Experiment set23IT032 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Carbon source Sodium D,L-Lactate 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_2121 +1.9 3.6 hypothetical protein compare
Pf6N2E2_4367 +1.5 1.7 hypothetical protein compare
Pf6N2E2_1656 +1.4 2.3 hypothetical protein compare
Pf6N2E2_5425 +1.3 1.3 hypothetical protein compare
Pf6N2E2_1886 +1.2 1.9 hypothetical protein compare
Pf6N2E2_3849 +1.2 1.7 FIG00954739: hypothetical protein compare
Pf6N2E2_3665 +1.2 1.2 serine/threonine protein kinase compare
Pf6N2E2_1162 +1.2 2.5 Transmembrane amino acid efflux protein compare
Pf6N2E2_2674 +1.1 1.0 FIG00953856: hypothetical protein compare
Pf6N2E2_660 +1.1 4.6 hypothetical protein compare
Pf6N2E2_5869 +1.0 1.8 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_4369 +1.0 3.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_99 +1.0 2.8 hypothetical protein compare
Pf6N2E2_2375 +1.0 1.7 Response regulator NasT compare
Pf6N2E2_2835 +1.0 2.9 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_3088 +1.0 2.0 hypothetical protein compare
Pf6N2E2_737 +1.0 1.2 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_1987 +1.0 1.1 hypothetical protein compare
Pf6N2E2_4987 +1.0 0.6 MaoC-like domain protein compare
Pf6N2E2_3108 +1.0 2.0 FIG00953405: hypothetical protein compare
Pf6N2E2_5739 +1.0 0.8 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3744 +1.0 1.9 General secretion pathway protein F compare
Pf6N2E2_2561 +1.0 2.5 FIG00955434: hypothetical protein compare
Pf6N2E2_3727 +0.9 1.4 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_4527 +0.9 2.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1838 +0.9 2.4 6-hexanolactone hydrolase compare
Pf6N2E2_442 +0.9 2.5 FIG00962345: hypothetical protein compare
Pf6N2E2_5841 +0.9 0.9 GlcG protein compare
Pf6N2E2_3778 +0.9 1.9 FIG00954300: hypothetical protein compare
Pf6N2E2_5246 +0.9 3.2 FIG00955938: hypothetical protein compare
Pf6N2E2_3875 +0.9 1.3 FIG00953324: hypothetical protein compare
Pf6N2E2_1694 +0.9 0.4 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1128 +0.8 0.9 Two-component response regulator compare
Pf6N2E2_5207 +0.8 1.3 hypothetical protein compare
Pf6N2E2_1093 +0.8 2.4 Transcriptional regulatory protein compare
Pf6N2E2_4708 +0.8 1.6 hypothetical protein compare
Pf6N2E2_4993 +0.8 1.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_122 +0.8 0.6 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_2045 +0.8 1.8 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_362 +0.8 2.1 Dipeptide transport system permease protein dppC compare
Pf6N2E2_2223 +0.8 1.9 hypothetical protein compare
Pf6N2E2_1083 +0.8 2.0 hypothetical protein compare
Pf6N2E2_1140 +0.8 1.6 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_4928 +0.8 0.9 Permeases of the major facilitator superfamily compare
Pf6N2E2_4733 +0.8 1.2 hypothetical protein compare
Pf6N2E2_546 +0.8 0.7 FIG00966904: hypothetical protein compare
Pf6N2E2_2252 +0.8 2.4 NreA-like protein compare
Pf6N2E2_1319 +0.8 1.8 FIG074102: hypothetical protein compare
Pf6N2E2_4508 +0.8 2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_1821 +0.7 0.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1504 +0.7 1.2 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_4148 +0.7 6.5 Glutamate-aspartate carrier protein compare
Pf6N2E2_4121 +0.7 2.6 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_3179 +0.7 1.8 FIG021952: putative membrane protein compare
Pf6N2E2_2247 +0.7 1.8 Transcriptional regulator, AraC family compare
Pf6N2E2_2579 +0.7 2.6 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_5242 +0.7 0.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5050 +0.7 1.6 hypothetical protein compare
Pf6N2E2_2871 +0.7 2.7 FIG00954271: hypothetical protein compare
Pf6N2E2_2912 +0.7 1.6 FIG00954094: hypothetical protein compare
Pf6N2E2_1456 +0.7 2.2 D-xylose transport ATP-binding protein XylG compare
Pf6N2E2_3923 +0.7 2.9 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
Pf6N2E2_568 +0.7 3.9 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) compare
Pf6N2E2_3206 +0.7 1.7 hypothetical protein compare
Pf6N2E2_5452 +0.7 0.9 hypothetical protein compare
Pf6N2E2_3539 +0.7 1.5 FIG00955840: hypothetical protein compare
Pf6N2E2_2253 +0.6 1.7 hypothetical protein compare
