Experiment set24IT051 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-tyrosine disodium salt carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PFLU_RS04150 -4.5 -20.5 DUF1043 family protein compare
PFLU_RS20580 -4.3 -15.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS05085 -4.3 -17.2 homogentisate 1,2-dioxygenase compare
PFLU_RS14715 -4.1 -23.9 protein-glutamate O-methyltransferase CheR compare
PFLU_RS05095 -3.9 -8.3 maleylacetoacetate isomerase conserved
PFLU_RS20565 -3.8 -17.3 3-isopropylmalate dehydrogenase compare
PFLU_RS28535 -3.7 -16.6 dihydroxy-acid dehydratase compare
PFLU_RS05090 -3.7 -19.6 fumarylacetoacetase compare
PFLU_RS24765 -3.7 -23.6 2-isopropylmalate synthase compare
PFLU_RS25640 -3.6 -14.4 ketol-acid reductoisomerase compare
PFLU_RS20575 -3.4 -9.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS14610 -3.3 -14.5 4-hydroxyphenylpyruvate dioxygenase conserved
PFLU_RS01605 -3.3 -9.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS00435 -3.2 -22.7 PAS domain-containing protein compare
PFLU_RS21880 -3.2 -15.1 aspartate/tyrosine/aromatic aminotransferase conserved
PFLU_RS25645 -3.2 -3.7 acetolactate synthase small subunit compare
PFLU_RS01620 -3.2 -8.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS04470 -3.2 -13.2 histidinol dehydrogenase compare
PFLU_RS04465 -3.0 -11.3 ATP phosphoribosyltransferase compare
PFLU_RS20540 -2.9 -12.7 phosphoribosylanthranilate isomerase compare
PFLU_RS09055 -2.9 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS21865 -2.8 -17.4 sigma-54-dependent phenylalanine hydroxylase transcriptional regulator PhhR conserved
PFLU_RS27365 -2.8 -12.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS18755 -2.8 -11.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS02590 -2.8 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28695 -2.7 -8.6 phosphoglycerate dehydrogenase compare
PFLU_RS06645 -2.7 -15.9 branched-chain amino acid ABC transporter substrate-binding protein compare
PFLU_RS01900 -2.7 -8.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS12980 -2.7 -10.7 nitrite/sulfite reductase compare
PFLU_RS02490 -2.6 -13.6 phosphoserine phosphatase SerB compare
PFLU_RS06635 -2.6 -16.7 high-affinity branched-chain amino acid ABC transporter permease LivM compare
PFLU_RS27370 -2.6 -14.0 anthranilate phosphoribosyltransferase compare
PFLU_RS00180 -2.6 -7.7 tryptophan synthase subunit beta compare
PFLU_RS00175 -2.6 -9.0 tryptophan synthase subunit alpha compare
PFLU_RS18940 -2.6 -13.2 acyl-CoA dehydrogenase compare
PFLU_RS10325 -2.6 -11.6 MFS transporter compare
PFLU_RS04315 -2.6 -8.0 rod shape-determining protein MreD compare
PFLU_RS06320 -2.5 -6.0 OmpH family outer membrane protein compare
PFLU_RS06640 -2.5 -16.4 high-affinity branched-chain amino acid ABC transporter permease LivH compare
PFLU_RS10575 -2.5 -12.9 acetyl-CoA C-acetyltransferase conserved
PFLU_RS27685 -2.4 -14.9 malate synthase G compare
PFLU_RS06625 -2.4 -7.7 ABC transporter ATP-binding protein compare
PFLU_RS12975 -2.3 -5.7 DUF934 domain-containing protein compare
PFLU_RS07235 -2.2 -4.8 sigma factor AlgU negative regulatory protein compare
PFLU_RS22740 -2.2 -5.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS20625 -2.2 -4.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS06055 -2.2 -2.4 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS18505 -2.1 -9.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS28655 -2.1 -12.8 HAD family hydrolase compare
PFLU_RS22095 -2.1 -15.1 GTP diphosphokinase compare
PFLU_RS20515 -2.1 -6.6 amidophosphoribosyltransferase compare
PFLU_RS18665 -2.1 -4.3 NADH-quinone oxidoreductase subunit L compare
PFLU_RS01995 -2.1 -11.4 malate dehydrogenase compare
PFLU_RS25715 -2.0 -9.2 RNA polymerase-binding protein DksA compare
PFLU_RS29095 -2.0 -16.4 polyphosphate kinase 1 compare
PFLU_RS26595 -2.0 -3.2 lipoprotein compare
PFLU_RS06630 -2.0 -4.5 ABC transporter ATP-binding protein compare
PFLU_RS18620 -2.0 -6.4 NADH-quinone oxidoreductase subunit B compare
PFLU_RS01610 -2.0 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS00695 -2.0 -2.5 DUF2789 domain-containing protein compare
PFLU_RS28165 -1.9 -10.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS28390 -1.9 -9.5 methionine biosynthesis protein MetW compare
PFLU_RS28385 -1.9 -12.3 homoserine O-acetyltransferase compare
PFLU_RS25800 -1.8 -8.4 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS08675 -1.8 -5.0 DsbE family thiol:disulfide interchange protein compare
