Experiment set24S398 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_Nucleobase14 rep B; time point 1

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3783 -3.9 -8.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3782 -3.8 -7.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2074 -3.6 -4.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3932 -3.4 -2.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3661 -3.2 -16.6 hypothetical protein compare
Pf6N2E2_63 -2.8 -4.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3645 -2.7 -11.7 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_2139 -2.6 -2.6 Paraquat-inducible protein A compare
Pf6N2E2_77 -2.5 -3.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5177 -2.5 -4.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_71 -2.5 -4.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5647 -2.5 -3.0 Transcriptional regulator, TetR family compare
Pf6N2E2_4826 -2.5 -3.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4307 -2.5 -1.7 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_2822 -2.4 -7.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2753 -2.3 -3.9 HtrA protease/chaperone protein compare
Pf6N2E2_5803 -2.3 -6.9 Allantoicase (EC 3.5.3.4) compare
Pf6N2E2_4473 -2.3 -10.0 HlyD family secretion protein compare
Pf6N2E2_3842 -2.3 -5.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3610 -2.2 -2.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3630 -2.2 -6.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_64 -2.2 -2.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3751 -2.2 -7.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4048 -2.2 -4.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2674 -2.2 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_66 -2.2 -3.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4471 -2.2 -6.0 ABC-type multidrug transport system, permease component compare
Pf6N2E2_3752 -2.1 -12.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3240 -2.1 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2318 -2.1 -17.1 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3252 -2.1 -2.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5679 -2.1 -4.4 hypothetical protein compare
Pf6N2E2_3687 -2.1 -1.4 FIG00959437: hypothetical protein compare
Pf6N2E2_4596 -2.1 -3.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2320 -2.0 -8.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5223 -1.9 -4.7 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_4541 -1.9 -1.1 hypothetical protein compare
Pf6N2E2_2501 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_4825 -1.9 -3.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_962 -1.9 -1.2 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_4590 -1.8 -4.7 Thiazole biosynthesis protein ThiG compare
Pf6N2E2_1759 -1.8 -1.2 uncharacterized domain 1 compare
Pf6N2E2_3839 -1.8 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4472 -1.8 -10.4 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2073 -1.8 -5.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_5622 -1.8 -1.1 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_5455 -1.8 -1.1 hypothetical protein compare
Pf6N2E2_3940 -1.8 -9.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3253 -1.7 -2.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_605 -1.7 -1.6 FIG002465: BNR repeat protein compare
Pf6N2E2_482 -1.7 -1.1 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_2071 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_3659 -1.7 -8.1 Protein fixF compare
Pf6N2E2_3702 -1.7 -1.1 FIG00953907: hypothetical protein compare
Pf6N2E2_5258 -1.7 -3.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2656 -1.7 -1.6 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_4597 -1.6 -1.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2549 -1.6 -0.9 hypothetical protein compare
Pf6N2E2_5807 -1.6 -1.1 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_3984 -1.6 -9.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2258 -1.6 -3.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2487 -1.6 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_4990 -1.6 -1.0 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_5838 -1.6 -3.9 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_4710 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_4145 -1.6 -1.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_4779 -1.6 -1.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_4700 -1.6 -1.0 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_339 -1.6 -1.0 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_3644 -1.5 -7.4 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) compare
Pf6N2E2_953 -1.5 -1.0 FIG00958851: hypothetical protein compare
Pf6N2E2_4969 -1.5 -0.6 hypothetical protein compare
Pf6N2E2_3763 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_3573 -1.5 -1.0 HupE-UreJ family metal transporter compare
Pf6N2E2_733 -1.5 -2.9 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_5802 -1.5 -5.9 Ureidoglycolate hydrolase (EC 3.5.3.19) compare
Pf6N2E2_1220 -1.5 -1.4 hypothetical protein compare
Pf6N2E2_3588 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_1246 -1.4 -0.9 FIG00961372: hypothetical protein compare
Pf6N2E2_3014 -1.4 -1.3 P2-like prophage tail protein X compare
Pf6N2E2_302 -1.4 -4.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2509 -1.4 -2.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5175 -1.4 -3.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2324 -1.4 -1.8 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_3060 -1.4 -3.2 Outer membrane protein H precursor compare
Pf6N2E2_3234 -1.4 -0.9 mandelate racemase/muconate lactonizing enzyme family protein compare
Pf6N2E2_4762 -1.4 -0.9 Biotin synthesis protein BioH compare
Pf6N2E2_4564 -1.4 -4.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5024 -1.4 -0.9 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_2223 -1.4 -2.1 hypothetical protein compare
Pf6N2E2_74 -1.3 -0.9 DedD protein compare
Pf6N2E2_1381 -1.3 -2.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_3727 -1.3 -1.2 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_4077 -1.3 -0.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1258 -1.3 -0.9 FIG00960119: hypothetical protein compare
Pf6N2E2_94 -1.3 -1.2 Cyn operon transcriptional activator compare
Pf6N2E2_295 -1.3 -0.9 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_5257 -1.3 -6.3 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_193 -1.3 -0.8 hypothetical protein compare
Pf6N2E2_156 -1.3 -2.0 Carbon storage regulator compare
