Experiment set23IT025 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Carbon source Sucrose 2.5 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3842 -5.9 -5.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_64 -4.7 -4.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3932 -4.7 -8.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4826 -4.3 -5.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_71 -4.3 -8.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5527 -4.2 -5.0 Cold shock protein CspC compare
Pf6N2E2_3752 -4.2 -21.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3782 -4.1 -7.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3839 -4.1 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4825 -4.1 -12.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_77 -4.1 -4.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3783 -4.0 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_1650 -3.9 -2.7 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf6N2E2_4564 -3.9 -9.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_4597 -3.8 -6.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4596 -3.7 -8.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3630 -3.7 -9.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2074 -3.7 -3.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2885 -3.7 -6.5 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3253 -3.6 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_1649 -3.5 -8.7 Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19) conserved
Pf6N2E2_4048 -3.5 -6.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_1648 -3.5 -4.7 Maltose/maltodextrin ABC transporter, permease protein MalG compare
Pf6N2E2_2897 -3.5 -11.7 Glucokinase (EC 2.7.1.2) compare
Pf6N2E2_4278 -3.4 -15.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_302 -3.4 -5.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5150 -3.3 -5.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5176 -3.3 -6.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_2073 -3.2 -6.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3940 -3.2 -10.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2258 -3.2 -10.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4279 -3.2 -15.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3170 -3.1 -10.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_1645 -3.1 -9.1 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf6N2E2_5177 -3.1 -8.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4047 -3.1 -4.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_819 -3.0 -2.0 Response regulator compare
Pf6N2E2_3751 -2.9 -9.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_1646 -2.9 -6.7 Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE conserved
Pf6N2E2_4277 -2.9 -12.6 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_63 -2.9 -4.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5006 -2.9 -2.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3252 -2.8 -7.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2465 -2.7 -7.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5676 -2.7 -4.3 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_66 -2.7 -6.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_2217 -2.6 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2518 -2.6 -3.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3610 -2.6 -5.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3841 -2.5 -5.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_1381 -2.5 -7.9 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2899 -2.5 -4.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4362 -2.4 -2.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_50 -2.4 -11.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_420 -2.4 -1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_494 -2.4 -3.0 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_1402 -2.3 -5.9 hypothetical protein compare
Pf6N2E2_1647 -2.3 -4.0 Maltose/maltodextrin ABC transporter, permease protein MalF conserved
Pf6N2E2_55 -2.3 -2.1 Probable hydrolase compare
Pf6N2E2_6140 -2.3 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_178 -2.2 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3248 -2.2 -4.2 Probable transmembrane protein compare
Pf6N2E2_5728 -2.1 -6.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5720 -2.1 -5.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4706 -2.1 -1.1 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_4009 -2.0 -10.9 GGDEF domain protein compare
Pf6N2E2_3984 -2.0 -11.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5175 -2.0 -7.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2059 -2.0 -1.3 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1203 -1.9 -1.7 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_2274 -1.8 -2.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5666 -1.8 -9.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2129 -1.8 -1.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_1902 -1.8 -5.2 Oxidoreductase, aldo/keto reductase family compare
Pf6N2E2_1797 -1.8 -1.6 Transcriptional regulator compare
Pf6N2E2_5103 -1.7 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4077 -1.7 -6.2 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_6090 -1.7 -1.1 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_204 -1.7 -1.1 hypothetical protein compare
Pf6N2E2_4414 -1.7 -1.1 FIG00953808: hypothetical protein compare
Pf6N2E2_3251 -1.7 -9.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_414 -1.7 -2.1 Chemotaxis protein CheD compare
Pf6N2E2_1400 -1.7 -10.1 Sensory box histidine kinase/response regulator compare
Pf6N2E2_1401 -1.6 -7.2 FIG00955631: hypothetical protein compare
Pf6N2E2_58 -1.6 -1.5 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_4963 -1.6 -1.5 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_1560 -1.6 -1.7 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_2218 -1.6 -2.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2012 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_1545 -1.6 -2.4 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4071 -1.6 -1.5 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4987 -1.6 -0.6 MaoC-like domain protein compare
Pf6N2E2_2061 -1.6 -2.2 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_5766 -1.5 -0.8 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_3325 -1.5 -1.4 ABC transporter, ATP-binding protein compare
Pf6N2E2_3938 -1.5 -10.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_4059 -1.5 -0.6 DNA-binding protein HU-alpha compare
