Experiment set24S389 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_sugar7 rep B; time point 1

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2074 -3.3 -4.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3782 -3.1 -9.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3783 -2.8 -8.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_63 -2.7 -4.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2440 -2.5 -1.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_3171 -2.5 -1.0 hypothetical protein compare
Pf6N2E2_71 -2.5 -6.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_64 -2.5 -1.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4826 -2.2 -5.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_3752 -2.2 -12.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3751 -2.1 -7.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_451 -2.1 -1.4 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4048 -2.1 -3.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_77 -2.1 -2.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2674 -2.1 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_3842 -2.1 -4.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3940 -2.1 -9.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3610 -2.1 -3.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3630 -2.1 -5.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3240 -2.1 -0.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_5177 -2.1 -5.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3687 -2.1 -1.3 FIG00959437: hypothetical protein compare
Pf6N2E2_66 -2.1 -3.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_3661 -2.0 -13.7 hypothetical protein compare
Pf6N2E2_3984 -1.9 -10.7 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3645 -1.9 -11.6 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_5505 -1.8 -1.2 hypothetical protein compare
Pf6N2E2_962 -1.8 -1.2 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_2217 -1.8 -1.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4596 -1.8 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_6099 -1.8 -0.7 tRNA-Glu-TTC compare
Pf6N2E2_5679 -1.8 -4.3 hypothetical protein compare
Pf6N2E2_1759 -1.8 -1.2 uncharacterized domain 1 compare
Pf6N2E2_4825 -1.8 -3.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3839 -1.7 -1.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_603 -1.7 -1.1 FIG00953934: hypothetical protein compare
Pf6N2E2_2561 -1.7 -1.1 FIG00955434: hypothetical protein compare
Pf6N2E2_5622 -1.7 -1.1 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_3253 -1.7 -3.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4918 -1.7 -1.6 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_3088 -1.7 -1.0 hypothetical protein compare
Pf6N2E2_5455 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_3252 -1.7 -3.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2071 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_1997 -1.6 -1.1 FIG00956406: hypothetical protein compare
Pf6N2E2_4471 -1.6 -7.1 ABC-type multidrug transport system, permease component compare
Pf6N2E2_4597 -1.6 -1.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_1749 -1.6 -1.0 Cyn operon transcriptional activator compare
Pf6N2E2_3033 -1.6 -0.9 hypothetical protein compare
Pf6N2E2_848 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_2088 -1.5 -0.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_3170 -1.5 -7.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4710 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_2487 -1.5 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_5338 -1.5 -13.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_953 -1.5 -0.9 FIG00958851: hypothetical protein compare
Pf6N2E2_5115 -1.5 -1.4 Type IV fimbrial biogenesis protein PilV compare
Pf6N2E2_3763 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_4969 -1.5 -0.6 hypothetical protein compare
Pf6N2E2_3573 -1.4 -0.9 HupE-UreJ family metal transporter compare
Pf6N2E2_423 -1.4 -1.5 Putative phosphatase YfbT compare
Pf6N2E2_3658 -1.4 -10.0 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2965 -1.4 -1.3 FIG00955308: hypothetical protein compare
Pf6N2E2_1246 -1.4 -0.9 FIG00961372: hypothetical protein compare
Pf6N2E2_638 -1.4 -0.9 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_5175 -1.4 -3.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_5030 -1.4 -6.9 Transcriptional regulator, AsnC family compare
Pf6N2E2_4381 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_3841 -1.4 -3.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_806 -1.4 -8.0 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_5339 -1.4 -10.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_704 -1.4 -0.9 Cytochrome c551/c552 compare
Pf6N2E2_4150 -1.3 -0.9 probable exported protein YPO0432 compare
Pf6N2E2_4742 -1.3 -1.5 Glutathione S-transferase family protein compare
Pf6N2E2_1526 -1.3 -1.3 MgtC family compare
Pf6N2E2_4473 -1.3 -8.1 HlyD family secretion protein compare
Pf6N2E2_1068 -1.3 -1.8 outer membrane autotransporter compare
Pf6N2E2_2822 -1.3 -5.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3659 -1.3 -7.8 Protein fixF compare
Pf6N2E2_3251 -1.3 -6.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2986 -1.3 -0.9 Transcriptional regulator, LuxR family compare
Pf6N2E2_5024 -1.3 -0.9 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_4762 -1.3 -0.8 Biotin synthesis protein BioH compare
Pf6N2E2_4594 -1.3 -1.5 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_2885 -1.3 -5.6 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_74 -1.3 -0.8 DedD protein compare
Pf6N2E2_5272 -1.3 -0.9 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_5337 -1.3 -10.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_973 -1.3 -1.2 Single-stranded DNA-binding protein compare
Pf6N2E2_4077 -1.3 -0.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_295 -1.3 -0.8 Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6) compare
Pf6N2E2_795 -1.2 -1.1 ABC transporter ATP-binding protein uup compare
Pf6N2E2_1412 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_6093 -1.2 -0.8 hypothetical protein compare
Pf6N2E2_3455 -1.2 -0.8 Integral membrane protein YfiB compare
Pf6N2E2_2121 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_5647 -1.2 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2258 -1.2 -4.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_402 -1.2 -1.1 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_4472 -1.2 -8.2 ABC-type multidrug transport system, permease component compare
