Experiment set24S400 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Others16 rep A; time point 1

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -3.7 -7.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -3.6 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2074 -3.6 -4.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3661 -3.5 -14.7 hypothetical protein compare
Pf6N2E2_71 -3.1 -3.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3940 -2.7 -9.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3842 -2.7 -4.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_63 -2.6 -5.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3264 -2.5 -8.9 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3645 -2.5 -10.8 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_5177 -2.5 -3.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_64 -2.5 -1.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2318 -2.4 -19.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2822 -2.3 -6.5 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_4826 -2.3 -5.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3610 -2.3 -2.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2320 -2.2 -8.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_77 -2.2 -2.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_451 -2.2 -1.4 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_66 -2.2 -3.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4048 -2.2 -4.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4473 -2.1 -8.8 HlyD family secretion protein compare
Pf6N2E2_4467 -2.1 -1.4 hypothetical protein compare
Pf6N2E2_4721 -2.1 -2.4 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf6N2E2_3240 -2.0 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3687 -2.0 -1.3 FIG00959437: hypothetical protein compare
Pf6N2E2_3932 -2.0 -3.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2139 -2.0 -3.7 Paraquat-inducible protein A compare
Pf6N2E2_3252 -2.0 -2.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2675 -2.0 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5338 -1.9 -16.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_1862 -1.9 -1.3 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf6N2E2_4596 -1.9 -3.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_1085 -1.9 -1.2 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_3841 -1.9 -3.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3786 -1.9 -7.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_3785 -1.9 -9.8 Twin-arginine translocation protein TatB compare
Pf6N2E2_3984 -1.8 -10.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4307 -1.8 -1.7 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_5505 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_5339 -1.8 -14.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3667 -1.8 -7.5 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3253 -1.8 -3.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_500 -1.8 -1.2 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_2073 -1.8 -4.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4427 -1.8 -0.9 FIG00954215: hypothetical protein compare
Pf6N2E2_5337 -1.7 -13.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4471 -1.7 -6.4 ABC-type multidrug transport system, permease component compare
Pf6N2E2_331 -1.7 -2.0 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_4541 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_3839 -1.7 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_50 -1.7 -7.1 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_1997 -1.7 -1.1 FIG00956406: hypothetical protein compare
Pf6N2E2_302 -1.7 -5.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2071 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_5258 -1.7 -3.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_3248 -1.7 -6.1 Probable transmembrane protein compare
Pf6N2E2_5455 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_5668 -1.6 -4.7 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3251 -1.6 -7.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4825 -1.6 -2.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_2656 -1.6 -1.5 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_445 -1.6 -8.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4597 -1.6 -2.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4059 -1.6 -0.7 DNA-binding protein HU-alpha compare
Pf6N2E2_2080 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_4472 -1.6 -9.4 ABC-type multidrug transport system, permease component compare
Pf6N2E2_1870 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_178 -1.6 -0.7 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1709 -1.5 -1.4 multidrug resistance transporter, Bcr/CflA family compare
Pf6N2E2_5257 -1.5 -6.7 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_3630 -1.5 -6.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4917 -1.5 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2487 -1.5 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_339 -1.5 -1.0 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_973 -1.5 -1.0 Single-stranded DNA-binding protein compare
Pf6N2E2_6035 -1.5 -1.0 alpha/beta hydrolase fold compare
Pf6N2E2_1834 -1.5 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_953 -1.5 -1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_168 -1.5 -2.2 hypothetical protein compare
Pf6N2E2_4706 -1.5 -3.5 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3748 -1.5 -1.4 Cytochrome B561 compare
Pf6N2E2_3015 -1.5 -1.4 hypothetical protein compare
Pf6N2E2_2317 -1.5 -4.4 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1325 -1.5 -1.9 FIG00954773: hypothetical protein compare
Pf6N2E2_5679 -1.4 -3.4 hypothetical protein compare
Pf6N2E2_3752 -1.4 -10.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4710 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_1246 -1.4 -0.9 FIG00961372: hypothetical protein compare
Pf6N2E2_4969 -1.4 -0.6 hypothetical protein compare
Pf6N2E2_3573 -1.4 -0.9 HupE-UreJ family metal transporter compare
Pf6N2E2_2753 -1.4 -4.4 HtrA protease/chaperone protein compare
Pf6N2E2_3763 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_4458 -1.4 -1.0 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_4700 -1.4 -0.9 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_3558 -1.4 -2.7 DnaJ-class molecular chaperone CbpA compare
Pf6N2E2_5647 -1.4 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4187 -1.4 -12.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_37 -1.4 -1.6 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2465 -1.4 -1.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_1279 -1.3 -1.2 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_2072 -1.3 -1.5 hypothetical protein compare
