Experiment set24IT014 for Pseudomonas fluorescens SBW25-INTG

Compare to:

L-Proline carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PFLU_RS02230 -4.5 -28.8 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase conserved
PFLU_RS14715 -3.7 -20.3 protein-glutamate O-methyltransferase CheR compare
PFLU_RS04150 -3.5 -26.6 DUF1043 family protein compare
PFLU_RS02590 -3.0 -10.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28655 -3.0 -14.3 HAD family hydrolase compare
PFLU_RS28385 -2.9 -16.3 homoserine O-acetyltransferase compare
PFLU_RS04465 -2.9 -11.2 ATP phosphoribosyltransferase compare
PFLU_RS20575 -2.9 -7.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS09055 -2.8 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS28695 -2.7 -7.1 phosphoglycerate dehydrogenase compare
PFLU_RS01620 -2.7 -9.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20580 -2.7 -14.8 3-isopropylmalate dehydratase large subunit compare
PFLU_RS25640 -2.7 -14.5 ketol-acid reductoisomerase compare
PFLU_RS04315 -2.6 -10.5 rod shape-determining protein MreD compare
PFLU_RS20565 -2.6 -15.5 3-isopropylmalate dehydrogenase compare
PFLU_RS01605 -2.5 -9.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS04470 -2.5 -12.6 histidinol dehydrogenase compare
PFLU_RS00175 -2.5 -9.6 tryptophan synthase subunit alpha compare
PFLU_RS01910 -2.5 -2.3 sterol-binding protein compare
PFLU_RS00435 -2.5 -17.9 PAS domain-containing protein compare
PFLU_RS27365 -2.5 -10.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28535 -2.4 -15.6 dihydroxy-acid dehydratase compare
PFLU_RS20515 -2.4 -7.2 amidophosphoribosyltransferase compare
PFLU_RS27370 -2.4 -13.2 anthranilate phosphoribosyltransferase compare
PFLU_RS24765 -2.3 -17.6 2-isopropylmalate synthase compare
PFLU_RS28390 -2.3 -11.6 methionine biosynthesis protein MetW compare
PFLU_RS20510 -2.3 -13.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS01900 -2.3 -8.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS20540 -2.3 -11.5 phosphoribosylanthranilate isomerase compare
PFLU_RS02490 -2.3 -12.5 phosphoserine phosphatase SerB compare
PFLU_RS00180 -2.2 -8.2 tryptophan synthase subunit beta compare
PFLU_RS06320 -2.2 -5.0 OmpH family outer membrane protein compare
PFLU_RS08675 -2.2 -5.2 DsbE family thiol:disulfide interchange protein compare
PFLU_RS07235 -2.1 -4.1 sigma factor AlgU negative regulatory protein compare
PFLU_RS25645 -2.1 -3.1 acetolactate synthase small subunit compare
PFLU_RS08670 -2.0 -8.0 heme lyase CcmF/NrfE family subunit compare
PFLU_RS01625 -1.9 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS08650 -1.9 -3.3 heme exporter protein CcmB compare
PFLU_RS22105 -1.9 -5.1 cysteine synthase CysM compare
PFLU_RS01610 -1.9 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS22600 -1.9 -3.2 RNA polymerase sigma factor SigX compare
PFLU_RS08655 -1.8 -5.5 heme ABC transporter permease compare
PFLU_RS08665 -1.8 -5.9 cytochrome c maturation protein CcmE compare
PFLU_RS18505 -1.8 -8.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS28165 -1.8 -10.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS21825 -1.8 -13.9 ketoacyl-ACP synthase III compare
PFLU_RS01995 -1.8 -10.6 malate dehydrogenase compare
PFLU_RS12975 -1.7 -4.7 DUF934 domain-containing protein compare
PFLU_RS26595 -1.6 -3.2 lipoprotein compare
PFLU_RS23045 -1.6 -5.2 beta-ketoacyl-ACP synthase II compare
PFLU_RS13005 -1.5 -13.4 fatty acid cis/trans isomerase compare
PFLU_RS18755 -1.5 -7.6 TetR/AcrR family transcriptional regulator compare
PFLU_RS04210 -1.5 -9.3 stringent starvation protein A compare
PFLU_RS23220 -1.5 -2.8 tRNA-Arg compare
PFLU_RS19015 -1.5 -7.3 anti-sigma factor compare
PFLU_RS04835 -1.4 -1.9 hypothetical protein compare
PFLU_RS08660 -1.4 -2.5 heme exporter protein CcmD compare
PFLU_RS06055 -1.4 -1.4 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS00040 -1.4 -12.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS08165 -1.4 -2.2 acyl carrier protein compare
PFLU_RS00070 -1.4 -3.7 tetratricopeptide repeat protein compare
PFLU_RS02565 -1.4 -3.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS12980 -1.4 -7.2 nitrite/sulfite reductase compare
PFLU_RS27300 -1.4 -12.4 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS04435 -1.3 -5.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS25585 -1.3 -1.9 exodeoxyribonuclease V subunit alpha compare
