Experiment set23IT029 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Carbon source Sucrose 5 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3782 -5.9 -7.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_64 -5.2 -3.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3752 -4.3 -18.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4596 -4.2 -5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3610 -4.2 -4.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4826 -4.2 -4.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4825 -4.1 -11.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3783 -4.1 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3842 -4.1 -5.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_71 -4.1 -6.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3630 -4.0 -7.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5014 -4.0 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4048 -4.0 -3.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2897 -3.9 -9.5 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_3253 -3.9 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_77 -3.9 -4.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5177 -3.7 -8.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3932 -3.7 -5.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5176 -3.7 -3.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4564 -3.7 -8.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2518 -3.7 -5.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4278 -3.6 -14.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2885 -3.6 -4.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_1650 -3.5 -4.7 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_3839 -3.4 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4597 -3.4 -5.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5150 -3.4 -3.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3940 -3.4 -9.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2258 -3.3 -9.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3751 -3.3 -10.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_63 -3.3 -5.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5728 -3.3 -5.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4047 -3.2 -2.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4279 -3.1 -13.8 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_1238 -3.1 -2.1 hypothetical protein compare
Pf6N2E2_2074 -3.1 -3.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3252 -3.1 -6.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3170 -3.1 -9.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_623 -3.0 -1.2 FIG00954674: hypothetical protein compare
Pf6N2E2_1649 -3.0 -8.1 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) conserved
Pf6N2E2_66 -2.9 -7.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2073 -2.9 -7.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2465 -2.9 -6.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5527 -2.8 -4.8 Cold shock protein CspC compare
Pf6N2E2_1645 -2.8 -7.8 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf6N2E2_302 -2.8 -4.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3841 -2.7 -3.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5006 -2.7 -1.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2753 -2.7 -2.6 HtrA protease/chaperone protein compare
Pf6N2E2_1647 -2.7 -4.6 Maltose/maltodextrin ABC transporter, permease protein MalF conserved
Pf6N2E2_1648 -2.6 -7.2 Maltose/maltodextrin ABC transporter, permease protein MalG compare
Pf6N2E2_3397 -2.6 -2.5 Phage protein compare
Pf6N2E2_1646 -2.6 -6.2 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE conserved
Pf6N2E2_4277 -2.6 -10.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_98 -2.5 -2.3 putative transmembrane protein compare
Pf6N2E2_5676 -2.5 -3.6 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_50 -2.4 -10.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_420 -2.3 -1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4624 -2.2 -0.9 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4276 -2.2 -4.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_579 -2.1 -1.6 FIG00962753: hypothetical protein compare
Pf6N2E2_2791 -2.1 -3.1 FIG00954883: hypothetical protein compare
Pf6N2E2_2899 -2.1 -4.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5175 -2.1 -6.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_178 -2.1 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5666 -2.0 -10.2 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4691 -2.0 -1.6 hypothetical protein compare
Pf6N2E2_600 -2.0 -1.8 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3885 -2.0 -4.4 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_1448 -2.0 -4.9 hypothetical protein compare
Pf6N2E2_1400 -2.0 -10.7 Sensory box histidine kinase/response regulator compare
Pf6N2E2_1136 -1.9 -1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_1806 -1.9 -1.7 hypothetical protein compare
Pf6N2E2_649 -1.9 -3.0 General secretion pathway protein L compare
Pf6N2E2_4706 -1.9 -1.1 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_5013 -1.9 -3.0 Putative membrane protein compare
Pf6N2E2_2217 -1.9 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2274 -1.9 -2.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3251 -1.9 -9.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5720 -1.9 -5.5 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_1381 -1.9 -6.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_3475 -1.9 -1.2 hypothetical protein compare
Pf6N2E2_2323 -1.8 -1.2 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_1402 -1.8 -5.0 hypothetical protein compare
Pf6N2E2_3248 -1.8 -5.4 Probable transmembrane protein compare
Pf6N2E2_4009 -1.7 -9.8 GGDEF domain protein compare
Pf6N2E2_3534 -1.7 -1.2 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3984 -1.7 -9.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3537 -1.7 -3.1 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_4160 -1.7 -1.0 Cytochrome c5 compare
Pf6N2E2_2129 -1.7 -1.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_1401 -1.7 -7.4 FIG00955631: hypothetical protein compare
Pf6N2E2_5571 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_2586 -1.6 -1.0 Hpt domain protein compare
Pf6N2E2_5088 -1.5 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_819 -1.5 -1.7 Response regulator compare
Pf6N2E2_1981 -1.5 -2.2 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2514 -1.5 -1.0 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3589 -1.5 -1.3 Lysine decarboxylase family compare
