Experiment set23IT026 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Carbon source D-Glucose 10 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3630 -5.5 -5.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4825 -4.7 -9.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_71 -4.7 -5.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_77 -4.6 -3.2 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2074 -4.5 -2.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4596 -4.4 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3842 -4.4 -7.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3839 -4.3 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4564 -4.2 -9.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3027 -4.2 -1.7 Baseplate assembly protein V compare
Pf6N2E2_64 -4.0 -3.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2258 -3.9 -8.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_1402 -3.8 -3.7 hypothetical protein compare
Pf6N2E2_2864 -3.8 -3.0 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_5177 -3.8 -8.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4597 -3.7 -3.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3932 -3.7 -8.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4048 -3.7 -5.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5176 -3.7 -5.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4279 -3.7 -15.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3782 -3.6 -8.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4278 -3.4 -13.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4277 -3.3 -10.8 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_302 -3.3 -5.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3752 -3.3 -21.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3940 -3.3 -10.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4057 -3.3 -1.3 lipoprotein, putative compare
Pf6N2E2_63 -3.2 -6.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4826 -3.2 -6.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_1381 -3.1 -7.1 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_3783 -3.1 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_3466 -3.1 -2.9 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_4047 -3.1 -3.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3253 -3.0 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5150 -3.0 -5.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3751 -2.9 -11.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2073 -2.9 -6.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1400 -2.8 -12.3 Sensory box histidine kinase/response regulator compare
Pf6N2E2_2885 -2.8 -6.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_2465 -2.8 -5.1 Cys regulon transcriptional activator CysB compare
Pf6N2E2_1085 -2.8 -1.8 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_2896 -2.7 -5.1 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_3610 -2.7 -5.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2895 -2.7 -9.1 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_2674 -2.7 -1.1 FIG00953856: hypothetical protein compare
Pf6N2E2_66 -2.7 -8.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5571 -2.6 -2.2 hypothetical protein compare
Pf6N2E2_5014 -2.6 -1.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5006 -2.6 -3.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2080 -2.6 -1.0 hypothetical protein compare
Pf6N2E2_3170 -2.6 -8.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2889 -2.6 -12.4 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_3252 -2.6 -7.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_1335 -2.6 -2.9 Phospholipid-binding protein compare
Pf6N2E2_50 -2.5 -10.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_5175 -2.5 -7.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3248 -2.5 -3.8 Probable transmembrane protein compare
Pf6N2E2_2891 -2.5 -13.3 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_2893 -2.5 -8.2 hypothetical protein compare
Pf6N2E2_2225 -2.4 -1.6 FIG00953489: hypothetical protein compare
Pf6N2E2_4009 -2.4 -11.4 GGDEF domain protein compare
Pf6N2E2_3060 -2.4 -4.7 Outer membrane protein H precursor compare
Pf6N2E2_2899 -2.4 -4.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_2897 -2.3 -10.7 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_2890 -2.3 -10.1 Glucose ABC transport system, inner membrane component 2 compare
Pf6N2E2_2675 -2.3 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_1203 -2.3 -1.5 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_2892 -2.3 -12.0 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_2863 -2.3 -6.8 Gluconate permease compare
Pf6N2E2_3841 -2.2 -5.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_6140 -2.2 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2753 -2.2 -3.5 HtrA protease/chaperone protein compare
Pf6N2E2_6100 -2.2 -1.6 tRNA-Val-TAC compare
Pf6N2E2_4678 -2.1 -0.8 hypothetical protein compare
Pf6N2E2_3737 -2.1 -1.0 General secretion pathway protein M compare
Pf6N2E2_178 -2.1 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_647 -2.0 -2.3 General secretion pathway protein G compare
Pf6N2E2_5241 -2.0 -1.0 Aminopeptidase N compare
Pf6N2E2_1136 -2.0 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_1806 -2.0 -1.7 hypothetical protein compare
Pf6N2E2_2072 -2.0 -3.3 hypothetical protein compare
Pf6N2E2_98 -2.0 -1.7 putative transmembrane protein compare
Pf6N2E2_3849 -2.0 -1.3 FIG00954739: hypothetical protein compare
Pf6N2E2_6035 -1.9 -1.7 alpha/beta hydrolase fold compare
Pf6N2E2_5527 -1.9 -4.5 Cold shock protein CspC compare
Pf6N2E2_3984 -1.8 -9.1 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_2274 -1.8 -2.6 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_1040 -1.8 -1.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4797 -1.8 -1.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4049 -1.8 -6.5 Glycine cleavage system transcriptional activator compare
Pf6N2E2_1821 -1.8 -1.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5676 -1.8 -4.1 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_1774 -1.8 -0.9 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2129 -1.8 -1.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4423 -1.7 -1.2 FIG00953342: hypothetical protein compare
