Experiment set23IT031 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Carbon source D-Glucose 10 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_64 -5.3 -3.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_77 -4.7 -3.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4596 -4.5 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3630 -4.4 -6.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3932 -4.4 -8.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4279 -4.3 -15.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4825 -4.3 -10.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4826 -4.2 -5.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_71 -4.2 -7.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5014 -4.1 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4597 -4.0 -4.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3783 -4.0 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5177 -4.0 -10.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3842 -3.9 -7.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2895 -3.8 -11.8 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_4048 -3.7 -5.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3782 -3.6 -7.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4564 -3.6 -10.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_63 -3.6 -5.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_1400 -3.4 -13.1 Sensory box histidine kinase/response regulator compare
Pf6N2E2_4278 -3.4 -14.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2892 -3.3 -14.9 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_5176 -3.3 -5.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3940 -3.3 -11.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2885 -3.3 -6.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5728 -3.2 -7.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_6164 -3.2 -1.3 tRNA-Val-TAC compare
Pf6N2E2_302 -3.2 -5.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4047 -3.2 -3.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_1381 -3.2 -6.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2258 -3.1 -10.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2896 -3.1 -5.1 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_2074 -3.1 -3.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3752 -3.1 -21.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_1402 -3.1 -6.0 hypothetical protein compare
Pf6N2E2_3170 -3.0 -8.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2073 -3.0 -6.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2889 -2.9 -14.2 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_3325 -2.9 -2.0 ABC transporter, ATP-binding protein compare
Pf6N2E2_3839 -2.9 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3253 -2.8 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5006 -2.8 -2.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3751 -2.8 -10.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2891 -2.8 -13.8 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_3841 -2.8 -5.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5571 -2.7 -2.3 hypothetical protein compare
Pf6N2E2_3252 -2.7 -6.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2899 -2.7 -4.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_2890 -2.7 -10.6 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_66 -2.7 -7.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_1512 -2.7 -1.8 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_3725 -2.6 -2.4 FIG085779: Lipoprotein compare
Pf6N2E2_4277 -2.6 -10.0 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_1116 -2.6 -1.6 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_2753 -2.6 -3.4 HtrA protease/chaperone protein compare
Pf6N2E2_3610 -2.5 -4.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5175 -2.5 -7.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_613 -2.4 -1.3 lipoprotein, putative compare
Pf6N2E2_2274 -2.4 -1.7 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2893 -2.4 -8.0 hypothetical protein compare
Pf6N2E2_5150 -2.4 -5.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1203 -2.4 -1.6 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_2675 -2.4 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2465 -2.4 -4.6 Cys regulon transcriptional activator CysB compare
Pf6N2E2_50 -2.3 -9.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_2863 -2.3 -5.4 Gluconate permease compare
Pf6N2E2_1238 -2.3 -2.0 hypothetical protein compare
Pf6N2E2_649 -2.3 -2.3 General secretion pathway protein L compare
Pf6N2E2_5527 -2.3 -5.1 Cold shock protein CspC compare
Pf6N2E2_178 -2.1 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2897 -2.1 -10.5 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_3251 -2.1 -9.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4706 -2.0 -1.1 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_2707 -2.0 -2.3 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_4009 -1.9 -9.1 GGDEF domain protein compare
Pf6N2E2_2549 -1.9 -1.0 hypothetical protein compare
Pf6N2E2_4049 -1.8 -8.4 Glycine cleavage system transcriptional activator compare
Pf6N2E2_1401 -1.8 -6.3 FIG00955631: hypothetical protein compare
Pf6N2E2_1774 -1.8 -1.0 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_1870 -1.8 -1.6 hypothetical protein compare
Pf6N2E2_623 -1.8 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_3984 -1.8 -8.5 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3397 -1.8 -2.1 Phage protein compare
Pf6N2E2_2129 -1.8 -1.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4601 -1.8 -3.2 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_1065 -1.8 -3.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2864 -1.8 -2.2 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_5103 -1.7 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3248 -1.7 -5.8 Probable transmembrane protein compare
Pf6N2E2_2938 -1.7 -3.6 Outer membrane lipoprotein compare
Pf6N2E2_5676 -1.7 -5.0 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_4453 -1.7 -12.1 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5452 -1.7 -1.5 hypothetical protein compare
Pf6N2E2_2088 -1.7 -1.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2518 -1.6 -2.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3666 -1.6 -2.2 InaA protein compare
Pf6N2E2_3466 -1.6 -2.6 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_2487 -1.6 -0.9 FIG00956090: hypothetical protein compare
