Experiment set24S389 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Ying_sugar7 rep B; time point 1

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_1647 +7.7 8.3 Maltose/maltodextrin ABC transporter, permease protein MalF compare
Pf6N2E2_1648 +6.5 4.8 Maltose/maltodextrin ABC transporter, permease protein MalG compare
Pf6N2E2_1646 +5.6 6.8 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE compare
Pf6N2E2_1645 +5.3 9.7 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) compare
Pf6N2E2_1649 +4.6 4.5 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) compare
Pf6N2E2_3060 +3.1 4.0 Outer membrane protein H precursor compare
Pf6N2E2_4451 +2.2 17.4 FIG139438: lipoprotein B compare
Pf6N2E2_3753 +1.9 14.5 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_2755 +1.9 2.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2795 +1.7 1.4 putative exported protein compare
Pf6N2E2_2586 +1.5 2.2 Hpt domain protein compare
Pf6N2E2_2473 +1.5 1.0 Major outer membrane lipoprotein I compare
Pf6N2E2_945 +1.5 1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_807 +1.3 3.8 Various polyols ABC transporter, ATP-binding component compare
Pf6N2E2_3667 +1.2 5.1 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2080 +1.1 1.3 hypothetical protein compare
Pf6N2E2_5425 +1.1 1.6 hypothetical protein compare
Pf6N2E2_5691 +1.1 6.9 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_6058 +1.1 7.8 FIG139976: hypothetical protein compare
Pf6N2E2_1162 +1.1 1.7 Transmembrane amino acid efflux protein compare
Pf6N2E2_5052 +1.1 0.5 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_1083 +1.1 0.7 hypothetical protein compare
Pf6N2E2_4397 +1.1 2.5 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_2593 +1.0 5.2 Flagellar M-ring protein FliF compare
Pf6N2E2_6057 +1.0 6.0 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3270 +1.0 4.8 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4187 +1.0 9.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_1099 +1.0 1.7 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_5567 +1.0 1.1 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_4273 +1.0 4.8 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3515 +1.0 6.5 Probable transmembrane protein compare
Pf6N2E2_3791 +1.0 5.6 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2589 +1.0 3.2 Flagellar protein FliJ compare
Pf6N2E2_5134 +1.0 2.0 FIG060329: MOSC domain protein compare
Pf6N2E2_5081 +1.0 2.2 hypothetical protein compare
Pf6N2E2_1074 +1.0 0.7 FIG00953356: hypothetical protein compare
Pf6N2E2_5840 +1.0 2.2 hypothetical protein compare
Pf6N2E2_2597 +0.9 6.0 Flagellar regulatory protein FleQ compare
Pf6N2E2_3713 +0.9 1.3 Acyl carrier protein compare
Pf6N2E2_2474 +0.9 6.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3261 +0.9 7.8 hypothetical protein compare
Pf6N2E2_2933 +0.9 1.6 hypothetical protein compare
Pf6N2E2_1283 +0.9 1.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4153 +0.9 4.9 Sensory box histidine kinase compare
Pf6N2E2_4459 +0.9 0.6 Transcriptional regulator, GntR family compare
Pf6N2E2_2594 +0.9 4.5 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_2636 +0.9 1.2 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3711 +0.8 2.2 FIG018329: 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Pf6N2E2_664 +0.8 0.8 Acetoin catabolism protein X compare
Pf6N2E2_2021 +0.8 4.4 Excinuclease ABC subunit C compare
Pf6N2E2_4268 +0.8 2.0 Pyridoxal kinase (EC 2.7.1.35) compare
Pf6N2E2_3198 +0.8 1.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3373 +0.8 3.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5219 +0.8 4.3 FIG140336: TPR domain protein compare
Pf6N2E2_5677 +0.8 0.7 Carbon storage regulator compare
Pf6N2E2_1808 +0.8 1.9 Transcriptional regulator compare
Pf6N2E2_3793 +0.8 4.2 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Pf6N2E2_4263 +0.8 1.7 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_2592 +0.8 3.3 Flagellar motor switch protein FliG compare
Pf6N2E2_2576 +0.8 5.3 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_3830 +0.8 1.8 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_2633 +0.8 1.3 Nitroreductase family protein compare
Pf6N2E2_3944 +0.8 1.2 Protein of unknown function DUF81 compare
Pf6N2E2_2352 +0.8 2.2 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Pf6N2E2_3635 +0.8 1.2 FIG00953138: hypothetical protein compare