Pf6N2E2_4584 -1.5 -1.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2003 -1.5 -0.9 hypothetical protein compare
Pf6N2E2_2088 -1.5 -1.1 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2022 -1.5 -3.4 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_58 -1.4 -1.3 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2059 -1.4 -1.2 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_5155 -1.4 -2.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2186 -1.4 -4.7 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_544 -1.4 -2.0 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_193 -1.4 -3.1 hypothetical protein compare
Pf6N2E2_2012 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_4963 -1.4 -1.4 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_4071 -1.4 -1.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1490 -1.4 -2.6 hypothetical protein compare
Pf6N2E2_288 -1.4 -0.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2225 -1.4 -1.2 FIG00953489: hypothetical protein compare
Pf6N2E2_2264 -1.4 -3.7 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1705 -1.4 -1.0 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2588 -1.4 -2.2 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5564 -1.4 -9.0 Membrane protein glpM compare
Pf6N2E2_4206 -1.4 -1.3 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_51 -1.3 -5.9 hypothetical protein compare
Pf6N2E2_893 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_3569 -1.3 -0.9 hypothetical protein compare
Pf6N2E2_3460 -1.3 -0.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3938 -1.3 -8.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_1983 -1.3 -2.3 hypothetical protein compare
Pf6N2E2_1450 -1.3 -1.0 FIG00960438: hypothetical protein compare
Pf6N2E2_5714 -1.3 -0.9 Flavoprotein WrbA compare
Pf6N2E2_5667 -1.3 -5.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2438 -1.3 -1.9 hypothetical protein compare
Pf6N2E2_4353 -1.3 -1.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2646 -1.2 -0.8 FIG00953416: hypothetical protein compare
Pf6N2E2_4077 -1.2 -3.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2447 -1.2 -4.4 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2674 -1.2 -0.7 FIG00953856: hypothetical protein compare
Pf6N2E2_919 -1.2 -0.8 FIG00954373: hypothetical protein compare
Pf6N2E2_504 -1.2 -1.9 DNA-binding response regulator compare
Pf6N2E2_3198 -1.2 -0.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5160 -1.2 -0.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_865 -1.2 -1.3 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_4414 -1.2 -1.1 FIG00953808: hypothetical protein compare
Pf6N2E2_4423 -1.2 -1.1 FIG00953342: hypothetical protein compare
Pf6N2E2_700 -1.2 -3.5 Heme d1 biosynthesis protein NirL compare
Pf6N2E2_3277 -1.2 -1.3 FagA protein compare
Pf6N2E2_4181 -1.2 -0.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_1613 -1.2 -2.0 short-chain dehydrogenase/reductase compare
Pf6N2E2_2381 -1.2 -2.3 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2068 -1.2 -3.1 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_5575 -1.1 -1.3 Glycerol uptake facilitator protein compare
Pf6N2E2_423 -1.1 -1.0 Putative phosphatase YfbT compare
Pf6N2E2_625 -1.1 -2.3 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2424 -1.1 -2.3 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf6N2E2_2707 -1.1 -1.8 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_946 -1.1 -1.8 Transcriptional regulator, LysR family compare
Pf6N2E2_1624 -1.1 -2.1 MbtH-like protein compare
Pf6N2E2_5049 -1.1 -0.7 acetyltransferase, GNAT family compare
Pf6N2E2_5156 -1.1 -0.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_367 -1.1 -1.2 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2080 -1.1 -0.6 hypothetical protein compare
Pf6N2E2_3351 -1.1 -1.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3480 -1.1 -1.2 Transcriptional regulator, ArsR family compare
Pf6N2E2_4715 -1.1 -2.6 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_4362 -1.1 -1.8 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5391 -1.1 -6.6 Predicted ATPase related to phosphate starvation-inducible protein PhoH conserved
Pf6N2E2_4984 -1.1 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2927 -1.1 -1.9 Putative signal peptide protein compare
Pf6N2E2_4372 -1.1 -2.1 FIG00460773: hypothetical protein compare
Pf6N2E2_4503 -1.1 -4.5 Alkanesulfonates-binding protein compare
Pf6N2E2_3122 -1.1 -1.8 Chemotaxis signal transduction protein compare
Pf6N2E2_953 -1.1 -1.5 FIG00958851: hypothetical protein compare
Pf6N2E2_2388 -1.1 -2.2 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_5346 -1.1 -0.7 rRNA small subunit methyltransferase I compare
Pf6N2E2_5499 -1.1 -0.4 hypothetical protein compare
Pf6N2E2_5723 -1.1 -6.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_4599 -1.1 -1.4 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_1723 -1.1 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_89 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_2919 -1.0 -2.7 FIG00955830: hypothetical protein compare
Pf6N2E2_282 -1.0 -1.2 GNAT family acetyltransferase YjcF compare
Pf6N2E2_2218 -1.0 -1.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5794 -1.0 -2.0 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3696 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_5745 -1.0 -3.0 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Pf6N2E2_2061 -1.0 -1.7 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_2852 -1.0 -6.2 GGDEF domain/EAL domain protein compare
Pf6N2E2_2752 -1.0 -2.2 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_1864 -1.0 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_5134 -1.0 -2.5 FIG060329: MOSC domain protein compare
Pf6N2E2_1081 -1.0 -1.1 probable membrane protein YPO3302 compare
Pf6N2E2_5219 -1.0 -4.8 FIG140336: TPR domain protein compare
Pf6N2E2_5103 -1.0 -0.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_434 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_5261 -1.0 -0.4 FIG00956983: hypothetical protein compare
Pf6N2E2_4541 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_5430 -1.0 -3.7 Transglycosylase, Slt family compare
Pf6N2E2_2510 -1.0 -0.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5252 -1.0 -1.9 FIG00956396: hypothetical protein compare
Pf6N2E2_1596 -1.0 -0.5 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5428 -1.0 -2.7 DNA recombination and repair protein RecO compare
Pf6N2E2_4422 -1.0 -1.9 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N2E2

For carbon source Sucrose across organisms