Experiment set23IT028 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Carbon source Sucrose 10 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_64 -4.7 -3.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4596 -3.9 -3.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4826 -3.9 -4.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4048 -3.5 -3.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3752 -3.5 -19.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3783 -3.3 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3630 -3.3 -7.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5527 -3.2 -4.4 Cold shock protein CspC compare
Pf6N2E2_1147 -3.2 -2.2 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_4278 -3.2 -13.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_63 -3.1 -5.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_77 -3.1 -4.2 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_71 -3.0 -6.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4564 -3.0 -8.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5177 -3.0 -8.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3696 -3.0 -1.3 hypothetical protein compare
Pf6N2E2_4279 -3.0 -13.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2258 -2.9 -9.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4597 -2.9 -5.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_1673 -2.9 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2074 -2.9 -3.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5176 -2.8 -4.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_3782 -2.8 -8.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3940 -2.8 -9.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_1650 -2.8 -3.8 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_2897 -2.8 -8.6 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_3932 -2.8 -6.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_1238 -2.7 -1.8 hypothetical protein compare
Pf6N2E2_1647 -2.7 -5.6 Maltose/maltodextrin ABC transporter, permease protein MalF conserved
Pf6N2E2_302 -2.6 -4.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3170 -2.6 -9.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2465 -2.6 -5.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4298 -2.6 -2.5 Uncharacterized protein ImpB compare
Pf6N2E2_3252 -2.6 -5.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_285 -2.6 -2.5 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_4047 -2.6 -3.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_819 -2.5 -1.6 Response regulator compare
Pf6N2E2_66 -2.4 -7.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_968 -2.4 -2.2 FIG00962395: hypothetical protein compare
Pf6N2E2_3751 -2.3 -7.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_1113 -2.3 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_55 -2.3 -1.6 Probable hydrolase compare
Pf6N2E2_2072 -2.3 -3.1 hypothetical protein compare
Pf6N2E2_1648 -2.3 -6.1 Maltose/maltodextrin ABC transporter, permease protein MalG compare
Pf6N2E2_2080 -2.3 -0.9 hypothetical protein compare
Pf6N2E2_2885 -2.3 -5.6 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3842 -2.3 -4.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3841 -2.3 -4.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4277 -2.3 -8.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2073 -2.3 -6.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1649 -2.2 -6.8 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) conserved
Pf6N2E2_5006 -2.2 -2.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3253 -2.2 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3610 -2.2 -4.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5571 -2.2 -1.9 hypothetical protein compare
Pf6N2E2_367 -2.2 -1.4 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_4825 -2.1 -7.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4009 -2.1 -9.3 GGDEF domain protein compare
Pf6N2E2_1692 -2.1 -2.0 transporter, LysE family compare
Pf6N2E2_600 -2.1 -1.4 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_5150 -2.1 -5.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3844 -2.0 -1.9 hypothetical protein compare
Pf6N2E2_5175 -2.0 -5.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_1545 -2.0 -1.4 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_1870 -2.0 -1.3 hypothetical protein compare
Pf6N2E2_4624 -2.0 -0.8 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5676 -2.0 -3.9 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_813 -1.9 -1.3 Response regulator compare
Pf6N2E2_579 -1.9 -1.4 FIG00962753: hypothetical protein compare
Pf6N2E2_1758 -1.9 -1.1 Transcriptional regulator, MarR family compare
Pf6N2E2_5728 -1.9 -5.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_1203 -1.8 -1.2 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_5505 -1.8 -1.7 hypothetical protein compare
Pf6N2E2_6100 -1.8 -1.4 tRNA-Val-TAC compare
Pf6N2E2_3984 -1.8 -9.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_1089 -1.8 -1.6 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_4706 -1.7 -1.0 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_2899 -1.7 -3.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_2448 -1.7 -2.8 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_2420 -1.7 -1.6 hypothetical protein compare
Pf6N2E2_3027 -1.7 -1.2 Baseplate assembly protein V compare
Pf6N2E2_1646 -1.7 -5.7 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE conserved
Pf6N2E2_4615 -1.7 -1.4 type IV pili signal transduction protein PilI compare
Pf6N2E2_1065 -1.7 -2.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2217 -1.7 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2274 -1.6 -1.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5088 -1.6 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3849 -1.6 -1.0 FIG00954739: hypothetical protein compare
Pf6N2E2_3938 -1.6 -8.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_1136 -1.5 -1.0 Transcriptional regulator, TetR family compare
Pf6N2E2_1723 -1.5 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_5103 -1.5 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4601 -1.5 -2.6 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2063 -1.5 -2.2 Predicted cobalt transporter CbtA compare
Pf6N2E2_2483 -1.5 -2.4 Deoxyribonuclease TatD compare
Pf6N2E2_3702 -1.5 -1.9 FIG00953907: hypothetical protein compare
Pf6N2E2_3885 -1.5 -3.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_5391 -1.4 -7.6 Predicted ATPase related to phosphate starvation-inducible protein PhoH conserved
