Experiment set23IT030 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Carbon source Sucrose 2.5 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3842 -5.7 -5.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3630 -5.3 -6.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_64 -5.2 -3.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5527 -5.2 -5.0 Cold shock protein CspC compare
Pf6N2E2_71 -4.6 -5.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2074 -4.4 -2.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3839 -4.3 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3752 -4.3 -19.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4564 -4.1 -9.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4825 -4.1 -10.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3782 -4.1 -8.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4596 -4.0 -6.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5014 -4.0 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2897 -4.0 -9.9 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_74 -4.0 -2.6 DedD protein compare
Pf6N2E2_77 -3.9 -3.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_1649 -3.8 -7.7 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) conserved
Pf6N2E2_4048 -3.8 -4.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_1650 -3.7 -3.6 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_5176 -3.6 -3.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_1648 -3.6 -7.5 Maltose/maltodextrin ABC transporter, permease protein MalG compare
Pf6N2E2_4597 -3.5 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2258 -3.5 -10.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3610 -3.5 -4.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3253 -3.4 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_63 -3.4 -5.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5177 -3.4 -8.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3252 -3.3 -5.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4826 -3.3 -5.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4279 -3.3 -15.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5150 -3.3 -4.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3783 -3.2 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_1238 -3.2 -2.1 hypothetical protein compare
Pf6N2E2_1402 -3.1 -5.4 hypothetical protein compare
Pf6N2E2_2885 -3.0 -5.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_1645 -3.0 -8.3 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf6N2E2_3940 -2.9 -10.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4278 -2.9 -13.4 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_3932 -2.9 -8.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3751 -2.8 -9.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3170 -2.8 -8.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4277 -2.8 -10.6 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2073 -2.8 -7.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4047 -2.7 -4.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_367 -2.7 -1.7 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2217 -2.6 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_66 -2.6 -7.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2080 -2.6 -1.0 hypothetical protein compare
Pf6N2E2_1646 -2.6 -6.3 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE conserved
Pf6N2E2_98 -2.5 -2.3 putative transmembrane protein compare
Pf6N2E2_3841 -2.5 -4.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5006 -2.5 -2.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5676 -2.5 -4.8 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5175 -2.5 -6.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2465 -2.4 -5.5 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2225 -2.4 -1.6 FIG00953489: hypothetical protein compare
Pf6N2E2_2088 -2.3 -1.3 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_420 -2.3 -1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_1381 -2.3 -6.8 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5728 -2.2 -6.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_50 -2.2 -8.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4362 -2.2 -2.1 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_1089 -2.2 -2.0 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_6140 -2.2 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_302 -2.2 -4.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3885 -2.2 -4.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_2274 -2.1 -2.0 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2518 -2.1 -3.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_552 -2.0 -2.6 Uncharacterized protein ImpF compare
Pf6N2E2_4009 -2.0 -10.9 GGDEF domain protein compare
Pf6N2E2_58 -2.0 -1.3 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_5666 -2.0 -10.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_1136 -2.0 -1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_1647 -2.0 -3.9 Maltose/maltodextrin ABC transporter, permease protein MalF conserved
Pf6N2E2_1806 -1.9 -1.7 hypothetical protein compare
Pf6N2E2_2899 -1.9 -4.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4706 -1.9 -1.1 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_2869 -1.9 -1.2 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3984 -1.9 -9.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_1400 -1.8 -10.5 Sensory box histidine kinase/response regulator compare
Pf6N2E2_1705 -1.8 -1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2549 -1.8 -1.0 hypothetical protein compare
Pf6N2E2_4353 -1.8 -1.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2388 -1.8 -3.8 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_5720 -1.8 -5.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_5906 -1.8 -2.1 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_6047 -1.7 -1.3 hypothetical protein compare
Pf6N2E2_6164 -1.7 -0.9 tRNA-Val-TAC compare
Pf6N2E2_2112 -1.7 -3.2 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) compare
Pf6N2E2_600 -1.7 -1.8 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_2129 -1.7 -1.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_1870 -1.7 -1.4 hypothetical protein compare
Pf6N2E2_2282 -1.7 -2.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_3346 -1.7 -6.2 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_5103 -1.7 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3251 -1.7 -8.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3529 -1.6 -1.3 Toxin A compare
Pf6N2E2_451 -1.6 -2.2 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_5425 -1.6 -0.8 hypothetical protein compare