PFLU_RS25920 -1.3 -3.7 outer membrane protein assembly factor BamE compare
PFLU_RS23380 -1.3 -2.1 HAD-IB family hydrolase compare
PFLU_RS26640 -1.3 -8.8 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS25760 -1.3 -3.7 glucose-6-phosphate isomerase compare
PFLU_RS13845 -1.3 -3.6 hypothetical protein compare
PFLU_RS25815 -1.3 -1.6 transcription termination/antitermination protein NusA compare
PFLU_RS18410 -1.3 -3.3 response regulator compare
PFLU_RS18665 -1.3 -3.7 NADH-quinone oxidoreductase subunit L compare
PFLU_RS10325 -1.2 -7.4 MFS transporter compare
PFLU_RS14550 -1.2 -6.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS04415 -1.2 -3.4 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS28645 -1.2 -8.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS25730 -1.2 -7.0 PAS domain S-box protein compare
PFLU_RS12650 -1.2 -3.2 hypothetical protein compare
PFLU_RS28315 -1.2 -1.3 response regulator compare
PFLU_RS05890 -1.2 -1.9 recombination regulator RecX compare
PFLU_RS10430 -1.2 -4.2 peptidase compare
PFLU_RS10765 -1.1 -7.4 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS22605 -1.1 -5.5 mechanosensitive ion channel compare
PFLU_RS23065 -1.1 -6.2 phosphate acyltransferase PlsX compare
PFLU_RS18675 -1.1 -2.8 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS31825 -1.1 -5.5 hypothetical protein compare
PFLU_RS29310 -1.1 -1.0 accessory factor UbiK family protein compare
PFLU_RS19050 -1.1 -3.4 spore coat protein U domain-containing protein compare
PFLU_RS26660 -1.1 -3.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS13715 -1.1 -1.5 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS22070 -1.1 -2.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS22535 -1.0 -8.9 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS25595 -1.0 -1.4 exodeoxyribonuclease V subunit gamma compare
PFLU_RS19935 -1.0 -2.1 type II secretion system protein GspF compare
PFLU_RS24805 -1.0 -3.1 helix-turn-helix domain-containing protein compare
PFLU_RS14440 -1.0 -1.3 hypothetical protein compare
PFLU_RS00445 -1.0 -2.7 hypothetical protein compare
PFLU_RS27640 -1.0 -1.8 alpha/beta fold hydrolase compare
PFLU_RS08575 -1.0 -2.1 hypothetical protein compare
PFLU_RS27650 -1.0 -7.3 biotin synthase BioB compare
PFLU_RS00415 -1.0 -1.2 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS13665 -1.0 -1.5 MarR family transcriptional regulator compare
PFLU_RS20970 -1.0 -2.0 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS25715 -1.0 -5.7 RNA polymerase-binding protein DksA compare
PFLU_RS21910 -0.9 -8.4 BamA/TamA family outer membrane protein compare
PFLU_RS05910 -0.9 -1.6 response regulator transcription factor compare
PFLU_RS30165 -0.9 -4.7 ParA family protein compare
PFLU_RS05885 -0.9 -3.1 recombinase RecA compare
PFLU_RS04445 -0.9 -4.0 ABC transporter substrate-binding protein compare
PFLU_RS16390 -0.9 -1.8 DUF411 domain-containing protein compare
PFLU_RS03585 -0.9 -2.2 hypothetical protein compare
PFLU_RS01675 -0.9 -2.7 tRNA (cytidine(34)-2'-O)-methyltransferase compare
PFLU_RS29095 -0.9 -7.9 polyphosphate kinase 1 compare
PFLU_RS18940 -0.9 -5.3 acyl-CoA dehydrogenase compare
PFLU_RS29290 -0.9 -2.2 hypothetical protein compare
PFLU_RS12685 -0.9 -3.2 hypothetical protein compare
PFLU_RS01615 -0.9 -3.4 DUF2164 domain-containing protein compare
PFLU_RS22740 -0.9 -3.3 phosphoadenylyl-sulfate reductase compare
PFLU_RS20040 -0.9 -2.8 GntR family transcriptional regulator compare
PFLU_RS04070 -0.9 -1.8 peptide chain release factor 3 compare
PFLU_RS04430 -0.8 -4.2 ATP-binding cassette domain-containing protein compare
PFLU_RS00695 -0.8 -1.6 DUF2789 domain-containing protein compare
PFLU_RS31425 -0.8 -1.0 hypothetical protein compare
PFLU_RS13765 -0.8 -1.7 hypothetical protein compare
PFLU_RS17750 -0.8 -0.9 pirin family protein compare
PFLU_RS05655 -0.8 -1.8 DeoR/GlpR family transcriptional regulator compare
PFLU_RS14430 -0.8 -1.4 arsenate reductase ArsC compare
PFLU_RS02275 -0.8 -1.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS23885 -0.8 -1.9 transposase compare
PFLU_RS30555 -0.8 -1.5 hypothetical protein compare
PFLU_RS24025 -0.8 -5.6 quinolinate synthase NadA compare
PFLU_RS22825 -0.8 -6.6 1-acylglycerol-3-phosphate O-acyltransferase compare