Pf6N2E2_3132 +0.6 1.8 FIG00954548: hypothetical protein compare
Pf6N2E2_629 +0.6 1.7 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_1135 +0.6 2.4 COGs COG3558 compare
Pf6N2E2_1623 +0.6 2.9 Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf6N2E2_1895 +0.6 2.5 PQQ-dependent oxidoreductase, gdhB family compare
Pf6N2E2_2143 +0.6 2.3 Uncharacterized GST-like protein yncG compare
Pf6N2E2_3033 +0.6 0.9 hypothetical protein compare
Pf6N2E2_724 +0.6 1.7 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_5664 +0.6 3.2 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_2896 +0.6 2.8 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_2578 +0.6 1.2 Flagellar biosynthesis protein FliR compare
Pf6N2E2_4084 +0.6 5.6 Transcriptional regulator compare
Pf6N2E2_180 +0.6 2.4 Transcriptional regulator, MerR family compare
Pf6N2E2_146 +0.6 1.1 Transcriptional regulator, MarR family compare
Pf6N2E2_699 +0.6 2.7 Heme d1 biosynthesis protein NirG compare
Pf6N2E2_3284 +0.6 3.3 Septum formation protein Maf compare
Pf6N2E2_1423 +0.6 2.7 Gamma-aminobutyrate permease compare
Pf6N2E2_1650 +0.6 3.1 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_1044 +0.6 1.4 hypothetical protein compare
Pf6N2E2_3696 +0.6 0.6 hypothetical protein compare
Pf6N2E2_2594 +0.6 3.4 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_3799 +0.6 2.0 Histidine ammonia-lyase (EC 4.3.1.3) (from data) compare
Pf6N2E2_3098 +0.6 1.9 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf6N2E2_1329 +0.6 2.4 Phenylacetaldehyde dehydrogenase (EC 1.2.1.39) compare
Pf6N2E2_4128 +0.6 1.5 hypothetical protein compare
Pf6N2E2_479 +0.6 2.2 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_2309 +0.6 2.6 hypothetical protein compare
Pf6N2E2_434 +0.6 1.1 hypothetical protein compare
Pf6N2E2_1815 +0.6 0.8 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_1761 +0.6 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_3270 +0.6 2.9 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1223 +0.6 1.5 Amino acid transporters compare
Pf6N2E2_1034 +0.6 0.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_623 +0.6 0.5 FIG00954674: hypothetical protein compare
Pf6N2E2_4489 +0.6 2.4 Putative activity regulator of membrane protease YbbK compare
Pf6N2E2_1526 +0.6 2.8 MgtC family compare
Pf6N2E2_1843 +0.6 2.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Pf6N2E2_2583 +0.6 2.7 Flagellar motor switch protein FliM compare
Pf6N2E2_39 +0.6 2.0 FIG00857858: hypothetical protein compare
Pf6N2E2_460 +0.5 2.2 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_5993 +0.5 0.6 FIG00957412: hypothetical protein compare
Pf6N2E2_1824 +0.5 0.8 hypothetical protein compare
Pf6N2E2_3234 +0.5 1.6 mandelate racemase/muconate lactonizing enzyme family protein compare
Pf6N2E2_3095 +0.5 1.0 hypothetical protein compare
Pf6N2E2_4640 +0.5 0.6 hypothetical protein compare
Pf6N2E2_5695 +0.5 3.0 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_1905 +0.5 1.3 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_5621 +0.5 1.7 DNA-binding response regulator compare
Pf6N2E2_352 +0.5 1.9 Opine oxidase subunit B compare
Pf6N2E2_200 +0.5 1.8 Possible glycosyltransferase compare
Pf6N2E2_2013 +0.5 1.1 hypothetical protein compare
Pf6N2E2_322 +0.5 1.5 Transcriptional regulator, LacI family compare
Pf6N2E2_2574 +0.5 0.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_669 +0.5 1.6 Nuclease inhibitor compare
Pf6N2E2_4543 +0.5 2.0 hypothetical protein compare
Pf6N2E2_3480 +0.5 0.9 Transcriptional regulator, ArsR family compare
Pf6N2E2_3529 +0.5 0.7 Toxin A compare
Pf6N2E2_1356 +0.5 1.8 phosphoesterase, putative compare
Pf6N2E2_189 +0.5 1.4 regulatory protein, putative compare
Pf6N2E2_5375 +0.5 2.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4340 +0.5 2.0 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf6N2E2_1619 +0.5 2.1 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_1111 +0.5 2.6 cell wall degradation protein compare
Pf6N2E2_482 +0.5 1.5 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_704 +0.5 1.6 Cytochrome c551/c552 compare
Pf6N2E2_1108 +0.5 2.4 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_867 +0.5 2.4 PhaK-like protein compare
Pf6N2E2_3285 +0.5 1.7 Rod shape-determining protein MreD compare
