Experiment set23IT070 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -7.0 -4.8 imidazole glycerol phosphate synthase compare
BPHYT_RS33835 -6.8 -4.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17685 -6.5 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS03150 -6.4 -6.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17400 -6.3 -6.1 anthranilate phosphoribosyltransferase compare
BPHYT_RS17680 -6.2 -4.3 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17670 -6.1 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS14915 -6.1 -4.2 phosphoserine aminotransferase compare
BPHYT_RS14275 -6.0 -2.4 hypothetical protein compare
BPHYT_RS12845 -5.9 -13.3 ATPase compare
BPHYT_RS17675 -5.9 -2.4 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33915 -5.9 -7.0 isopropylmalate isomerase compare
BPHYT_RS33865 -5.9 -4.1 tryptophan synthase alpha chain compare
BPHYT_RS33875 -5.9 -5.7 tryptophan synthase subunit alpha compare
BPHYT_RS02690 -5.7 -10.9 protoheme IX farnesyltransferase compare
BPHYT_RS16245 -5.7 -5.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS04955 -5.6 -2.3 methionyl-tRNA synthetase compare
BPHYT_RS09500 -5.5 -6.5 glucose-6-phosphate isomerase compare
BPHYT_RS06555 -5.5 -3.8 ketol-acid reductoisomerase compare
BPHYT_RS17855 -5.3 -8.9 glutamate synthase compare
BPHYT_RS13705 -5.3 -3.6 chorismate synthase compare
BPHYT_RS15920 -5.2 -8.0 argininosuccinate synthase compare
BPHYT_RS14910 -5.1 -12.8 chorismate mutase compare
BPHYT_RS33880 -5.1 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS14865 -5.1 -3.5 UDP-glucose 6-dehydrogenase compare
BPHYT_RS17395 -5.1 -2.9 anthranilate synthase subunit II compare
BPHYT_RS15915 -5.1 -7.0 ornithine carbamoyltransferase compare
BPHYT_RS17715 -5.1 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS18320 -5.1 -3.5 orotate phosphoribosyltransferase compare
BPHYT_RS06545 -5.0 -8.4 acetolactate synthase compare
BPHYT_RS02045 -4.8 -5.7 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS33900 -4.8 -11.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS08955 -4.6 -3.1 homoserine dehydrogenase compare
BPHYT_RS33840 -4.6 -6.9 amidophosphoribosyltransferase compare
BPHYT_RS33645 -4.5 -3.1 homoserine kinase compare
BPHYT_RS01595 -4.5 -8.2 homoserine O-acetyltransferase compare
BPHYT_RS17390 -4.5 -18.1 anthranilate synthase subunit I compare
BPHYT_RS04080 -4.4 -7.2 chloride channel protein compare
BPHYT_RS12530 -4.4 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS12150 -4.4 -16.9 PII uridylyl-transferase compare
BPHYT_RS14400 -4.3 -4.1 anti-sigma factor compare
BPHYT_RS17265 -4.2 -1.7 cell division protein compare
BPHYT_RS06405 -4.1 -7.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS17095 -4.1 -2.8 proline--tRNA ligase compare
BPHYT_RS17380 -4.0 -9.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS08245 -4.0 -6.5 anti-sigma factor compare
BPHYT_RS02685 -4.0 -12.6 cytochrome C oxidase subunit I compare
BPHYT_RS17405 -4.0 -1.6 indole-3-glycerol phosphate synthase compare
BPHYT_RS36220 -4.0 -1.6 hypothetical protein compare
BPHYT_RS04720 -3.9 -10.7 transcriptional regulator compare
BPHYT_RS12465 -3.9 -2.7 inositol monophosphatase compare
BPHYT_RS02525 -3.9 -9.0 membrane protein compare
BPHYT_RS14895 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33920 -3.9 -5.9 type II citrate synthase compare
BPHYT_RS16835 -3.9 -5.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS02640 -3.9 -14.6 cytochrome C oxidase compare
BPHYT_RS11390 -3.8 -9.6 penicillin-binding protein 1A compare
BPHYT_RS15075 -3.8 -2.6 dihydrokaempferol 4-reductase compare
BPHYT_RS14050 -3.8 -9.9 UDP pyrophosphate phosphatase compare
BPHYT_RS06900 -3.7 -4.4 aspartate aminotransferase compare
BPHYT_RS33535 -3.7 -23.1 RNA polymerase sigma factor RpoD compare
BPHYT_RS09515 -3.7 -2.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16905 -3.7 -4.9 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS10100 -3.6 -5.5 dihydroxy-acid dehydratase compare
BPHYT_RS02590 -3.6 -8.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS06065 -3.6 -11.6 cytochrome C compare
