Experiment set23IT031 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Carbon source D-Glucose 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_1656 +1.8 2.8 hypothetical protein compare
Pf6N2E2_4678 +1.4 1.2 hypothetical protein compare
Pf6N2E2_2536 +1.4 2.3 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_1694 +1.2 0.6 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5869 +1.2 1.9 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_2574 +1.2 1.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_923 +1.1 1.5 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_5242 +1.1 1.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4369 +1.1 4.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2121 +1.1 1.8 hypothetical protein compare
Pf6N2E2_4367 +1.1 1.1 hypothetical protein compare
Pf6N2E2_4993 +1.0 2.0 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_1838 +1.0 3.1 6-hexanolactone hydrolase compare
Pf6N2E2_3696 +1.0 1.2 hypothetical protein compare
Pf6N2E2_3277 +1.0 1.9 FagA protein compare
Pf6N2E2_2106 +1.0 2.2 hypothetical protein compare
Pf6N2E2_2869 +1.0 1.0 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3161 +1.0 3.1 hypothetical protein compare
Pf6N2E2_2674 +1.0 0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_3786 +1.0 6.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_3037 +1.0 7.7 RNA polymerase sigma factor RpoS compare
Pf6N2E2_4541 +1.0 0.5 hypothetical protein compare
Pf6N2E2_1617 +1.0 1.2 COG2199: FOG: GGDEF domain compare
Pf6N2E2_5645 +0.9 3.4 Transcriptional regulator, LysR family compare
Pf6N2E2_1044 +0.9 2.3 hypothetical protein compare
Pf6N2E2_1288 +0.9 2.0 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_445 +0.9 4.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3529 +0.9 1.0 Toxin A compare
Pf6N2E2_2552 +0.9 6.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4159 +0.9 6.3 Cytochrome c4 compare
Pf6N2E2_5339 +0.9 7.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3849 +0.9 1.3 FIG00954739: hypothetical protein compare
Pf6N2E2_1754 +0.9 1.1 FIG00731982: hypothetical protein compare
Pf6N2E2_2842 +0.9 1.0 hypothetical protein compare
Pf6N2E2_3785 +0.8 4.8 Twin-arginine translocation protein TatB compare
Pf6N2E2_5337 +0.8 7.8 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5338 +0.8 7.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_180 +0.8 2.0 Transcriptional regulator, MerR family compare
Pf6N2E2_737 +0.8 0.9 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_3791 +0.8 5.7 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2589 +0.8 3.6 Flagellar protein FliJ compare
Pf6N2E2_1014 +0.8 2.2 Nitrate/nitrite transporter compare
Pf6N2E2_4710 +0.8 1.5 hypothetical protein compare
Pf6N2E2_1246 +0.8 1.6 FIG00961372: hypothetical protein compare
Pf6N2E2_2057 +0.8 3.9 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf6N2E2_1032 +0.8 1.4 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_1778 +0.8 1.6 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_502 +0.8 2.7 hypothetical protein compare
Pf6N2E2_5936 +0.8 2.3 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_3326 +0.8 1.0 hypothetical protein compare
Pf6N2E2_1440 +0.7 2.1 Putative tRNA-m1A22 methylase compare
Pf6N2E2_5846 +0.7 6.9 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_5794 +0.7 1.9 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4305 +0.7 0.6 FIG00959590: hypothetical protein compare
Pf6N2E2_1215 +0.7 1.3 probable membrane protein YPO2362 compare
Pf6N2E2_5207 +0.7 0.8 hypothetical protein compare
Pf6N2E2_5178 +0.7 2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3589 +0.7 1.3 Lysine decarboxylase family compare
Pf6N2E2_2788 +0.7 1.0 Transcriptional regulator, AsnC family compare
Pf6N2E2_629 +0.7 1.8 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_5845 +0.7 6.0 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_1141 +0.7 2.3 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_3634 +0.7 1.0 Transporter compare
Pf6N2E2_3557 +0.7 1.1 Chaperone-modulator protein CbpM compare
Pf6N2E2_84 +0.7 0.8 hypothetical protein compare
Pf6N2E2_5576 +0.7 2.5 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_1236 +0.7 0.9 Transcriptional regulator, LysR family compare
Pf6N2E2_3125 +0.7 2.2 Transcriptional regulators, LysR family compare