PFLU_RS21825 -1.8 -14.5 ketoacyl-ACP synthase III compare
PFLU_RS01625 -1.8 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS25750 -1.8 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS10585 -1.7 -5.8 CoA transferase subunit A compare
PFLU_RS27475 -1.7 -5.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS10580 -1.7 -9.0 CoA transferase subunit B conserved
PFLU_RS18675 -1.7 -3.5 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS26700 -1.7 -8.6 LrgB family protein compare
PFLU_RS26705 -1.7 -7.4 murein hydrolase transporter LrgA compare
PFLU_RS08655 -1.7 -4.7 heme ABC transporter permease compare
PFLU_RS25920 -1.7 -4.5 outer membrane protein assembly factor BamE compare
PFLU_RS21870 -1.7 -7.6 phenylalanine 4-monooxygenase conserved
PFLU_RS25585 -1.7 -1.6 exodeoxyribonuclease V subunit alpha compare
PFLU_RS22105 -1.7 -4.8 cysteine synthase CysM compare
PFLU_RS18625 -1.7 -6.1 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS12580 -1.6 -8.4 MurR/RpiR family transcriptional regulator compare
PFLU_RS02790 -1.6 -3.1 TetR family transcriptional regulator compare
PFLU_RS05655 -1.6 -3.0 DeoR/GlpR family transcriptional regulator compare
PFLU_RS00040 -1.6 -14.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS04415 -1.5 -4.9 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS16935 -1.5 -3.8 CoA ester lyase compare
PFLU_RS21995 -1.5 -4.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS19375 -1.5 -7.9 branched-chain amino acid aminotransferase compare
PFLU_RS23325 -1.5 -9.6 GlxA family transcriptional regulator compare
PFLU_RS22070 -1.5 -3.4 phosphoribosylglycinamide formyltransferase compare
PFLU_RS18670 -1.5 -2.3 NADH-quinone oxidoreductase subunit M compare
PFLU_RS00445 -1.5 -4.5 hypothetical protein compare
PFLU_RS13540 -1.5 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS04220 -1.5 -6.3 FadR family transcriptional regulator compare
PFLU_RS08670 -1.5 -6.3 heme lyase CcmF/NrfE family subunit compare
PFLU_RS08660 -1.5 -2.8 heme exporter protein CcmD compare
PFLU_RS20510 -1.5 -10.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS26640 -1.5 -9.3 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS13005 -1.5 -13.3 fatty acid cis/trans isomerase compare
PFLU_RS08650 -1.4 -2.2 heme exporter protein CcmB compare
PFLU_RS18655 -1.4 -2.2 NADH-quinone oxidoreductase subunit J compare
PFLU_RS04835 -1.4 -1.8 hypothetical protein compare
PFLU_RS18555 -1.4 -8.0 ATP-dependent Clp protease adapter ClpS compare
PFLU_RS18640 -1.4 -3.7 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS08665 -1.4 -4.3 cytochrome c maturation protein CcmE compare
PFLU_RS19120 -1.4 -4.2 MarR family transcriptional regulator compare
PFLU_RS25940 -1.4 -10.4 FCD domain-containing protein compare
PFLU_RS18645 -1.4 -2.6 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS19170 -1.4 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS25360 -1.4 -6.3 glutamate 5-kinase compare
PFLU_RS17060 -1.4 -2.3 monooxygenase compare
PFLU_RS22600 -1.4 -3.0 RNA polymerase sigma factor SigX compare
PFLU_RS18550 -1.4 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS27300 -1.3 -12.0 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS04210 -1.3 -9.4 stringent starvation protein A compare
PFLU_RS07245 -1.3 -7.3 DegQ family serine endoprotease compare
PFLU_RS14550 -1.3 -9.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS25510 -1.3 -9.0 amino acid permease compare
PFLU_RS21740 -1.3 -5.5 Hpt domain-containing protein compare
PFLU_RS03555 -1.3 -1.3 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS11525 -1.3 -4.3 GntR family transcriptional regulator compare
PFLU_RS20405 -1.3 -5.1 carbon storage regulator CsrA compare
PFLU_RS25730 -1.3 -7.2 PAS domain S-box protein compare
PFLU_RS06730 -1.3 -7.5 CoA-transferase subunit beta compare
PFLU_RS31825 -1.2 -5.0 hypothetical protein compare
PFLU_RS23045 -1.2 -4.4 beta-ketoacyl-ACP synthase II compare
PFLU_RS23885 -1.2 -3.4 transposase compare
PFLU_RS28690 -1.2 -8.4 FAD-binding oxidoreductase compare
PFLU_RS02690 -1.2 -2.9 hypothetical protein compare
PFLU_RS10430 -1.2 -4.0 peptidase compare
PFLU_RS19165 -1.2 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS02280 -1.2 -8.2 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase compare
PFLU_RS26660 -1.2 -3.2 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS23730 -1.2 -8.3 MurR/RpiR family transcriptional regulator compare