BPHYT_RS09160 -3.6 -5.8 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS02905 -3.6 -22.0 RNA polymerase subunit sigma-54 compare
BPHYT_RS14190 -3.6 -3.5 carbamoyl phosphate synthase large subunit compare
BPHYT_RS25780 -3.5 -1.4 DeoR faimly transcriptional regulator compare
BPHYT_RS06045 -3.4 -8.8 transaldolase compare
BPHYT_RS17890 -3.4 -2.3 shikimate kinase compare
BPHYT_RS02665 -3.4 -15.2 MFS transporter compare
BPHYT_RS17885 -3.4 -5.1 3-dehydroquinate synthase compare
BPHYT_RS02860 -3.4 -1.3 membrane protein compare
BPHYT_RS06975 -3.4 -2.3 glutamate racemase compare
BPHYT_RS14900 -3.3 -3.5 prephenate dehydrogenase compare
BPHYT_RS13605 -3.3 -1.9 tRNA-Pro compare
BPHYT_RS12615 -3.3 -1.9 dihydrodipicolinate synthase compare
BPHYT_RS12985 -3.3 -2.2 amino acid acetyltransferase compare
BPHYT_RS06610 -3.3 -1.8 triosephosphate isomerase compare
BPHYT_RS12940 -3.3 -7.5 signal transduction histidine kinase compare
BPHYT_RS01300 -3.2 -7.4 ArsR family transcriptional regulator compare
BPHYT_RS17700 -3.2 -3.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS03640 -3.2 -2.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS02610 -3.2 -4.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS13245 -3.2 -5.8 hypothetical protein compare
BPHYT_RS12935 -3.1 -9.8 chemotaxis protein CheY compare
BPHYT_RS03135 -3.1 -9.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS08960 -3.0 -2.0 threonine synthase compare
BPHYT_RS33905 -3.0 -1.5 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS17520 -3.0 -4.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS06530 -3.0 -2.3 membrane protein compare
BPHYT_RS17945 -3.0 -2.7 cytochrome C biogenesis protein compare
BPHYT_RS04740 -3.0 -8.2 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS16735 -3.0 -7.2 phosphogluconate dehydratase compare
BPHYT_RS16210 -2.9 -4.7 peptidase compare
BPHYT_RS22730 -2.9 -5.6 serine/threonine kinase compare
BPHYT_RS05010 -2.9 -4.8 RpiR family transcriptional regulator compare
BPHYT_RS31060 -2.9 -1.6 capsular polysaccharide biosynthesis protein compare
BPHYT_RS04725 -2.9 -9.1 sulfite reductase compare
BPHYT_RS06075 -2.8 -8.1 hypothetical protein compare
BPHYT_RS03535 -2.8 -4.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS33655 -2.7 -6.4 MarR family transcriptional regulator compare
BPHYT_RS16345 -2.7 -4.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS16270 -2.7 -3.4 phosphoglycerate kinase compare
BPHYT_RS16430 -2.7 -15.9 cytochrome C compare
BPHYT_RS03280 -2.7 -1.4 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS12815 -2.7 -5.4 IclR family transcriptional regulator compare
BPHYT_RS16435 -2.7 -17.2 alcohol dehydrogenase compare
BPHYT_RS35885 -2.7 -3.2 hypothetical protein compare
BPHYT_RS06540 -2.6 -8.3 RNA polymerase sigma70 factor compare
BPHYT_RS14845 -2.6 -1.7 cysteine synthase compare
BPHYT_RS06905 -2.6 -8.6 excinuclease ABC subunit B compare
BPHYT_RS13645 -2.6 -17.6 threonine--tRNA ligase compare
BPHYT_RS24285 -2.6 -2.3 TetR family transcriptional regulator compare
BPHYT_RS12990 -2.5 -2.8 iron transporter compare
BPHYT_RS16340 -2.5 -4.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS33580 -2.4 -5.6 geranyltranstransferase compare
BPHYT_RS33540 -2.4 -2.8 hypothetical protein compare
BPHYT_RS16255 -2.4 -1.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS06070 -2.3 -9.4 cytochrome C compare
BPHYT_RS34780 -2.3 -5.4 phytoene synthase compare
BPHYT_RS22190 -2.3 -3.1 nucleoid-structuring protein H-NS compare
BPHYT_RS04730 -2.3 -6.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS18970 -2.3 -11.0 chemotaxis protein compare
BPHYT_RS15710 -2.3 -1.6 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS04745 -2.2 -6.3 sulfate adenylyltransferase compare
BPHYT_RS09645 -2.2 -4.0 ankyrin compare
BPHYT_RS16740 -2.2 -9.9 transcriptional regulator compare
BPHYT_RS16840 -2.2 -1.5 transketolase compare
BPHYT_RS08850 -2.2 -1.4 transcriptional regulator compare
BPHYT_RS23570 -2.2 -4.8 chemotaxis protein CheY compare