Pf6N2E2_2579 +0.7 3.7 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_2625 +0.7 2.1 Flagellar P-ring protein FlgI compare
Pf6N2E2_2590 +0.7 4.6 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_4423 +0.7 1.3 FIG00953342: hypothetical protein compare
Pf6N2E2_5727 +0.7 3.1 FIG00955360: hypothetical protein compare
Pf6N2E2_69 +0.7 5.4 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_2588 +0.7 0.8 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_3516 +0.7 1.2 Probable transmembrane protein compare
Pf6N2E2_3835 +0.7 2.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4155 +0.7 4.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1014 +0.7 0.9 Nitrate/nitrite transporter compare
Pf6N2E2_2583 +0.7 3.7 Flagellar motor switch protein FliM compare
Pf6N2E2_1860 +0.7 1.4 Ferredoxin, 2Fe-2S compare
Pf6N2E2_114 +0.7 1.1 Polysaccharide biosynthesis protein compare
Pf6N2E2_1935 +0.7 1.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2626 +0.7 4.5 Flagellar L-ring protein FlgH compare
Pf6N2E2_3883 +0.7 2.3 C4-dicarboxylate transport transcriptional regulatory protein compare
Pf6N2E2_1984 +0.7 1.1 probable exported protein STY4558 compare
Pf6N2E2_2857 +0.7 1.1 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_2624 +0.7 3.4 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_5950 +0.7 2.1 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2119 +0.6 2.1 hypothetical protein compare
Pf6N2E2_4903 +0.6 2.5 FIG003003: hypothetical protein compare
Pf6N2E2_5246 +0.6 2.0 FIG00955938: hypothetical protein compare
Pf6N2E2_70 +0.6 2.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3108 +0.6 0.8 FIG00953405: hypothetical protein compare
Pf6N2E2_2577 +0.6 3.6 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_3941 +0.6 3.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3039 +0.6 3.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2158 +0.6 1.8 Signal transduction histidine kinase compare
Pf6N2E2_1779 +0.6 1.2 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_2858 +0.6 1.3 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_178 +0.6 0.4 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3499 +0.6 0.9 Permeases of the major facilitator superfamily compare
Pf6N2E2_5062 +0.6 2.4 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf6N2E2_399 +0.6 1.5 Iron siderophore sensor protein compare
Pf6N2E2_2534 +0.6 0.8 Cell division protein BolA compare
Pf6N2E2_4601 +0.6 0.8 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_1584 +0.6 0.9 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_5646 +0.6 1.2 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_54 +0.6 1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_754 +0.6 0.4 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_384 +0.6 2.4 Glycine cleavage system transcriptional activator compare
Pf6N2E2_2312 +0.6 2.0 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_433 +0.6 2.3 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Pf6N2E2_414 +0.6 0.8 Chemotaxis protein CheD compare
Pf6N2E2_5468 +0.6 1.3 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_2201 +0.6 2.3 Transmembrane regulator protein PrtR compare
Pf6N2E2_3719 +0.6 2.1 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein compare
Pf6N2E2_2564 +0.6 2.7 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_493 +0.6 1.1 YD repeat protein compare
Pf6N2E2_3872 +0.6 0.5 hypothetical protein compare
Pf6N2E2_2267 +0.6 2.1 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_5088 +0.6 0.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1516 +0.6 1.4 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_2575 +0.6 3.0 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_3132 +0.6 0.6 FIG00954548: hypothetical protein compare
Pf6N2E2_1712 +0.6 0.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2471 +0.6 4.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5183 +0.5 4.5 Paraquat-inducible protein B compare
Pf6N2E2_5584 +0.5 0.5 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_5560 +0.5 1.7 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_4611 +0.5 1.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2934 +0.5 1.0 lipoprotein, putative compare
Pf6N2E2_4343 +0.5 2.2 Phosphoprotein phosphatase PppA compare
Pf6N2E2_2 +0.5 1.4 FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis compare
Pf6N2E2_4640 +0.5 0.4 hypothetical protein compare
Pf6N2E2_2344 +0.5 3.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5830 +0.5 1.0 FIG00960829: hypothetical protein compare
