compare
Pf6N2E2_3786 -2.0 -10.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_5668 -1.9 -7.2 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3253 -1.9 -3.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_962 -1.9 -1.2 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_302 -1.9 -5.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5339 -1.9 -14.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2501 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_5505 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_6099 -1.9 -0.8 tRNA-Glu-TTC compare
Pf6N2E2_5337 -1.9 -12.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4307 -1.9 -1.8 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_3841 -1.9 -2.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4825 -1.9 -3.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2858 -1.8 -1.7 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_4471 -1.8 -5.9 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2561 -1.8 -1.2 FIG00955434: hypothetical protein compare
Pf6N2E2_2071 -1.8 -1.1 hypothetical protein compare
Pf6N2E2_3839 -1.8 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5455 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_3088 -1.7 -1.0 hypothetical protein compare
Pf6N2E2_2656 -1.7 -1.6 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_4597 -1.7 -2.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5679 -1.7 -2.9 hypothetical protein compare
Pf6N2E2_178 -1.7 -0.7 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3630 -1.6 -5.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4472 -1.6 -9.9 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2487 -1.6 -0.7 FIG00956090: hypothetical protein compare
Pf6N2E2_2473 -1.6 -0.7 Major outer membrane lipoprotein I compare
Pf6N2E2_50 -1.6 -6.3 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3984 -1.6 -10.1 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4083 -1.6 -3.1 hypothetical protein compare
Pf6N2E2_5647 -1.6 -3.1 Transcriptional regulator, TetR family compare
Pf6N2E2_339 -1.6 -1.0 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_953 -1.6 -1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_3853 -1.6 -1.5 hypothetical protein compare
Pf6N2E2_4534 -1.6 -1.8 hypothetical protein compare
Pf6N2E2_3248 -1.6 -4.2 Probable transmembrane protein compare
Pf6N2E2_669 -1.6 -1.1 Nuclease inhibitor compare
Pf6N2E2_3264 -1.5 -9.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4824 -1.5 -4.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_4710 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_3785 -1.5 -5.4 Twin-arginine translocation protein TatB compare
Pf6N2E2_638 -1.5 -1.0 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2072 -1.5 -1.7 hypothetical protein compare
Pf6N2E2_4700 -1.5 -1.0 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_4969 -1.5 -0.6 hypothetical protein compare
Pf6N2E2_5257 -1.5 -7.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_5666 -1.5 -2.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3120 -1.4 -1.3 Chemotaxis signal transduction protein compare
Pf6N2E2_3752 -1.4 -10.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3573 -1.4 -0.9 HupE-UreJ family metal transporter compare
Pf6N2E2_5258 -1.4 -3.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3763 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_5175 -1.4 -3.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_939 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_5703 -1.4 -0.9 outer membrane protein H1 compare
Pf6N2E2_74 -1.4 -0.9 DedD protein compare
Pf6N2E2_445 -1.4 -7.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_405 -1.4 -0.8 hypothetical protein compare
Pf6N2E2_4601 -1.3 -1.2 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_3170 -1.3 -5.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_5665 -1.3 -5.4 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_4752 -1.3 -8.1 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_3659 -1.3 -6.8 Protein fixF compare
Pf6N2E2_4918 -1.3 -1.5 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_4706 -1.3 -3.1 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_1412 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_193 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_278 -1.3 -1.5 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_3323 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_1893 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_3326 -1.3 -0.7 hypothetical protein compare
Pf6N2E2_4762 -1.3 -0.8 Biotin synthesis protein BioH compare
Pf6N2E2_2196 -1.3 -1.7 FIG00953347: hypothetical protein compare
Pf6N2E2_3667 -1.3 -5.8 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_1747 -1.3 -0.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5807 -1.3 -1.2 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_4564 -1.3 -4.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2752 -1.3 -2.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2655 -1.3 -1.4 Agmatinase (EC 3.5.3.11) compare
Pf6N2E2_469 -1.3 -0.8 lipoprotein, putative compare
Pf6N2E2_4075 -1.2 -6.6 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4077 -1.2 -0.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2753 -1.2 -3.5 HtrA protease/chaperone protein compare
Pf6N2E2_1959 -1.2 -0.8 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_841 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_4300 -1.2 -1.6 Uncharacterized protein similar to VCA0109 compare
