Experiment set24S390 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_sugar7 rep C; time point 1

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -4.1 -7.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -4.0 -8.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_63 -2.5 -5.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2440 -2.5 -1.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_71 -2.5 -6.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_942 -2.5 -1.7 Mll6465 protein compare
Pf6N2E2_2074 -2.5 -4.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_77 -2.5 -3.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3630 -2.4 -5.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3842 -2.3 -5.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5177 -2.3 -4.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_64 -2.2 -2.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_451 -2.1 -1.4 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3751 -2.1 -7.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3940 -2.1 -10.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4048 -2.1 -3.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4473 -2.1 -10.5 HlyD family secretion protein compare
Pf6N2E2_3240 -2.1 -0.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4826 -2.0 -5.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3610 -2.0 -2.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3752 -2.0 -11.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3645 -2.0 -11.5 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_3687 -2.0 -1.3 FIG00959437: hypothetical protein compare
Pf6N2E2_4596 -2.0 -3.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2822 -2.0 -6.6 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_66 -1.9 -4.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2675 -1.9 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4307 -1.8 -1.7 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_2933 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_3661 -1.8 -12.8 hypothetical protein compare
Pf6N2E2_3252 -1.8 -3.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_1085 -1.8 -1.2 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_2501 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_4825 -1.8 -3.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3841 -1.7 -2.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3839 -1.7 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5455 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_4597 -1.6 -1.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3170 -1.6 -7.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2656 -1.6 -1.5 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_1749 -1.6 -1.0 Cyn operon transcriptional activator compare
Pf6N2E2_178 -1.6 -0.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2088 -1.5 -0.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_922 -1.5 -1.8 FIG00794167: hypothetical protein compare
Pf6N2E2_3253 -1.5 -2.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2487 -1.5 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_2473 -1.5 -0.6 Major outer membrane lipoprotein I compare
Pf6N2E2_4990 -1.5 -1.0 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_3984 -1.5 -9.7 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4710 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_5679 -1.5 -2.8 hypothetical protein compare
Pf6N2E2_1396 -1.5 -1.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_4700 -1.5 -1.0 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_4678 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_2885 -1.5 -5.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5338 -1.5 -12.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2217 -1.5 -1.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_953 -1.4 -0.9 FIG00958851: hypothetical protein compare
Pf6N2E2_4969 -1.4 -0.6 hypothetical protein compare
Pf6N2E2_3763 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_1404 -1.4 -0.9 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_4471 -1.4 -6.3 ABC-type multidrug transport system, permease component compare
Pf6N2E2_638 -1.4 -0.9 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_3573 -1.4 -0.9 HupE-UreJ family metal transporter compare
Pf6N2E2_2162 -1.4 -0.9 Cytochrome c4 compare
Pf6N2E2_1246 -1.3 -0.9 FIG00961372: hypothetical protein compare
Pf6N2E2_704 -1.3 -0.9 Cytochrome c551/c552 compare
Pf6N2E2_5175 -1.3 -3.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5339 -1.3 -8.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2324 -1.3 -1.7 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_3659 -1.3 -6.5 Protein fixF compare
Pf6N2E2_4601 -1.3 -1.2 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_4564 -1.3 -4.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2900 -1.3 -1.7 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_5910 -1.3 -1.2 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_756 -1.3 -2.1 hypothetical protein compare
Pf6N2E2_4762 -1.3 -0.8 Biotin synthesis protein BioH compare
Pf6N2E2_74 -1.3 -0.8 DedD protein compare
Pf6N2E2_2258 -1.3 -4.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4472 -1.2 -8.6 ABC-type multidrug transport system, permease component compare
Pf6N2E2_5337 -1.2 -9.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2897 -1.2 -6.0 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_3323 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_3727 -1.2 -1.1 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_4077 -1.2 -0.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5647 -1.2 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3658 -1.2 -8.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2041 -1.2 -1.5 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf6N2E2_500 -1.2 -1.3 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_5030 -1.2 -5.8 Transcriptional regulator, AsnC family compare
Pf6N2E2_719 -1.2 -0.6 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_469 -1.2 -0.7 lipoprotein, putative compare
Pf6N2E2_4779 -1.2 -1.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_3455 -1.2 -0.8 Integral membrane protein YfiB compare
Pf6N2E2_2073 -1.2 -4.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_99 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_3251 -1.1 -6.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5807 -1.1 -1.1 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_2899 -1.1 -1.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5806 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2591 -1.1 -0.7 Flagellar assembly protein FliH compare