BPHYT_RS09145 -2.2 -9.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS14195 -2.1 -2.4 carbamoyl phosphate synthase small subunit compare
BPHYT_RS16990 -2.1 -6.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS16085 -2.1 -3.5 DeoR faimly transcriptional regulator compare
BPHYT_RS01625 -2.1 -1.4 chemotaxis protein CheY compare
BPHYT_RS14320 -2.0 -10.1 UvrABC system protein C compare
BPHYT_RS13595 -2.0 -5.5 IclR family transcriptional regulator compare
BPHYT_RS15415 -2.0 -9.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17100 -2.0 -4.7 RNA pyrophosphohydrolase compare
BPHYT_RS06685 -2.0 -1.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS06600 -1.9 -2.4 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS12055 -1.9 -13.9 phosphoenolpyruvate synthase compare
BPHYT_RS32260 -1.9 -0.9 hypothetical protein compare
BPHYT_RS12840 -1.9 -3.2 pyruvate dehydrogenase compare
BPHYT_RS06410 -1.9 -2.9 transcriptional regulator compare
BPHYT_RS01485 -1.9 -1.3 histidine kinase compare
BPHYT_RS15620 -1.9 -3.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS03570 -1.9 -6.8 heat-inducible transcription repressor HrcA compare
BPHYT_RS36385 -1.9 -1.3 TetR family transcriptional regulator compare
BPHYT_RS03645 -1.9 -2.3 tRNA dimethylallyltransferase compare
BPHYT_RS02570 -1.9 -7.9 phosphocarrier protein HPr compare
BPHYT_RS06345 -1.9 -4.8 sensor histidine kinase compare
BPHYT_RS02635 -1.9 -6.0 membrane protein compare
BPHYT_RS02885 -1.8 -8.5 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS00980 -1.8 -1.2 GCN5 family acetyltransferase compare
BPHYT_RS08125 -1.8 -9.0 ATPase compare
BPHYT_RS12285 -1.8 -7.8 isocitrate lyase compare
BPHYT_RS05155 -1.8 -5.5 acetyltransferase GCN5 compare
BPHYT_RS08945 -1.8 -11.6 hypothetical protein compare
BPHYT_RS13890 -1.8 -2.3 RpiR family transcriptional regulator compare
BPHYT_RS06550 -1.8 -1.7 acetolactate synthase compare
BPHYT_RS06535 -1.8 -3.2 membrane protein compare
BPHYT_RS22360 -1.8 -3.3 response regulator receiver compare
BPHYT_RS07325 -1.7 -1.1 GntR family transcriptional regulator compare
BPHYT_RS02675 -1.7 -7.5 hypothetical protein compare
BPHYT_RS02650 -1.7 -1.7 membrane protein compare
BPHYT_RS11555 -1.7 -2.4 allantoinase compare
BPHYT_RS09315 -1.7 -0.9 chemotaxis protein CheY compare
BPHYT_RS26355 -1.6 -1.9 hypothetical protein compare
BPHYT_RS06350 -1.6 -2.0 chemotaxis protein CheY compare
BPHYT_RS14755 -1.6 -3.0 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS17745 -1.6 -5.4 toluene tolerance family protein compare
BPHYT_RS19785 -1.6 -1.9 chemotaxis protein CheY compare
BPHYT_RS06710 -1.6 -1.7 hypothetical protein compare
BPHYT_RS09330 -1.6 -8.5 phytoene synthase compare
BPHYT_RS12725 -1.6 -9.4 regulator compare
BPHYT_RS23910 -1.6 -1.6 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS18760 -1.6 -2.0 flagellar biosynthesis protein FliT compare
BPHYT_RS18635 -1.6 -2.7 LamB/YcsF family protein compare
BPHYT_RS17035 -1.6 -2.9 sugar kinase compare
BPHYT_RS14105 -1.5 -8.8 exopolyphosphatase compare
BPHYT_RS16080 -1.5 -6.1 xylulokinase compare
BPHYT_RS03725 -1.5 -1.0 serine hydroxymethyltransferase compare
BPHYT_RS20025 -1.5 -2.6 crotonase compare
BPHYT_RS01505 -1.5 -3.1 7-cyano-7-deazaguanine reductase compare
BPHYT_RS18765 -1.5 -5.3 flagellar biosynthesis protein FliS compare
BPHYT_RS02680 -1.5 -7.3 cytochrome C oxidase subunit I compare
BPHYT_RS17760 -1.5 -4.5 ABC transporter permease compare
BPHYT_RS28830 -1.5 -1.3 LysR family transcriptional regulator compare
BPHYT_RS17075 -1.5 -3.5 ABC transporter permease compare
BPHYT_RS05490 -1.5 -3.6 porin compare
BPHYT_RS05035 -1.5 -5.2 sugar ABC transporter permease compare
BPHYT_RS14485 -1.4 -2.8 ribonuclease E compare
BPHYT_RS02865 -1.4 -1.0 hypothetical protein compare
BPHYT_RS15305 -1.4 -5.3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS01590 -1.4 -6.3 methionine biosynthesis protein MetW compare
BPHYT_RS02695 -1.4 -6.2 photosynthetic protein synthase I compare


Specific Phenotypes

For 10 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days across organisms