Pf6N2E2_3478 +0.5 1.7 Adenosine deaminase (EC 3.5.4.4) compare
Pf6N2E2_3546 +0.5 1.8 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_3718 +0.5 2.5 Putative histidine ammonia-lyase protein compare
Pf6N2E2_568 +0.5 1.1 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) compare
Pf6N2E2_3370 +0.5 3.2 DNA repair protein RecN compare
Pf6N2E2_1442 +0.5 2.2 Transcriptional regulators of sugar metabolism compare
Pf6N2E2_1213 +0.5 0.8 hypothetical protein compare
Pf6N2E2_1886 +0.5 1.1 hypothetical protein compare
Pf6N2E2_5044 +0.5 1.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1654 +0.5 0.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_6084 +0.5 1.5 FIG00638667: hypothetical protein compare
Pf6N2E2_1148 +0.5 0.6 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_6071 +0.5 1.4 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf6N2E2_4362 +0.5 0.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5520 +0.5 3.1 Sensory box histidine kinase compare
Pf6N2E2_3986 +0.5 1.7 PROBABLE REMNANT OF A TRANSPOSASE GENE PROTEIN compare
Pf6N2E2_2573 +0.5 2.7 RNA polymerase sigma factor for flagellar operon compare
Pf6N2E2_5697 +0.5 4.2 Flagellar hook protein FlgE compare
Pf6N2E2_841 +0.5 0.9 hypothetical protein compare
Pf6N2E2_6022 +0.5 0.5 StbE replicon stabilization toxin compare
Pf6N2E2_5015 +0.5 0.9 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_4521 +0.5 1.2 hypothetical protein compare
Pf6N2E2_692 +0.5 1.0 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_3338 +0.5 0.7 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_6064 +0.5 2.3 2-methylaconitate isomerase compare
Pf6N2E2_1743 +0.5 0.9 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_4072 +0.5 2.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3276 +0.5 1.6 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_4984 +0.5 1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4888 +0.5 4.3 Excinuclease ABC subunit A compare
Pf6N2E2_4449 +0.5 2.5 Sigma cross-reacting protein 27A compare
Pf6N2E2_3844 +0.5 0.6 hypothetical protein compare
Pf6N2E2_3666 +0.5 2.9 InaA protein compare
Pf6N2E2_4025 +0.5 0.5 hypothetical protein compare
Pf6N2E2_1158 +0.5 1.6 Cyn operon transcriptional activator compare
Pf6N2E2_3466 +0.5 0.7 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_4404 +0.5 2.3 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein compare
Pf6N2E2_4994 +0.5 1.8 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_3040 +0.5 2.7 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_5460 +0.5 1.0 Phage protein compare
Pf6N2E2_6100 +0.5 0.6 tRNA-Val-TAC compare
Pf6N2E2_4516 +0.5 3.1 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
Pf6N2E2_3206 +0.5 0.4 hypothetical protein compare
Pf6N2E2_3715 +0.5 2.3 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-) compare
Pf6N2E2_3136 +0.5 2.1 NADH:flavin oxidoreductases, Old Yellow Enzyme family compare
Pf6N2E2_149 +0.5 2.9 Inner membrane component of tripartite multidrug resistance system compare
Pf6N2E2_2357 +0.5 1.5 Invasion protein iagA compare
Pf6N2E2_5452 +0.5 0.8 hypothetical protein compare
Pf6N2E2_136 +0.5 0.7 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_97 +0.5 1.0 putataive branched-chain amino acid transport protein AzlC compare
Pf6N2E2_5705 +0.5 2.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_438 +0.5 2.3 hypothetical protein compare
Pf6N2E2_2580 +0.5 0.7 Flagellar biosynthesis protein FliP compare
Pf6N2E2_629 +0.5 1.2 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_2262 +0.5 1.6 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_5785 +0.5 1.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2831 +0.5 1.0 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) compare
Pf6N2E2_3106 +0.5 1.0 hypothetical protein compare
Pf6N2E2_426 +0.5 1.0 Arsenate reductase (EC 1.20.4.1) compare
Pf6N2E2_3539 +0.5 0.5 FIG00955840: hypothetical protein compare
Pf6N2E2_3019 +0.5 1.2 FIG00954559: hypothetical protein compare
Pf6N2E2_116 +0.5 0.8 Glycosyltransferase compare
Pf6N2E2_2640 +0.5 0.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2563 +0.4 3.2 FIG00953562: hypothetical protein compare
Pf6N2E2_988 +0.4 1.2 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_4338 +0.4 1.7 Type VI secretion lipoprotein/VasD compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Ying_sugar7 in Pseudomonas fluorescens FW300-N2E2

For carbon source Ying_sugar7 across organisms