Pf6N2E2_2003 -1.6 -1.0 hypothetical protein compare
Pf6N2E2_58 -1.6 -1.4 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2225 -1.6 -1.4 FIG00953489: hypothetical protein compare
Pf6N2E2_1705 -1.6 -1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4987 -1.6 -0.6 MaoC-like domain protein compare
Pf6N2E2_1545 -1.5 -2.5 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_1450 -1.5 -2.0 FIG00960438: hypothetical protein compare
Pf6N2E2_5666 -1.5 -7.9 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_945 -1.5 -2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_2688 -1.5 -3.0 YD repeat protein compare
Pf6N2E2_288 -1.5 -1.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5780 -1.5 -6.0 Periplasmic protease compare
Pf6N2E2_3060 -1.5 -4.0 Outer membrane protein H precursor compare
Pf6N2E2_4206 -1.5 -1.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2218 -1.5 -2.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_647 -1.5 -1.8 General secretion pathway protein G compare
Pf6N2E2_2017 -1.5 -1.4 DNA-binding protein compare
Pf6N2E2_2061 -1.4 -2.2 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_3938 -1.4 -8.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_1441 -1.4 -0.9 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_1404 -1.4 -1.5 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_1128 -1.4 -1.0 Two-component response regulator compare
Pf6N2E2_285 -1.4 -2.6 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_2063 -1.4 -3.0 Predicted cobalt transporter CbtA compare
Pf6N2E2_2072 -1.4 -2.3 hypothetical protein compare
Pf6N2E2_1758 -1.4 -0.9 Transcriptional regulator, MarR family compare
Pf6N2E2_906 -1.4 -2.7 ISPpu14, transposase Orf2 compare
Pf6N2E2_1113 -1.4 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2080 -1.3 -0.7 hypothetical protein compare
Pf6N2E2_1335 -1.3 -2.3 Phospholipid-binding protein compare
Pf6N2E2_3198 -1.3 -0.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4054 -1.3 -1.4 Osmotically inducible protein C compare
Pf6N2E2_2646 -1.3 -0.8 FIG00953416: hypothetical protein compare
Pf6N2E2_4640 -1.3 -0.7 hypothetical protein compare
Pf6N2E2_4362 -1.3 -1.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3661 -1.3 -7.9 hypothetical protein compare
Pf6N2E2_367 -1.3 -1.3 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2195 -1.3 -2.7 cI compare
Pf6N2E2_3537 -1.3 -2.5 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_2508 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_4611 -1.3 -1.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_494 -1.3 -2.1 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_5160 -1.3 -0.7 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5843 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_2217 -1.2 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1287 -1.2 -1.3 Mobile element protein compare
Pf6N2E2_2507 -1.2 -3.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5049 -1.2 -0.8 acetyltransferase, GNAT family compare
Pf6N2E2_4599 -1.2 -1.6 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_2324 -1.2 -1.4 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_5156 -1.2 -0.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4181 -1.2 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_5746 -1.2 -1.5 Cobalamin synthase compare
Pf6N2E2_4077 -1.2 -2.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_600 -1.2 -1.4 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_4071 -1.2 -2.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_658 -1.2 -7.1 sensor histidine kinase compare
Pf6N2E2_5742 -1.2 -2.7 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_5943 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_1981 -1.2 -2.2 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3982 -1.2 -1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_5258 -1.2 -5.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2502 -1.2 -1.8 O-antigen acetylase compare
Pf6N2E2_3204 -1.2 -0.9 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_5499 -1.2 -0.4 hypothetical protein compare
Pf6N2E2_5346 -1.2 -0.8 rRNA small subunit methyltransferase I compare
Pf6N2E2_2514 -1.1 -1.1 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3642 -1.1 -2.4 lipoprotein, putative compare
Pf6N2E2_4372 -1.1 -2.5 FIG00460773: hypothetical protein compare
Pf6N2E2_5704 -1.1 -3.4 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5756 -1.1 -3.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3033 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_4797 -1.1 -1.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_1089 -1.1 -1.2 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_2340 -1.1 -2.8 Transcriptional regulator, GntR family compare
Pf6N2E2_6090 -1.1 -1.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_2513 -1.1 -1.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_1652 -1.1 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_546 -1.1 -1.0 FIG00966904: hypothetical protein compare
Pf6N2E2_5013 -1.1 -2.4 Putative membrane protein compare
Pf6N2E2_833 -1.1 -1.7 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_477 -1.1 -1.8 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_5261 -1.1 -0.4 FIG00956983: hypothetical protein compare
Pf6N2E2_5188 -1.1 -2.4 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4615 -1.1 -1.0 type IV pili signal transduction protein PilI compare
Pf6N2E2_16 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_1579 -1.0 -2.7 hypothetical protein compare
Pf6N2E2_5508 -1.0 -1.3 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3062 -1.0 -2.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2323 -1.0 -1.2 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_5575 -1.0 -1.7 Glycerol uptake facilitator protein compare
Pf6N2E2_2798 -1.0 -1.3 Death on curing protein, Doc toxin compare
Pf6N2E2_659 -1.0 -1.8 Transcriptional regulatory protein ompR compare
Pf6N2E2_1596 -1.0 -0.5 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5252 -1.0 -1.4 FIG00956396: hypothetical protein compare
Pf6N2E2_5524 -1.0 -5.1 Outer membrane porin, OprD family compare
Pf6N2E2_3338 -1.0 -1.5 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_2235 -1.0 -2.2 Xanthine permease compare
Pf6N2E2_6099 -1.0 -0.3 tRNA-Glu-TTC compare
Pf6N2E2_5579 -1.0 -4.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4963 -1.0 -1.2 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_2778 -1.0 -2.0 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

For carbon source D-Glucose across organisms