Pf6N2E2_1506 -1.2 -1.1 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_2064 -1.2 -0.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_4187 -1.2 -11.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3251 -1.2 -6.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_1803 -1.2 -0.8 Polysaccharide deacetylase compare
Pf6N2E2_4721 -1.2 -2.1 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf6N2E2_712 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_3816 -1.2 -7.7 Glycogen phosphorylase (EC 2.4.1.1) compare
Pf6N2E2_3738 -1.2 -2.3 General secretion pathway protein L compare
Pf6N2E2_734 -1.2 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_472 -1.2 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_4351 -1.2 -8.0 Predicted signal transduction protein compare
Pf6N2E2_537 -1.2 -1.5 Na(+) H(+) antiporter subunit C compare
Pf6N2E2_3271 -1.2 -2.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1553 -1.2 -1.1 Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18) compare
Pf6N2E2_2440 -1.2 -0.7 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_1396 -1.2 -1.5 ABC transporter, ATP-binding protein compare
Pf6N2E2_5496 -1.2 -0.8 FIG00953991: hypothetical protein compare
Pf6N2E2_650 -1.2 -1.1 General secretion pathway protein M compare
Pf6N2E2_2264 -1.2 -1.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_6075 -1.2 -1.3 Chromosome segregation ATPases compare
Pf6N2E2_5527 -1.1 -2.0 Cold shock protein CspC compare
Pf6N2E2_2168 -1.1 -1.1 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf6N2E2_4541 -1.1 -0.8 hypothetical protein compare
Pf6N2E2_4072 -1.1 -5.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4181 -1.1 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_2788 -1.1 -0.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_453 -1.1 -0.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_443 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4467 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_94 -1.1 -1.3 Cyn operon transcriptional activator compare
Pf6N2E2_3093 -1.1 -0.8 Transcriptional regulator, TetR family compare
Pf6N2E2_1028 -1.1 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_1526 -1.1 -1.4 MgtC family compare
Pf6N2E2_1705 -1.1 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2552 -1.1 -3.6 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2778 -1.1 -0.7 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_3751 -1.1 -6.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_51 -1.1 -7.1 hypothetical protein compare
Pf6N2E2_2132 -1.1 -1.4 FIG00956937: hypothetical protein compare
Pf6N2E2_4732 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2849 -1.1 -0.7 Chromosome initiation inhibitor compare
Pf6N2E2_3521 -1.1 -5.5 Sensor histidine kinase/response regulator compare
Pf6N2E2_3663 -1.1 -7.4 Glycosyl transferase compare
Pf6N2E2_70 -1.1 -4.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3237 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2474 -1.1 -6.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_1514 -1.1 -1.4 lipoprotein OprI, putative compare
Pf6N2E2_5962 -1.1 -4.5 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1089 -1.1 -0.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_6085 -1.1 -0.7 Aha1 domain superfamily compare
Pf6N2E2_4719 -1.1 -5.2 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf6N2E2_2769 -1.1 -1.6 Tricarboxylate transport protein TctB compare
Pf6N2E2_2992 -1.1 -1.6 Regulatory protein RecX compare
Pf6N2E2_3198 -1.1 -0.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2080 -1.1 -0.8 hypothetical protein compare
Pf6N2E2_165 -1.0 -0.7 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_1875 -1.0 -0.7 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2317 -1.0 -2.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2246 -1.0 -1.0 Arabinose efflux permease compare
Pf6N2E2_3825 -1.0 -1.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2217 -1.0 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1625 -1.0 -0.7 Ferric reductase (1.6.99.14) compare
Pf6N2E2_4715 -1.0 -0.7 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_4717 -1.0 -6.2 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Pf6N2E2_237 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_2117 -1.0 -7.3 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf6N2E2_5453 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_1399 -1.0 -0.6 Transcriptional regulator, LuxR family compare
Pf6N2E2_304 -1.0 -1.6 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_4701 -1.0 -6.4 FIG00953113: hypothetical protein compare
Pf6N2E2_552 -1.0 -0.6 Uncharacterized protein ImpF compare
Pf6N2E2_4720 -1.0 -8.0 Sarcosine oxidase alpha subunit (EC 1.5.3.1) compare
Pf6N2E2_2186 -1.0 -3.5 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_3221 -1.0 -0.6 FIG00352444: hypothetical protein compare
Pf6N2E2_5720 -1.0 -0.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4258 -1.0 -1.1 FIG00953800: hypothetical protein compare
Pf6N2E2_3169 -1.0 -0.7 Membrane proteins related to metalloendopeptidases compare
Pf6N2E2_3912 -1.0 -0.6 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_663 -1.0 -0.9 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_1981 -1.0 -0.6 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Ying_Others16 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Others16 across organisms