Pf6N2E2_1108 +0.7 2.5 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_2625 +0.7 2.0 Flagellar P-ring protein FlgI compare
Pf6N2E2_4148 +0.7 6.2 Glutamate-aspartate carrier protein compare
Pf6N2E2_2139 +0.7 1.6 Paraquat-inducible protein A compare
Pf6N2E2_1248 +0.7 2.1 MutT/nudix family protein compare
Pf6N2E2_2594 +0.7 3.3 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_2395 +0.6 2.4 Pyoverdin biosynthesis protein PvdH, L-2,4-diaminobutyrate:2-oxoglutarate aminotransferase (EC 2.6.1.76) compare
Pf6N2E2_2397 +0.6 1.3 Two-component system response regulator QseB compare
Pf6N2E2_4084 +0.6 5.3 Transcriptional regulator compare
Pf6N2E2_384 +0.6 1.5 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4335 +0.6 3.2 Uncharacterized protein ImpB compare
Pf6N2E2_1281 +0.6 1.6 ATPase involved in DNA repair compare
Pf6N2E2_2316 +0.6 5.3 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_5251 +0.6 1.1 FIG00954698: hypothetical protein compare
Pf6N2E2_2318 +0.6 5.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5030 +0.6 3.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_2317 +0.6 5.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_1392 +0.6 2.6 sensor histidine kinase compare
Pf6N2E2_2320 +0.6 5.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_1715 +0.6 2.2 hypothetical protein compare
Pf6N2E2_2561 +0.6 1.1 FIG00955434: hypothetical protein compare
Pf6N2E2_2632 +0.6 3.4 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Pf6N2E2_2045 +0.6 0.8 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_799 +0.6 1.3 hypothetical protein compare
Pf6N2E2_848 +0.6 1.5 hypothetical protein compare
Pf6N2E2_1456 +0.6 2.2 D-xylose transport ATP-binding protein XylG compare
Pf6N2E2_652 +0.6 2.0 General secretion pathway protein E compare
Pf6N2E2_4338 +0.6 2.1 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_3348 +0.6 3.2 hypothetical protein compare
Pf6N2E2_3009 +0.6 2.5 Phage tail tube protein compare
Pf6N2E2_2597 +0.6 4.7 Flagellar regulatory protein FleQ compare
Pf6N2E2_1389 +0.6 4.4 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_3571 +0.6 1.6 Urease accessory protein UreF compare
Pf6N2E2_2579 +0.6 3.3 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_1279 +0.6 2.2 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_2285 +0.6 0.7 FIG00954079: hypothetical protein compare
Pf6N2E2_1325 +0.6 1.7 FIG00954773: hypothetical protein compare
Pf6N2E2_2652 +0.6 1.8 HlyD family secretion protein compare
Pf6N2E2_876 +0.6 2.2 Cobalt-containing nitrile hydratase subunit beta (EC 4.2.1.84) compare
Pf6N2E2_952 +0.6 2.7 putative exported protein compare
Pf6N2E2_2341 +0.6 4.0 Benzoate transport protein compare
Pf6N2E2_1136 +0.6 0.6 Transcriptional regulator, TetR family compare
Pf6N2E2_828 +0.6 3.0 Transcriptional regulator, TetR family compare
Pf6N2E2_846 +0.6 2.9 Universal stress protein family 5 compare
Pf6N2E2_1425 +0.6 1.8 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf6N2E2_1688 +0.6 2.8 Permeases of the major facilitator superfamily compare
Pf6N2E2_5111 +0.6 0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_6140 +0.6 0.4 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5375 +0.6 2.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1398 +0.6 1.9 Rhodanese-related sulfurtransferase compare
Pf6N2E2_2592 +0.6 3.1 Flagellar motor switch protein FliG compare
Pf6N2E2_3862 +0.6 1.8 hypothetical protein compare
Pf6N2E2_1379 +0.6 2.7 Sensory box histidine kinase/response regulator compare
Pf6N2E2_1036 +0.6 1.6 Biopolymer transport protein ExbD/TolR compare
Pf6N2E2_1146 +0.6 2.5 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Pf6N2E2_1912 +0.6 1.8 hypothetical protein compare
Pf6N2E2_4342 +0.6 2.3 Protein phosphatase ImpM compare
Pf6N2E2_4943 +0.6 1.9 PspA/IM30 family protein compare
Pf6N2E2_5115 +0.6 2.5 Type IV fimbrial biogenesis protein PilV compare
Pf6N2E2_4113 +0.6 1.2 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_5130 +0.6 1.4 hypothetical protein compare
Pf6N2E2_1211 +0.5 0.5 Lactoylglutathione lyase compare
Pf6N2E2_2375 +0.5 1.0 Response regulator NasT compare
Pf6N2E2_4964 +0.5 2.6 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_331 +0.5 1.4 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_1299 +0.5 1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_1560 +0.5 1.0 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_2722 +0.5 1.7 FIG00954807: hypothetical protein compare