Pf6N2E2_1778 +0.5 1.0 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_2580 +0.5 2.5 Flagellar biosynthesis protein FliP compare
Pf6N2E2_4392 +0.5 1.0 Translation initiation inhibitor compare
Pf6N2E2_1110 +0.5 1.5 FIG00964414: hypothetical protein compare
Pf6N2E2_1523 +0.5 1.9 Universal stress protein family 5 compare
Pf6N2E2_259 +0.5 2.7 Transcriptional regulator, LysR family compare
Pf6N2E2_1740 +0.5 1.0 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_1452 +0.5 1.6 hypothetical protein compare
Pf6N2E2_6164 +0.5 0.5 tRNA-Val-TAC compare
Pf6N2E2_652 +0.5 1.5 General secretion pathway protein E compare
Pf6N2E2_1379 +0.5 2.3 Sensory box histidine kinase/response regulator compare
Pf6N2E2_5111 +0.5 1.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_5455 +0.5 1.7 hypothetical protein compare
Pf6N2E2_4307 +0.5 1.2 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_732 +0.5 2.6 Respiratory nitrate reductase gamma chain (EC 1.7.99.4) compare
Pf6N2E2_1529 +0.5 1.8 hypothetical protein compare
Pf6N2E2_4917 +0.5 2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2597 +0.5 3.6 Flagellar regulatory protein FleQ compare
Pf6N2E2_1205 +0.5 1.7 Transcriptional regulator, AraC family compare
Pf6N2E2_3959 +0.5 2.8 FIG00955799: hypothetical protein compare
Pf6N2E2_2098 +0.5 1.6 heme uptake regulator compare
Pf6N2E2_4915 +0.5 2.0 FIG000875: Thioredoxin domain-containing protein EC-YbbN compare
Pf6N2E2_58 +0.5 0.6 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_4204 +0.5 0.5 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5210 +0.5 1.3 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) compare
Pf6N2E2_2590 +0.5 3.0 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_2224 +0.5 3.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3037 +0.5 3.5 RNA polymerase sigma factor RpoS compare
Pf6N2E2_1744 +0.5 1.5 ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) compare
Pf6N2E2_5405 +0.5 1.8 ABC transporter for D-Alanine, ATPase component (from data) compare
Pf6N2E2_1663 +0.5 2.0 2-keto-3-deoxy-L-fuconate dehydrogenase compare
Pf6N2E2_4803 +0.5 0.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1138 +0.5 2.6 Transcriptional regulator, AraC family compare
Pf6N2E2_1783 +0.5 0.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4254 +0.5 1.7 HflK protein compare
Pf6N2E2_2627 +0.5 2.2 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_217 +0.5 2.0 Signal transduction histidine kinase compare
Pf6N2E2_5860 +0.5 3.0 Branched-chain amino acid transport system carrier protein compare
Pf6N2E2_927 +0.5 2.0 (AJ250023) putative polyketide synthase compare
Pf6N2E2_4146 +0.5 1.0 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_5990 +0.5 0.7 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_136 +0.5 1.2 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_846 +0.5 2.8 Universal stress protein family 5 compare
Pf6N2E2_5333 +0.4 2.9 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_16 +0.4 0.4 hypothetical protein compare
Pf6N2E2_445 +0.4 2.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2625 +0.4 1.3 Flagellar P-ring protein FlgI compare
Pf6N2E2_1091 +0.4 1.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_1305 +0.4 1.3 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_596 +0.4 2.4 Arsenic efflux pump protein compare
Pf6N2E2_238 +0.4 0.9 hypothetical protein compare
Pf6N2E2_1161 +0.4 1.2 FIG00961921: hypothetical protein compare
Pf6N2E2_2106 +0.4 1.1 hypothetical protein compare
Pf6N2E2_504 +0.4 1.0 DNA-binding response regulator compare
Pf6N2E2_2716 +0.4 0.9 FIG00954793: hypothetical protein compare
Pf6N2E2_5293 +0.4 2.4 Protein sirB1 compare
Pf6N2E2_5237 +0.4 1.2 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_1836 +0.4 2.1 Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16) compare
Pf6N2E2_2589 +0.4 2.9 Flagellar protein FliJ compare
Pf6N2E2_627 +0.4 2.5 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
Pf6N2E2_648 +0.4 0.4 General secretion pathway protein K compare
Pf6N2E2_2232 +0.4 1.6 Virulence factor mviM compare
Pf6N2E2_1392 +0.4 1.8 sensor histidine kinase compare
Pf6N2E2_847 +0.4 1.6 Phosphoribosyl transferase domain protein compare
Pf6N2E2_6071 +0.4 0.8 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

For carbon source Sodium D,L-Lactate across organisms