Pf6N2E2_2360 -1.1 -1.0 cell invasion protein SipB compare
Pf6N2E2_4599 -1.1 -3.8 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_2509 -1.1 -2.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1452 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_4181 -1.1 -0.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_1759 -1.1 -1.0 uncharacterized domain 1 compare
Pf6N2E2_472 -1.1 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_2842 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_2064 -1.1 -0.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_806 -1.1 -6.7 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_2296 -1.1 -1.2 FIG00954767: hypothetical protein compare
Pf6N2E2_4732 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2508 -1.1 -2.8 hypothetical protein compare
Pf6N2E2_5272 -1.1 -1.0 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_734 -1.1 -0.7 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1345 -1.1 -1.7 NADH:flavin oxidoreductases, Old Yellow Enzyme family compare
Pf6N2E2_2510 -1.1 -2.4 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5419 -1.1 -0.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_146 -1.1 -3.5 Transcriptional regulator, MarR family compare
Pf6N2E2_2139 -1.0 -3.1 Paraquat-inducible protein A compare
Pf6N2E2_453 -1.0 -0.6 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2788 -1.0 -0.6 Transcriptional regulator, AsnC family compare
Pf6N2E2_443 -1.0 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5576 -1.0 -1.2 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_650 -1.0 -0.9 General secretion pathway protein M compare
Pf6N2E2_2318 -1.0 -8.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3237 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_2778 -1.0 -0.7 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_3198 -1.0 -0.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_1028 -1.0 -0.6 Transcriptional regulator, LysR family compare
Pf6N2E2_1502 -1.0 -0.6 Two-component system regulatory protein compare
Pf6N2E2_5174 -1.0 -2.0 Glycosyltransferase compare
Pf6N2E2_2849 -1.0 -0.6 Chromosome initiation inhibitor compare
Pf6N2E2_6085 -1.0 -0.6 Aha1 domain superfamily compare
Pf6N2E2_5638 -1.0 -1.4 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_660 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_1705 -1.0 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2752 -1.0 -2.7 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_165 -1.0 -0.6 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_1011 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_4662 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_16 -0.9 -0.4 hypothetical protein compare
Pf6N2E2_5452 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_3221 -0.9 -0.6 FIG00352444: hypothetical protein compare
Pf6N2E2_1089 -0.9 -0.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1514 -0.9 -1.2 lipoprotein OprI, putative compare
Pf6N2E2_5242 -0.9 -1.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3785 -0.9 -5.7 Twin-arginine translocation protein TatB compare
Pf6N2E2_302 -0.9 -4.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5111 -0.9 -0.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2447 -0.9 -4.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_237 -0.9 -0.6 hypothetical protein compare
Pf6N2E2_4014 -0.9 -1.7 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_3169 -0.9 -0.6 Membrane proteins related to metalloendopeptidases compare
Pf6N2E2_2496 -0.9 -0.7 FIG00956575: hypothetical protein compare
Pf6N2E2_1875 -0.9 -0.6 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_3729 -0.9 -1.6 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) compare
Pf6N2E2_3932 -0.9 -1.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4121 -0.9 -1.3 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_3107 -0.9 -1.6 unknown, without homologous in databases compare
Pf6N2E2_4631 -0.9 -1.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_55 -0.9 -0.6 Probable hydrolase compare
Pf6N2E2_6045 -0.9 -0.7 hypothetical protein compare
Pf6N2E2_5366 -0.9 -1.2 DNA-binding heavy metal response regulator compare
Pf6N2E2_1039 -0.9 -1.0 Gluconolactonase compare
Pf6N2E2_552 -0.9 -0.5 Uncharacterized protein ImpF compare
Pf6N2E2_1199 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_332 -0.9 -1.4 putative nucleoside-diphosphate-sugar epimerase compare
Pf6N2E2_516 -0.9 -3.6 Inosose isomerase (EC 5.3.99.-) compare
Pf6N2E2_4047 -0.9 -0.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4258 -0.9 -1.0 FIG00953800: hypothetical protein compare
Pf6N2E2_3810 -0.9 -0.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2132 -0.9 -1.3 FIG00956937: hypothetical protein compare
Pf6N2E2_48 -0.9 -0.5 FIG00955661: hypothetical protein compare
Pf6N2E2_3720 -0.9 -0.5 FIG027190: Putative transmembrane protein compare
Pf6N2E2_5720 -0.9 -0.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4424 -0.9 -1.4 Regulator of nucleoside diphosphate kinase compare
Pf6N2E2_2636 -0.9 -0.8 FIG027190: Putative transmembrane protein compare
Pf6N2E2_402 -0.9 -1.1 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_295 -0.9 -0.8 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_5666 -0.9 -2.3 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5599 -0.9 -0.6 Electron transport complex protein RnfA compare
Pf6N2E2_1352 -0.9 -0.6 Cation transport ATPase compare
Pf6N2E2_466 -0.9 -0.8 Nicotinamidase (EC 3.5.1.19) compare
Pf6N2E2_3663 -0.9 -5.8 Glycosyl transferase compare
Pf6N2E2_2988 -0.9 -1.0 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_1701 -0.9 -0.8 ABC transporter ATP-binding protein compare
Pf6N2E2_2320 -0.9 -3.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2449 -0.9 -3.5 FIG074102: hypothetical protein compare
Pf6N2E2_6013 -0.9 -2.2 Conserved hypothetical phage protein compare
Pf6N2E2_1981 -0.9 -0.6 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_595 -0.8 -0.5 Arsenical resistance operon repressor compare
Pf6N2E2_1671 -0.8 -0.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2445 -0.8 -2.4 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf6N2E2_4022 -0.8 -1.7 Cyn operon transcriptional activator compare
Pf6N2E2_2253 -0.8 -3.2 hypothetical protein compare
Pf6N2E2_3642 -0.8 -0.8 lipoprotein, putative compare
Pf6N2E2_4928 -0.8 -0.5 Permeases of the major facilitator superfamily compare
Pf6N2E2_3537 -0.8 -1.2 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Ying_sugar7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_sugar7 across organisms