Pf6N2E2_579 -1.6 -1.3 FIG00962753: hypothetical protein compare
Pf6N2E2_1667 -1.6 -1.8 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3641 -1.6 -2.3 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_122 -1.6 -0.9 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_819 -1.6 -1.7 Response regulator compare
Pf6N2E2_2022 -1.6 -3.4 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_649 -1.6 -2.0 General secretion pathway protein L compare
Pf6N2E2_5391 -1.6 -8.7 Predicted ATPase related to phosphate starvation-inducible protein PhoH conserved
Pf6N2E2_3248 -1.6 -4.7 Probable transmembrane protein compare
Pf6N2E2_1401 -1.5 -6.6 FIG00955631: hypothetical protein compare
Pf6N2E2_2681 -1.5 -1.7 3-phosphoglycerate kinase compare
Pf6N2E2_1652 -1.5 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_2753 -1.5 -2.9 HtrA protease/chaperone protein compare
Pf6N2E2_5531 -1.5 -2.5 hypothetical protein compare
Pf6N2E2_3122 -1.5 -2.2 Chemotaxis signal transduction protein compare
Pf6N2E2_4584 -1.5 -1.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2503 -1.5 -0.8 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_4071 -1.5 -1.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4691 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_1009 -1.4 -2.0 Inositol transport system permease protein compare
Pf6N2E2_4059 -1.4 -0.5 DNA-binding protein HU-alpha compare
Pf6N2E2_5258 -1.4 -5.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_288 -1.4 -0.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2447 -1.4 -4.4 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5742 -1.4 -2.7 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_5564 -1.4 -9.2 Membrane protein glpM compare
Pf6N2E2_2693 -1.4 -0.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5667 -1.4 -6.4 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_953 -1.4 -1.9 FIG00958851: hypothetical protein compare
Pf6N2E2_5252 -1.4 -3.4 FIG00956396: hypothetical protein compare
Pf6N2E2_1548 -1.4 -2.2 Lactoylglutathione lyase compare
Pf6N2E2_476 -1.4 -2.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_4206 -1.4 -1.3 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_33 -1.3 -1.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1981 -1.3 -2.2 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2324 -1.3 -1.7 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_416 -1.3 -2.2 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_1896 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_504 -1.3 -1.9 DNA-binding response regulator compare
Pf6N2E2_1932 -1.3 -3.1 Transcriptional regulator, IclR family compare
Pf6N2E2_3397 -1.3 -1.9 Phage protein compare
Pf6N2E2_1335 -1.3 -2.2 Phospholipid-binding protein compare
Pf6N2E2_2646 -1.3 -0.8 FIG00953416: hypothetical protein compare
Pf6N2E2_2061 -1.3 -1.9 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_813 -1.3 -1.6 Response regulator compare
Pf6N2E2_1758 -1.3 -0.9 Transcriptional regulator, MarR family compare
Pf6N2E2_3003 -1.3 -1.0 Bacteriophage protein GP46 compare
Pf6N2E2_919 -1.3 -0.8 FIG00954373: hypothetical protein compare
Pf6N2E2_2674 -1.3 -0.7 FIG00953856: hypothetical protein compare
Pf6N2E2_968 -1.2 -1.9 FIG00962395: hypothetical protein compare
Pf6N2E2_5780 -1.2 -5.2 Periplasmic protease compare
Pf6N2E2_4599 -1.2 -1.4 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_4640 -1.2 -0.6 hypothetical protein compare
Pf6N2E2_3744 -1.2 -1.4 General secretion pathway protein F compare
Pf6N2E2_2519 -1.2 -0.8 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_161 -1.2 -2.5 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_1902 -1.2 -3.9 Oxidoreductase, aldo/keto reductase family compare
Pf6N2E2_4273 -1.2 -5.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5160 -1.2 -0.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3351 -1.2 -1.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4188 -1.2 -2.2 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_3027 -1.2 -1.0 Baseplate assembly protein V compare
Pf6N2E2_5579 -1.2 -4.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4181 -1.2 -0.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_285 -1.2 -2.1 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_4057 -1.1 -0.8 lipoprotein, putative compare
Pf6N2E2_48 -1.1 -1.9 FIG00955661: hypothetical protein compare
Pf6N2E2_1318 -1.1 -2.8 FIG00553873: hypothetical protein compare
Pf6N2E2_5740 -1.1 -2.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_3875 -1.1 -0.8 FIG00953324: hypothetical protein compare
Pf6N2E2_2666 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_5719 -1.1 -3.0 D-lactate dehydrogenase (EC 1.1.1.28) compare
Pf6N2E2_3634 -1.1 -1.2 Transporter compare
Pf6N2E2_5575 -1.1 -1.3 Glycerol uptake facilitator protein compare
Pf6N2E2_2586 -1.1 -1.0 Hpt domain protein compare
Pf6N2E2_1391 -1.1 -0.7 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3826 -1.1 -4.5 Nitrogen regulation protein NR(I) compare
Pf6N2E2_5156 -1.1 -0.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2509 -1.1 -0.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2849 -1.1 -1.9 Chromosome initiation inhibitor compare
Pf6N2E2_1490 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_5049 -1.1 -0.7 acetyltransferase, GNAT family compare
Pf6N2E2_2424 -1.1 -2.0 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_5499 -1.1 -0.4 hypothetical protein compare
Pf6N2E2_5723 -1.1 -6.3 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_1545 -1.1 -2.0 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2588 -1.1 -2.1 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_1433 -1.1 -2.7 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5346 -1.1 -0.7 rRNA small subunit methyltransferase I compare
Pf6N2E2_2938 -1.1 -2.0 Outer membrane lipoprotein compare
Pf6N2E2_3132 -1.1 -1.9 FIG00954548: hypothetical protein compare
Pf6N2E2_4818 -1.1 -2.5 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_6075 -1.1 -1.6 Chromosome segregation ATPases compare
Pf6N2E2_5986 -1.0 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5746 -1.0 -1.3 Cobalamin synthase compare
Pf6N2E2_1797 -1.0 -1.1 Transcriptional regulator compare
Pf6N2E2_2218 -1.0 -1.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3204 -1.0 -0.8 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_4145 -1.0 -1.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_4994 -1.0 -2.5 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_3504 -1.0 -4.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N2E2

For carbon source Sucrose across organisms