Pf6N2E2_4353 -1.4 -1.0 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_4708 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_5258 -1.4 -4.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2266 -1.4 -2.1 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_623 -1.4 -0.8 FIG00954674: hypothetical protein compare
Pf6N2E2_3466 -1.3 -2.0 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_3204 -1.3 -0.9 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_4742 -1.3 -2.0 Glutathione S-transferase family protein compare
Pf6N2E2_3122 -1.3 -2.1 Chemotaxis signal transduction protein compare
Pf6N2E2_2753 -1.3 -1.8 HtrA protease/chaperone protein compare
Pf6N2E2_3248 -1.3 -2.0 Probable transmembrane protein compare
Pf6N2E2_1469 -1.3 -1.9 NAD-dependent formate dehydrogenase gamma subunit compare
Pf6N2E2_1381 -1.3 -4.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2849 -1.3 -1.9 Chromosome initiation inhibitor compare
Pf6N2E2_6045 -1.3 -1.3 hypothetical protein compare
Pf6N2E2_3300 -1.3 -2.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5746 -1.3 -1.1 Cobalamin synthase compare
Pf6N2E2_444 -1.2 -2.1 hypothetical protein compare
Pf6N2E2_1400 -1.2 -7.2 Sensory box histidine kinase/response regulator compare
Pf6N2E2_2088 -1.2 -1.0 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_3839 -1.2 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5494 -1.2 -2.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4059 -1.2 -0.5 DNA-binding protein HU-alpha compare
Pf6N2E2_3346 -1.2 -4.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_4414 -1.2 -0.8 FIG00953808: hypothetical protein compare
Pf6N2E2_16 -1.2 -0.7 hypothetical protein compare
Pf6N2E2_4963 -1.2 -1.2 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_2473 -1.2 -3.2 Major outer membrane lipoprotein I compare
Pf6N2E2_4962 -1.2 -2.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2292 -1.2 -2.0 Universal stress protein family COG0589 compare
Pf6N2E2_2388 -1.2 -2.7 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_98 -1.2 -1.2 putative transmembrane protein compare
Pf6N2E2_2586 -1.2 -0.8 Hpt domain protein compare
Pf6N2E2_649 -1.2 -1.8 General secretion pathway protein L compare
Pf6N2E2_5972 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_2716 -1.2 -2.0 FIG00954793: hypothetical protein compare
Pf6N2E2_2502 -1.2 -1.1 O-antigen acetylase compare
Pf6N2E2_1512 -1.1 -1.3 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_5564 -1.1 -6.8 Membrane protein glpM compare
Pf6N2E2_1402 -1.1 -3.5 hypothetical protein compare
Pf6N2E2_413 -1.1 -1.3 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_5629 -1.1 -2.4 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5862 -1.1 -1.4 Lipoprotein, putative compare
Pf6N2E2_1401 -1.1 -5.3 FIG00955631: hypothetical protein compare
Pf6N2E2_3611 -1.1 -1.5 HflC protein compare
Pf6N2E2_5667 -1.1 -4.8 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_1335 -1.1 -1.8 Phospholipid-binding protein compare
Pf6N2E2_6007 -1.1 -1.6 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_358 -1.1 -1.6 Haloacid dehalogenase, type II compare
Pf6N2E2_4584 -1.1 -0.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_693 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_642 -1.1 -2.1 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system compare
Pf6N2E2_3171 -1.1 -0.8 hypothetical protein compare
Pf6N2E2_4071 -1.1 -1.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_50 -1.1 -5.3 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_3251 -1.1 -6.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_280 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_5599 -1.1 -1.7 Electron transport complex protein RnfA compare
Pf6N2E2_2083 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_4381 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_4762 -1.1 -1.2 Biotin synthesis protein BioH compare
Pf6N2E2_3323 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_1932 -1.1 -2.3 Transcriptional regulator, IclR family compare
Pf6N2E2_2323 -1.1 -1.0 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_2447 -1.1 -2.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4562 -1.1 -1.9 L-cystine uptake protein TcyP compare
Pf6N2E2_2061 -1.0 -1.5 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_4661 -1.0 -2.2 KluA regulatory protein compare
Pf6N2E2_226 -1.0 -2.1 2,3-dihydroxybiphenyl 1,2-dioxygenase compare
Pf6N2E2_344 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_58 -1.0 -0.9 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_814 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_5160 -1.0 -0.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5095 -1.0 -2.4 Putative inner membrane protein (Fragment) compare
Pf6N2E2_451 -1.0 -1.4 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_1896 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_1153 -1.0 -1.9 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_2264 -1.0 -2.7 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3569 -1.0 -0.6 hypothetical protein compare
Pf6N2E2_1645 -1.0 -5.0 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf6N2E2_5237 -1.0 -1.6 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_85 -1.0 -2.8 FIG045511: hypothetical antitoxin (to FIG022160: hypothetical toxin) compare
Pf6N2E2_2218 -1.0 -1.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_237 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_4181 -1.0 -0.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_2514 -1.0 -0.9 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_6084 -1.0 -2.6 FIG00638667: hypothetical protein compare
Pf6N2E2_2282 -1.0 -1.6 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4546 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_2881 -0.9 -1.9 Putative cytoplasmic protein compare
Pf6N2E2_1488 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_3460 -0.9 -0.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4593 -0.9 -2.4 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf6N2E2_2666 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_416 -0.9 -1.7 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_2674 -0.9 -0.5 FIG00953856: hypothetical protein compare
Pf6N2E2_434 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_5257 -0.9 -5.1 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_1233 -0.9 -3.3 ABC-type protease exporter, ATP-binding component PrtD/AprD compare
Pf6N2E2_659 -0.9 -1.2 Transcriptional regulatory protein ompR compare
Pf6N2E2_2518 -0.9 -1.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_1385 -0.9 -1.4 FIG00956261: hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N2E2

For carbon source Sucrose across organisms