Pf6N2E2_4145 -1.2 -1.3 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_4564 -1.2 -3.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_671 -1.2 -1.1 2-methylaconitate racemase compare
Pf6N2E2_4779 -1.2 -1.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_5174 -1.1 -2.3 Glycosyltransferase compare
Pf6N2E2_4181 -1.1 -0.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_2897 -1.1 -5.4 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_958 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_318 -1.1 -0.7 Gluconolactonase (EC 3.1.1.17) compare
Pf6N2E2_2842 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_466 -1.1 -0.8 Nicotinamidase (EC 3.5.1.19) compare
Pf6N2E2_3017 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_472 -1.1 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_1959 -1.1 -0.7 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_1024 -1.1 -1.0 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_4732 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_2716 -1.1 -1.2 FIG00954793: hypothetical protein compare
Pf6N2E2_5496 -1.1 -0.7 FIG00953991: hypothetical protein compare
Pf6N2E2_5411 -1.1 -1.4 FIG00955494: hypothetical protein compare
Pf6N2E2_2064 -1.1 -0.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_1325 -1.1 -1.0 FIG00954773: hypothetical protein compare
Pf6N2E2_2318 -1.1 -9.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_734 -1.1 -0.7 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_3488 -1.1 -1.6 Cu(I)-responsive transcriptional regulator compare
Pf6N2E2_482 -1.1 -0.8 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_3786 -1.1 -3.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_5419 -1.1 -0.7 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_5131 -1.1 -2.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_1396 -1.1 -1.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_3885 -1.1 -1.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_3428 -1.1 -0.7 hypothetical protein compare
Pf6N2E2_443 -1.1 -0.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_453 -1.1 -0.7 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2688 -1.0 -1.4 YD repeat protein compare
Pf6N2E2_2788 -1.0 -0.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_3237 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_6085 -1.0 -0.6 Aha1 domain superfamily compare
Pf6N2E2_2752 -1.0 -2.6 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5097 -1.0 -0.7 FIG00953595: hypothetical protein compare
Pf6N2E2_3015 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_2168 -1.0 -1.0 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf6N2E2_28 -1.0 -0.9 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_4988 -1.0 -2.4 Antiholin-like protein LrgA compare
Pf6N2E2_2778 -1.0 -0.7 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_2320 -1.0 -3.8 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2506 -1.0 -5.4 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5023 -1.0 -1.1 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_1452 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_1028 -1.0 -0.6 Transcriptional regulator, LysR family compare
Pf6N2E2_217 -1.0 -1.1 Signal transduction histidine kinase compare
Pf6N2E2_2476 -1.0 -1.4 Arylesterase precursor (EC 3.1.1.2) compare
Pf6N2E2_5756 -1.0 -0.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_1705 -1.0 -0.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2069 -1.0 -0.7 FIG00953703: hypothetical protein compare
Pf6N2E2_2139 -1.0 -3.0 Paraquat-inducible protein A compare
Pf6N2E2_2849 -1.0 -0.6 Chromosome initiation inhibitor compare
Pf6N2E2_1161 -1.0 -1.9 FIG00961921: hypothetical protein compare
Pf6N2E2_302 -1.0 -4.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3912 -1.0 -0.6 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_4494 -1.0 -0.9 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_4556 -1.0 -0.9 FIG00953078: hypothetical protein compare
Pf6N2E2_2507 -1.0 -3.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2360 -1.0 -1.1 cell invasion protein SipB compare
Pf6N2E2_165 -1.0 -0.6 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_3221 -1.0 -0.6 FIG00352444: hypothetical protein compare
Pf6N2E2_30 -1.0 -1.3 Antisigma transmembrane sensor FpvR compare
Pf6N2E2_3720 -1.0 -0.6 FIG027190: Putative transmembrane protein compare
Pf6N2E2_2073 -1.0 -3.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3679 -1.0 -1.5 Protein involved in catabolism of external DNA compare
Pf6N2E2_1035 -1.0 -0.9 MotA/TolQ/ExbB proton channel family protein compare
Pf6N2E2_5111 -1.0 -0.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_513 -1.0 -1.4 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
Pf6N2E2_1625 -1.0 -0.6 Ferric reductase (1.6.99.14) compare
Pf6N2E2_16 -0.9 -0.4 hypothetical protein compare
Pf6N2E2_4662 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_2246 -0.9 -0.9 Arabinose efflux permease compare
Pf6N2E2_1404 -0.9 -1.1 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_1089 -0.9 -0.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3169 -0.9 -0.6 Membrane proteins related to metalloendopeptidases compare
Pf6N2E2_1875 -0.9 -0.6 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_3810 -0.9 -0.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1905 -0.9 -0.9 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_237 -0.9 -0.6 hypothetical protein compare
Pf6N2E2_3595 -0.9 -0.9 Large protein containing transglutaminase-like domain compare
Pf6N2E2_552 -0.9 -0.6 Uncharacterized protein ImpF compare
Pf6N2E2_193 -0.9 -0.8 hypothetical protein compare
Pf6N2E2_1399 -0.9 -0.6 Transcriptional regulator, LuxR family compare
Pf6N2E2_37 -0.9 -1.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_5720 -0.9 -0.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3663 -0.9 -7.1 Glycosyl transferase compare
Pf6N2E2_2509 -0.9 -2.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4306 -0.9 -1.7 Uncharacterized protein ImpI/VasC compare
Pf6N2E2_5517 -0.9 -0.9 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_55 -0.9 -0.6 Probable hydrolase compare
Pf6N2E2_2692 -0.9 -2.4 RNA polymerase sigma factor RpoE compare
Pf6N2E2_3034 -0.9 -0.6 hypothetical protein compare
Pf6N2E2_3279 -0.9 -0.8 FIG138315: Putative alpha helix protein compare
Pf6N2E2_4631 -0.9 -1.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_2878 -0.9 -1.3 required for 4-hydroxybenzoate and octanoate transport, together with MFP and FUSC proteins (Pf6N2E2_2877, Pf6N2E2_2879) (from data) compare
Pf6N2E2_4672 -0.9 -1.2 FIG00953568: hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Ying_sugar7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_sugar7 across organisms