Pf6N2E2_4206 -1.5 -1.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1981 -1.5 -2.5 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_1512 -1.5 -1.8 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_288 -1.5 -1.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_1404 -1.5 -1.6 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_3534 -1.5 -1.4 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_647 -1.5 -2.2 General secretion pathway protein G compare
Pf6N2E2_3885 -1.5 -4.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_3460 -1.4 -1.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_1441 -1.4 -0.9 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_2753 -1.4 -3.3 HtrA protease/chaperone protein compare
Pf6N2E2_1870 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_2674 -1.4 -0.7 FIG00953856: hypothetical protein compare
Pf6N2E2_285 -1.4 -2.7 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
Pf6N2E2_300 -1.4 -3.2 CrcB protein compare
Pf6N2E2_1074 -1.4 -2.3 FIG00953356: hypothetical protein compare
Pf6N2E2_5564 -1.4 -8.3 Membrane protein glpM compare
Pf6N2E2_2022 -1.4 -3.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_3537 -1.4 -2.6 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1932 -1.4 -3.5 Transcriptional regulator, IclR family compare
Pf6N2E2_2646 -1.3 -0.8 FIG00953416: hypothetical protein compare
Pf6N2E2_5155 -1.3 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_813 -1.3 -1.6 Response regulator compare
Pf6N2E2_3475 -1.3 -1.0 hypothetical protein compare
Pf6N2E2_423 -1.3 -1.1 Putative phosphatase YfbT compare
Pf6N2E2_3397 -1.3 -1.8 Phage protein compare
Pf6N2E2_3198 -1.3 -0.9 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_477 -1.3 -2.8 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_367 -1.3 -1.3 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2252 -1.3 -2.6 NreA-like protein compare
Pf6N2E2_5160 -1.3 -0.7 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5252 -1.3 -3.1 FIG00956396: hypothetical protein compare
Pf6N2E2_4181 -1.3 -0.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_4162 -1.2 -1.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5049 -1.2 -0.8 acetyltransferase, GNAT family compare
Pf6N2E2_5156 -1.2 -0.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5667 -1.2 -5.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2509 -1.2 -0.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4638 -1.2 -0.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2752 -1.2 -2.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5391 -1.2 -6.2 Predicted ATPase related to phosphate starvation-inducible protein PhoH conserved
Pf6N2E2_2938 -1.2 -3.0 Outer membrane lipoprotein compare
Pf6N2E2_5476 -1.2 -2.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5499 -1.2 -0.4 hypothetical protein compare
Pf6N2E2_5346 -1.2 -0.8 rRNA small subunit methyltransferase I compare
Pf6N2E2_5258 -1.2 -5.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf6N2E2_2502 -1.2 -1.8 O-antigen acetylase compare
Pf6N2E2_416 -1.2 -2.4 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_5793 -1.2 -2.2 Aspartyl aminopeptidase compare
Pf6N2E2_5575 -1.2 -1.7 Glycerol uptake facilitator protein compare
Pf6N2E2_942 -1.2 -0.7 Mll6465 protein compare
Pf6N2E2_2088 -1.2 -1.0 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_3346 -1.2 -4.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2284 -1.1 -1.9 Cell division inhibitor-related protein compare
Pf6N2E2_4584 -1.1 -1.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2384 -1.1 -2.6 CmpX compare
Pf6N2E2_3504 -1.1 -4.8 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_1806 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_5520 -1.1 -4.9 Sensory box histidine kinase compare
Pf6N2E2_5898 -1.1 -2.6 Integral membrane protein compare
Pf6N2E2_280 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_2072 -1.1 -1.6 hypothetical protein compare
Pf6N2E2_552 -1.1 -1.8 Uncharacterized protein ImpF compare
Pf6N2E2_5761 -1.1 -1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_5236 -1.1 -2.6 hypothetical protein compare
Pf6N2E2_4541 -1.1 -0.4 hypothetical protein compare
Pf6N2E2_2063 -1.1 -2.6 Predicted cobalt transporter CbtA compare
Pf6N2E2_5950 -1.1 -1.5 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2675 -1.1 -0.5 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5780 -1.1 -4.8 Periplasmic protease compare
Pf6N2E2_3982 -1.1 -1.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf6N2E2_5261 -1.1 -0.4 FIG00956983: hypothetical protein compare
Pf6N2E2_4263 -1.1 -2.4 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_6099 -1.0 -0.3 tRNA-Glu-TTC compare
Pf6N2E2_51 -1.0 -4.1 hypothetical protein compare
Pf6N2E2_1997 -1.0 -2.2 FIG00956406: hypothetical protein compare
Pf6N2E2_968 -1.0 -1.5 FIG00962395: hypothetical protein compare
Pf6N2E2_5579 -1.0 -4.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_625 -1.0 -2.2 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5738 -1.0 -3.9 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_3661 -1.0 -6.4 hypothetical protein compare
Pf6N2E2_4453 -1.0 -7.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4691 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_2397 -1.0 -1.3 Two-component system response regulator QseB compare
Pf6N2E2_74 -1.0 -1.4 DedD protein compare
Pf6N2E2_3514 -1.0 -2.2 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_3271 -1.0 -1.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_5723 -1.0 -5.5 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5571 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_1448 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_2381 -1.0 -2.3 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_4372 -1.0 -2.3 FIG00460773: hypothetical protein compare
Pf6N2E2_1596 -1.0 -0.5 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_613 -1.0 -0.8 lipoprotein, putative compare
Pf6N2E2_4152 -1.0 -2.0 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_2286 -1.0 -2.0 FIG00953287: hypothetical protein compare
Pf6N2E2_3529 -1.0 -1.0 Toxin A compare
Pf6N2E2_2487 -1.0 -0.6 FIG00956090: hypothetical protein compare
Pf6N2E2_1340 -1.0 -1.4 major pilin protein fimA compare
Pf6N2E2_2264 -1.0 -2.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_1081 -1.0 -1.1 probable membrane protein YPO3302 compare
Pf6N2E2_4990 -1.0 -1.7 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_1705 -1.0 -0.8 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N2E2

For carbon source Sucrose across organisms