Pf6N2E2_3455 -1.3 -0.8 Integral membrane protein YfiB compare
Pf6N2E2_5023 -1.3 -1.2 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_500 -1.2 -1.4 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_3488 -1.2 -1.6 Cu(I)-responsive transcriptional regulator compare
Pf6N2E2_5805 -1.2 -3.4 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_5394 -1.2 -2.9 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_2925 -1.2 -1.2 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 1 LivG (from data) compare
Pf6N2E2_469 -1.2 -0.8 lipoprotein, putative compare
Pf6N2E2_2423 -1.2 -6.5 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_1526 -1.2 -1.4 MgtC family compare
Pf6N2E2_2300 -1.2 -1.7 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_99 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_4181 -1.2 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_827 -1.2 -0.8 probable dioxygenase compare
Pf6N2E2_2842 -1.2 -1.0 hypothetical protein compare
Pf6N2E2_1959 -1.2 -0.8 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_3170 -1.2 -4.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3279 -1.2 -0.8 FIG138315: Putative alpha helix protein compare
Pf6N2E2_5920 -1.2 -1.5 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf6N2E2_734 -1.2 -0.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1448 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_5231 -1.2 -1.9 COG3380: Amine oxidase, flavin-containing compare
Pf6N2E2_62 -1.2 -1.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_3658 -1.2 -9.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4732 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_2507 -1.2 -3.9 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2336 -1.2 -5.1 Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) compare
Pf6N2E2_472 -1.2 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_5780 -1.2 -3.5 Periplasmic protease compare
Pf6N2E2_474 -1.2 -1.8 Transcriptional regulator, ArsR family compare
Pf6N2E2_650 -1.2 -1.1 General secretion pathway protein M compare
Pf6N2E2_5962 -1.2 -4.0 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_4171 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_2752 -1.1 -2.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_1635 -1.1 -1.5 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_2778 -1.1 -0.7 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_2440 -1.1 -0.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_1490 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_660 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_453 -1.1 -0.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_443 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1834 -1.1 -1.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2849 -1.1 -0.7 Chromosome initiation inhibitor compare
Pf6N2E2_3198 -1.1 -0.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4556 -1.1 -1.0 FIG00953078: hypothetical protein compare
Pf6N2E2_5703 -1.1 -1.0 outer membrane protein H1 compare
Pf6N2E2_1028 -1.1 -0.7 Transcriptional regulator, LysR family compare
Pf6N2E2_939 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_3171 -1.1 -0.6 hypothetical protein compare
Pf6N2E2_5301 -1.1 -1.7 FIG00957554: hypothetical protein compare
Pf6N2E2_2465 -1.1 -2.1 Cys regulon transcriptional activator CysB compare
Pf6N2E2_1705 -1.1 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_942 -1.1 -0.9 Mll6465 protein compare
Pf6N2E2_2850 -1.1 -1.7 Transporter, LysE family compare
Pf6N2E2_5638 -1.0 -1.7 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_217 -1.0 -1.2 Signal transduction histidine kinase compare
Pf6N2E2_5756 -1.0 -0.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2795 -1.0 -0.6 putative exported protein compare
Pf6N2E2_2508 -1.0 -3.6 hypothetical protein compare
Pf6N2E2_1089 -1.0 -0.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3841 -1.0 -3.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_165 -1.0 -0.7 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_2552 -1.0 -2.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3203 -1.0 -2.3 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf6N2E2_3221 -1.0 -0.7 FIG00352444: hypothetical protein compare
Pf6N2E2_552 -1.0 -0.6 Uncharacterized protein ImpF compare
Pf6N2E2_6085 -1.0 -0.6 Aha1 domain superfamily compare
Pf6N2E2_1875 -1.0 -0.6 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_3015 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_5392 -1.0 -3.5 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_1035 -1.0 -0.9 MotA/TolQ/ExbB proton channel family protein compare
Pf6N2E2_5111 -1.0 -0.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_3810 -1.0 -0.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3720 -1.0 -0.6 FIG027190: Putative transmembrane protein compare
Pf6N2E2_6093 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_237 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_3003 -1.0 -0.9 Bacteriophage protein GP46 compare
Pf6N2E2_2422 -1.0 -4.8 Molybdopterin biosynthesis protein MoeA compare
Pf6N2E2_1273 -1.0 -0.7 Probable RND efflux membrane fusion protein compare
Pf6N2E2_5720 -1.0 -0.7 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2162 -1.0 -1.1 Cytochrome c4 compare
Pf6N2E2_2337 -1.0 -6.1 Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) compare
Pf6N2E2_3737 -1.0 -0.5 General secretion pathway protein M compare
Pf6N2E2_1352 -1.0 -0.6 Cation transport ATPase compare
Pf6N2E2_5599 -1.0 -0.6 Electron transport complex protein RnfA compare
Pf6N2E2_4935 -1.0 -1.4 Fic family protein compare
Pf6N2E2_1743 -1.0 -1.2 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_3663 -1.0 -7.0 Glycosyl transferase compare
Pf6N2E2_3192 -1.0 -1.4 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_48 -1.0 -0.6 FIG00955661: hypothetical protein compare
Pf6N2E2_3852 -0.9 -0.9 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Pf6N2E2_1981 -0.9 -0.6 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2161 -0.9 -1.5 Conserved domain protein compare
Pf6N2E2_5338 -0.9 -8.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2591 -0.9 -0.9 Flagellar assembly protein FliH compare
Pf6N2E2_4531 -0.9 -0.4 hypothetical protein compare
Pf6N2E2_4761 -0.9 -0.9 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4047 -0.9 -0.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_2080 -0.9 -0.7 hypothetical protein compare
Pf6N2E2_30 -0.9 -1.4 Antisigma transmembrane sensor FpvR compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Ying_Nucleobase14 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_Nucleobase14 across organisms