Pf6N2E2_3251 -1.7 -9.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5728 -1.7 -5.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2707 -1.7 -2.2 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_6007 -1.7 -2.4 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_4453 -1.6 -11.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2061 -1.6 -2.1 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_2217 -1.6 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1545 -1.6 -2.3 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_1404 -1.6 -1.5 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_1512 -1.6 -1.8 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_4381 -1.6 -4.3 hypothetical protein compare
Pf6N2E2_5666 -1.6 -8.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2088 -1.6 -1.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_5505 -1.6 -1.7 hypothetical protein compare
Pf6N2E2_4987 -1.5 -0.6 MaoC-like domain protein compare
Pf6N2E2_2518 -1.5 -2.4 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4773 -1.5 -0.8 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_58 -1.5 -1.3 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_1445 -1.5 -1.6 Glutathione S-transferase compare
Pf6N2E2_5536 -1.5 -1.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5316 -1.5 -3.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1886 -1.5 -1.3 hypothetical protein compare
Pf6N2E2_288 -1.5 -0.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_1932 -1.5 -3.3 Transcriptional regulator, IclR family compare
Pf6N2E2_1548 -1.5 -2.8 Lactoylglutathione lyase compare
Pf6N2E2_5640 -1.4 -1.0 FIG00955597: hypothetical protein compare
Pf6N2E2_4059 -1.4 -0.6 DNA-binding protein HU-alpha compare
Pf6N2E2_5258 -1.4 -5.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_5943 -1.4 -2.6 hypothetical protein compare
Pf6N2E2_1705 -1.4 -1.0 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_1401 -1.4 -4.8 FIG00955631: hypothetical protein compare
Pf6N2E2_5667 -1.4 -5.9 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2324 -1.4 -1.7 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_3569 -1.4 -0.9 hypothetical protein compare
Pf6N2E2_5780 -1.4 -5.0 Periplasmic protease compare
Pf6N2E2_3534 -1.4 -1.2 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_443 -1.4 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1238 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_819 -1.3 -1.6 Response regulator compare
Pf6N2E2_358 -1.3 -2.0 Haloacid dehalogenase, type II compare
Pf6N2E2_3132 -1.3 -2.4 FIG00954548: hypothetical protein compare
Pf6N2E2_3938 -1.3 -8.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_1758 -1.3 -0.9 Transcriptional regulator, MarR family compare
Pf6N2E2_2646 -1.3 -0.8 FIG00953416: hypothetical protein compare
Pf6N2E2_3198 -1.3 -0.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4715 -1.3 -3.0 Low-specificity L-threonine aldolase (EC 4.1.2.48) compare
Pf6N2E2_4918 -1.3 -3.4 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_968 -1.3 -1.9 FIG00962395: hypothetical protein compare
Pf6N2E2_3062 -1.3 -2.3 Membrane-associated zinc metalloprotease compare
Pf6N2E2_600 -1.3 -1.5 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_919 -1.3 -0.8 FIG00954373: hypothetical protein compare
Pf6N2E2_5160 -1.3 -0.7 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4414 -1.2 -1.2 FIG00953808: hypothetical protein compare
Pf6N2E2_3661 -1.2 -7.5 hypothetical protein compare
Pf6N2E2_658 -1.2 -7.6 sensor histidine kinase compare
Pf6N2E2_814 -1.2 -2.3 hypothetical protein compare
Pf6N2E2_472 -1.2 -2.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_1469 -1.2 -2.5 NAD-dependent formate dehydrogenase gamma subunit compare
Pf6N2E2_751 -1.2 -2.6 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_48 -1.2 -2.0 FIG00955661: hypothetical protein compare
Pf6N2E2_5049 -1.2 -0.8 acetyltransferase, GNAT family compare
Pf6N2E2_4181 -1.2 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_2507 -1.2 -3.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3725 -1.2 -1.3 FIG085779: Lipoprotein compare
Pf6N2E2_2218 -1.2 -2.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2970 -1.2 -1.7 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_4362 -1.2 -1.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2323 -1.1 -1.2 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_4963 -1.1 -1.3 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_1287 -1.1 -1.2 Mobile element protein compare
Pf6N2E2_5499 -1.1 -0.4 hypothetical protein compare
Pf6N2E2_5346 -1.1 -0.7 rRNA small subunit methyltransferase I compare
Pf6N2E2_2235 -1.1 -2.1 Xanthine permease compare
Pf6N2E2_2508 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_1797 -1.1 -1.2 Transcriptional regulator compare
Pf6N2E2_161 -1.1 -2.4 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_51 -1.1 -4.5 hypothetical protein compare
Pf6N2E2_5579 -1.1 -4.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4700 -1.1 -2.6 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf6N2E2_4706 -1.1 -0.8 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_2723 -1.1 -3.0 YcgN (Fragment) compare
Pf6N2E2_5257 -1.1 -5.8 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
Pf6N2E2_494 -1.1 -1.9 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_1718 -1.1 -1.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_1446 -1.1 -2.7 Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10) compare
Pf6N2E2_1673 -1.1 -1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_4505 -1.1 -3.4 Alkanesulfonates transport system permease protein compare
Pf6N2E2_1893 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_6164 -1.1 -0.7 tRNA-Val-TAC compare
Pf6N2E2_3033 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_1983 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_2068 -1.0 -2.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_5156 -1.0 -1.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_3122 -1.0 -1.6 Chemotaxis signal transduction protein compare
Pf6N2E2_5574 -1.0 -3.3 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_2534 -1.0 -1.9 Cell division protein BolA compare
Pf6N2E2_5261 -1.0 -0.4 FIG00956983: hypothetical protein compare
Pf6N2E2_4146 -1.0 -1.6 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_2514 -1.0 -1.2 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5806 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_4540 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_4611 -1.0 -1.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4541 -1.0 -0.4 hypothetical protein compare
Pf6N2E2_5524 -1.0 -5.0 Outer membrane porin, OprD family compare
Pf6N2E2_3475 -1.0 -0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

For carbon source D-Glucose across organisms