PFLU_RS04935 -1.2 -4.9 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS14050 -1.2 -1.6 hypothetical protein compare
PFLU_RS29555 -1.1 -8.1 HDOD domain-containing protein compare
PFLU_RS03665 -1.1 -3.7 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS03765 -1.1 -7.3 sulfate adenylyltransferase subunit CysD compare
PFLU_RS18615 -1.1 -2.3 NADH-quinone oxidoreductase subunit A compare
PFLU_RS00285 -1.1 -7.7 hypothetical protein compare
PFLU_RS04930 -1.1 -7.6 PhoH family protein compare
PFLU_RS31095 -1.1 -6.5 hypothetical protein compare
PFLU_RS06765 -1.1 -4.2 4-carboxymuconolactone decarboxylase compare
PFLU_RS18530 -1.1 -3.3 DNA translocase FtsK compare
PFLU_RS02565 -1.1 -2.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS15200 -1.1 -2.8 ABC transporter substrate-binding protein compare
PFLU_RS07725 -1.1 -2.0 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS06755 -1.1 -6.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PFLU_RS28645 -1.1 -7.5 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS28965 -1.1 -6.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS06740 -1.1 -6.5 protocatechuate 3,4-dioxygenase subunit beta compare
PFLU_RS04475 -1.0 -6.7 histidinol-phosphate transaminase compare
PFLU_RS22635 -1.0 -8.2 kinase/pyrophosphorylase compare
PFLU_RS02275 -1.0 -1.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS06725 -1.0 -5.5 CoA transferase subunit A compare
PFLU_RS30165 -1.0 -5.2 ParA family protein compare
PFLU_RS06760 -1.0 -6.1 3-oxoadipate enol-lactonase compare
PFLU_RS31675 -1.0 -1.7 hypothetical protein compare
PFLU_RS16020 -1.0 -5.3 flavin oxidoreductase compare
PFLU_RS24085 -1.0 -2.4 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS07640 -1.0 -6.3 universal stress protein compare
PFLU_RS04330 -1.0 -8.2 TIGR02099 family protein compare
PFLU_RS24095 -1.0 -1.9 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS21580 -1.0 -2.2 MOSC domain-containing protein compare
PFLU_RS24160 -1.0 -4.2 HAMP domain-containing protein compare
PFLU_RS11620 -1.0 -6.7 FadR family transcriptional regulator compare
PFLU_RS22535 -1.0 -8.5 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS29775 -1.0 -7.4 MFS transporter compare
PFLU_RS18635 -1.0 -2.2 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS00190 -1.0 -2.5 DUF883 domain-containing protein compare
PFLU_RS11055 -1.0 -3.3 hypothetical protein compare
PFLU_RS17750 -1.0 -2.6 pirin family protein compare
PFLU_RS30645 -1.0 -3.2 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS07430 -0.9 -6.4 helix-turn-helix domain-containing protein compare
PFLU_RS04715 -0.9 -4.1 D-alanine--D-alanine ligase compare
PFLU_RS04325 -0.9 -6.7 ribonuclease G compare
PFLU_RS12715 -0.9 -1.5 fumarylacetoacetate hydrolase family protein compare
PFLU_RS22725 -0.9 -2.0 transcriptional regulator compare
PFLU_RS19160 -0.9 -6.3 endopeptidase La compare
PFLU_RS23380 -0.9 -1.7 HAD-IB family hydrolase compare
PFLU_RS24805 -0.9 -2.8 helix-turn-helix domain-containing protein compare
PFLU_RS05750 -0.9 -2.0 methionine--tRNA ligase compare
PFLU_RS22520 -0.9 -1.7 GntR family transcriptional regulator compare
PFLU_RS31800 -0.9 -1.5 hypothetical protein compare
PFLU_RS22605 -0.9 -4.2 mechanosensitive ion channel compare
PFLU_RS04435 -0.9 -4.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS21910 -0.9 -7.8 BamA/TamA family outer membrane protein compare
PFLU_RS04445 -0.9 -3.9 ABC transporter substrate-binding protein compare
PFLU_RS20040 -0.9 -2.3 GntR family transcriptional regulator compare
PFLU_RS13665 -0.9 -1.6 MarR family transcriptional regulator compare
PFLU_RS07435 -0.9 -6.1 4-hydroxybenzoate 3-monooxygenase compare
PFLU_RS11325 -0.9 -3.2 helix-turn-helix domain-containing protein compare
PFLU_RS01895 -0.9 -3.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS21535 -0.9 -5.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS00415 -0.9 -1.1 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS08445 -0.9 -3.8 MarR family transcriptional regulator compare
PFLU_RS00530 -0.9 -1.6 DUF2388 domain-containing protein compare
PFLU_RS23310 -0.9 -5.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS03770 -0.8 -5.9 sulfate adenylyltransferase subunit CysN compare


Specific Phenotypes

For 21 genes in this experiment

For carbon source L-tyrosine disodium salt in Pseudomonas fluorescens SBW25-INTG

For carbon source L-tyrosine disodium salt across organisms