Pf6N2E2_3170 -1.3 -5.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4719 -1.3 -5.9 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf6N2E2_5175 -1.3 -3.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_295 -1.3 -0.9 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_5666 -1.3 -2.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4150 -1.3 -0.9 probable exported protein YPO0432 compare
Pf6N2E2_5262 -1.3 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_5665 -1.3 -5.4 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_74 -1.3 -0.8 DedD protein compare
Pf6N2E2_1412 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_2474 -1.3 -7.3 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5272 -1.3 -0.9 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_94 -1.2 -1.2 Cyn operon transcriptional activator compare
Pf6N2E2_3179 -1.2 -0.8 FIG021952: putative membrane protein compare
Pf6N2E2_2806 -1.2 -0.8 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_4752 -1.2 -7.6 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_469 -1.2 -0.8 lipoprotein, putative compare
Pf6N2E2_4564 -1.2 -4.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5452 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_4701 -1.2 -6.8 FIG00953113: hypothetical protein compare
Pf6N2E2_4762 -1.2 -0.8 Biotin synthesis protein BioH compare
Pf6N2E2_1893 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_939 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_2919 -1.2 -1.1 FIG00955830: hypothetical protein compare
Pf6N2E2_279 -1.2 -6.4 Isocitrate lyase (EC 4.1.3.1) compare
Pf6N2E2_3455 -1.2 -0.8 Integral membrane protein YfiB compare
Pf6N2E2_5676 -1.2 -1.4 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_2132 -1.2 -1.4 FIG00956937: hypothetical protein compare
Pf6N2E2_2018 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_3521 -1.2 -5.6 Sensor histidine kinase/response regulator compare
Pf6N2E2_2217 -1.2 -1.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4077 -1.2 -0.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1959 -1.2 -0.8 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_3751 -1.2 -6.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5820 -1.2 -0.8 FIG00957914: hypothetical protein compare
Pf6N2E2_472 -1.2 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_734 -1.2 -0.7 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_4306 -1.1 -1.8 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_5806 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2591 -1.1 -0.8 Flagellar assembly protein FliH compare
Pf6N2E2_2842 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_1803 -1.1 -0.7 Polysaccharide deacetylase compare
Pf6N2E2_1125 -1.1 -1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_2064 -1.1 -0.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_443 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_453 -1.1 -0.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_736 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_4779 -1.1 -1.4 Transcriptional regulator, AsnC family compare
Pf6N2E2_2788 -1.1 -0.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_2752 -1.1 -2.7 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_669 -1.1 -1.2 Nuclease inhibitor compare
Pf6N2E2_1490 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_1404 -1.1 -1.0 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_2706 -1.1 -1.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_425 -1.1 -1.0 FIG00957304: hypothetical protein compare
Pf6N2E2_2778 -1.1 -0.7 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_3234 -1.1 -1.0 mandelate racemase/muconate lactonizing enzyme family protein compare
Pf6N2E2_4570 -1.1 -0.7 Cation/multidrug efflux pump compare
Pf6N2E2_3659 -1.1 -5.2 Protein fixF compare
Pf6N2E2_4181 -1.1 -0.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_3680 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_3107 -1.1 -1.6 unknown, without homologous in databases compare
Pf6N2E2_1502 -1.1 -0.6 Two-component system regulatory protein compare
Pf6N2E2_70 -1.1 -3.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5419 -1.1 -0.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_4720 -1.1 -8.6 Sarcosine oxidase alpha subunit (EC 1.5.3.1) compare
Pf6N2E2_3778 -1.1 -1.5 FIG00954300: hypothetical protein compare
Pf6N2E2_1028 -1.1 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_304 -1.1 -1.5 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_1432 -1.1 -1.8 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Pf6N2E2_6100 -1.1 -0.8 tRNA-Val-TAC compare
Pf6N2E2_2769 -1.0 -1.4 Tricarboxylate transport protein TctB compare
Pf6N2E2_2849 -1.0 -0.7 Chromosome initiation inhibitor compare
Pf6N2E2_942 -1.0 -0.9 Mll6465 protein compare
Pf6N2E2_1705 -1.0 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5081 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_4732 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_4279 -1.0 -7.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4070 -1.0 -1.0 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Pf6N2E2_1452 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_5703 -1.0 -1.0 outer membrane protein H1 compare
Pf6N2E2_1089 -1.0 -0.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_848 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_4567 -1.0 -1.2 ThiJ/PfpI family protein compare
Pf6N2E2_6082 -1.0 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3938 -1.0 -6.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_375 -1.0 -0.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4075 -1.0 -6.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4704 -1.0 -5.6 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) compare
Pf6N2E2_5517 -1.0 -0.7 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_6085 -1.0 -0.6 Aha1 domain superfamily compare
Pf6N2E2_1161 -1.0 -1.9 FIG00961921: hypothetical protein compare
Pf6N2E2_4824 -1.0 -2.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_5097 -1.0 -0.7 FIG00953595: hypothetical protein compare
Pf6N2E2_1875 -1.0 -0.6 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2795 -1.0 -0.6 putative exported protein compare
Pf6N2E2_552 -1.0 -0.6 Uncharacterized protein ImpF compare
Pf6N2E2_395 -1.0 -2.2 Glutathione S-transferase (EC 2.5.1.18) compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Ying_Others16 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Others16 across organisms