PFLU_RS17545 -0.8 -1.1 DUF465 domain-containing protein compare
PFLU_RS19855 -0.8 -1.0 DUF4398 domain-containing protein compare
PFLU_RS31095 -0.8 -4.5 hypothetical protein compare
PFLU_RS31780 -0.7 -1.2 hypothetical protein compare
PFLU_RS02215 -0.7 -1.9 hypothetical protein compare
PFLU_RS16580 -0.7 -2.0 hypothetical protein compare
PFLU_RS15200 -0.7 -2.0 ABC transporter substrate-binding protein compare
PFLU_RS03875 -0.7 -6.1 peptidoglycan editing factor PgeF compare
PFLU_RS03675 -0.7 -5.5 acyloxyacyl hydrolase compare
PFLU_RS18530 -0.7 -2.6 DNA translocase FtsK compare
PFLU_RS24555 -0.7 -5.8 thioredoxin fold domain-containing protein compare
PFLU_RS07785 -0.7 -4.4 VacJ family lipoprotein compare
PFLU_RS09305 -0.7 -5.5 hypothetical protein compare
PFLU_RS22725 -0.7 -1.7 transcriptional regulator compare
PFLU_RS25210 -0.7 -2.7 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS07275 -0.7 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS13120 -0.7 -1.2 hypothetical protein compare
PFLU_RS25190 -0.7 -1.5 hypothetical protein compare
PFLU_RS22095 -0.7 -5.8 GTP diphosphokinase compare
PFLU_RS29880 -0.7 -5.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS23185 -0.7 -5.2 protein-glutamate O-methyltransferase CheR compare
PFLU_RS31755 -0.7 -1.3 hypothetical protein compare
PFLU_RS13640 -0.7 -1.8 isochorismatase family protein compare
PFLU_RS18645 -0.7 -1.6 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS23175 -0.7 -2.9 flagellar basal body rod protein FlgC compare
PFLU_RS31290 -0.7 -1.6 EamA family transporter compare
PFLU_RS15910 -0.7 -1.2 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS20765 -0.7 -1.7 hypothetical protein compare
PFLU_RS04330 -0.7 -5.7 TIGR02099 family protein compare
PFLU_RS07565 -0.7 -3.7 biotin-dependent carboxyltransferase compare
PFLU_RS21740 -0.7 -3.2 Hpt domain-containing protein compare
PFLU_RS12260 -0.7 -0.9 hypothetical protein compare
PFLU_RS21980 -0.7 -2.3 MarR family transcriptional regulator compare
PFLU_RS11415 -0.7 -1.8 protein glxC compare
PFLU_RS16935 -0.7 -2.1 CoA ester lyase compare
PFLU_RS30105 -0.6 -1.5 DeoR family transcriptional regulator compare
PFLU_RS29400 -0.6 -1.2 DUF1127 domain-containing protein compare
PFLU_RS04440 -0.6 -4.1 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS05540 -0.6 -5.2 LysR family transcriptional regulator compare
PFLU_RS24095 -0.6 -1.3 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS29295 -0.6 -2.2 YjbQ family protein compare
PFLU_RS30520 -0.6 -3.3 ketoacyl-ACP synthase III compare
PFLU_RS02730 -0.6 -5.4 branched-chain amino acid ABC transporter permease compare
PFLU_RS15970 -0.6 -2.4 DUF861 domain-containing protein compare
PFLU_RS03765 -0.6 -4.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS00535 -0.6 -1.3 DUF1127 domain-containing protein compare
PFLU_RS25800 -0.6 -3.6 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS28690 -0.6 -4.8 FAD-binding oxidoreductase compare
PFLU_RS02745 -0.6 -3.8 ABC transporter ATP-binding protein compare
PFLU_RS03720 -0.6 -3.7 MerR family transcriptional regulator compare
PFLU_RS21995 -0.6 -1.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS16785 -0.6 -1.5 GAF domain-containing protein compare
PFLU_RS16600 -0.6 -2.9 VOC family protein compare
PFLU_RS11875 -0.6 -2.7 general secretion pathway protein GspK compare
PFLU_RS13580 -0.6 -2.2 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS30030 -0.6 -0.9 membrane protein compare
PFLU_RS11105 -0.6 -2.6 hypothetical protein compare
PFLU_RS29195 -0.6 -2.8 heme biosynthesis protein HemY compare
PFLU_RS11685 -0.6 -1.8 AraC family transcriptional regulator compare
PFLU_RS29595 -0.6 -3.8 type VI secretion system-associated protein TagF compare
PFLU_RS29755 -0.6 -4.5 phosphate ABC transporter ATP-binding protein compare
PFLU_RS23445 -0.6 -1.9 DUF1003 domain-containing protein compare
PFLU_RS22400 -0.6 -2.0 adenine phosphoribosyltransferase compare
PFLU_RS15755 -0.6 -1.2 type II secretion system protein M compare
PFLU_RS21770 -0.6 -3.5 flagellar motor switch protein FliG compare
PFLU_RS29875 -0.6 -5.0 oxaloacetate decarboxylase subunit alpha compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Proline in Pseudomonas fluorescens SBW25-INTG

For carbon source L-Proline across organisms