Pf6N2E2_2413 +0.5 1.4 FIG074102: hypothetical protein compare
Pf6N2E2_4007 +0.5 1.4 FIG00956018: hypothetical protein compare
Pf6N2E2_254 +0.5 2.4 Transcriptional regulator, LysR family compare
Pf6N2E2_3077 +0.5 2.2 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_928 +0.5 0.9 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_2811 +0.5 3.5 FIG00956006: hypothetical protein compare
Pf6N2E2_6057 +0.5 3.1 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3328 +0.5 0.9 transcriptional regulator compare
Pf6N2E2_1091 +0.5 1.6 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_5555 +0.5 0.7 Cold shock protein CspA compare
Pf6N2E2_5906 +0.5 0.9 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_3799 +0.5 2.5 Histidine ammonia-lyase (EC 4.3.1.3) (from data) compare
Pf6N2E2_2724 +0.5 2.3 Nitroreductase family protein compare
Pf6N2E2_2138 +0.5 2.2 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4216 +0.5 1.5 Transcriptional regulator of glmS gene, DeoR family compare
Pf6N2E2_1510 +0.5 2.4 FIG00450095: hypothetical protein compare
Pf6N2E2_1720 +0.5 1.3 hypothetical protein compare
Pf6N2E2_1123 +0.5 2.2 Tol biopolymer transport system, TolR protein compare
Pf6N2E2_715 +0.5 1.7 putative membrane protein compare
Pf6N2E2_3219 +0.5 1.9 hypothetical protein compare
Pf6N2E2_1135 +0.5 1.9 COGs COG3558 compare
Pf6N2E2_1399 +0.5 1.4 Transcriptional regulator, LuxR family compare
Pf6N2E2_6095 +0.5 1.3 tRNA-Asn-GTT compare
Pf6N2E2_2013 +0.5 1.1 hypothetical protein compare
Pf6N2E2_1761 +0.5 2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_2109 +0.5 2.2 NAD-dependent protein deacetylase of SIR2 family compare
Pf6N2E2_726 +0.5 1.8 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf6N2E2_768 +0.5 1.6 Fap amyloid fibril minor component compare
Pf6N2E2_3527 +0.5 3.0 hypothetical protein compare
Pf6N2E2_1382 +0.5 3.4 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_568 +0.5 2.5 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) compare
Pf6N2E2_2092 +0.5 1.6 Cytochrome c5 compare
Pf6N2E2_2097 +0.5 2.2 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_4204 +0.5 0.5 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2125 +0.5 1.4 hypothetical protein compare
Pf6N2E2_2835 +0.5 1.3 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_2309 +0.5 2.0 hypothetical protein compare
Pf6N2E2_352 +0.5 2.4 Opine oxidase subunit B compare
Pf6N2E2_5122 +0.5 2.6 Type IV fimbriae expression regulatory protein PilR compare
Pf6N2E2_127 +0.5 0.6 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3270 +0.5 2.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1177 +0.5 2.4 putative exported protein compare
Pf6N2E2_5785 +0.5 0.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3190 +0.5 1.9 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_497 +0.5 2.5 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf6N2E2_2806 +0.5 1.4 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_1920 +0.5 0.9 Rubredoxin compare
Pf6N2E2_5594 +0.5 1.6 Endonuclease III (EC 4.2.99.18) compare
Pf6N2E2_1972 +0.5 1.6 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_3597 +0.5 1.8 hypothetical protein compare
Pf6N2E2_1373 +0.5 2.2 Transcriptional regulator of various polyols utilization, AraC family compare
Pf6N2E2_1319 +0.5 1.1 FIG074102: hypothetical protein compare
Pf6N2E2_2402 +0.5 0.9 hypothetical protein compare
Pf6N2E2_170 +0.5 1.3 lipoprotein, putative compare
Pf6N2E2_5057 +0.5 2.3 hypothetical protein compare
Pf6N2E2_5736 +0.5 1.5 FIG00961250: hypothetical protein compare
Pf6N2E2_5967 +0.5 1.1 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_1101 +0.5 3.0 Transporter, LysE family compare
Pf6N2E2_4246 +0.5 1.6 SAM-dependent methyltransferases compare
Pf6N2E2_1502 +0.5 1.6 Two-component system regulatory protein compare
Pf6N2E2_4182 +0.5 1.6 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5860 +0.5 3.4 Branched-chain amino acid transport system carrier protein compare
Pf6N2E2_1393 +0.5 1.7 hypothetical protein compare
Pf6N2E2_1342 +0.5 1.9 monooxygenase, putative compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

For carbon source D-Glucose across organisms