Experiment set23IT025 for Klebsiella michiganensis M5al

Compare to:

Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

200 most important genes:

  gene name fitness t score description  
BWI76_RS04465 -8.3 -8.3 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04470 -7.9 -10.0 carbamoyl phosphate synthase large subunit compare
BWI76_RS01210 -7.8 -4.8 tyrosine recombinase XerC compare
BWI76_RS02995 -7.5 -10.6 aspartate carbamoyltransferase compare
BWI76_RS09645 -7.2 -2.6 thioredoxin-disulfide reductase compare
BWI76_RS23265 -6.2 -6.2 hypothetical protein compare
BWI76_RS27385 -5.4 -10.3 orotate phosphoribosyltransferase compare
BWI76_RS04510 -5.3 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS15110 -5.3 -12.8 putative excinuclease ABC subunit A compare
BWI76_RS09910 -5.2 -17.0 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS26085 -4.6 -2.9 3-dehydroquinate synthase compare
BWI76_RS10990 -4.4 -2.4 dihydroorotase compare
BWI76_RS11965 -4.0 -3.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS09660 -3.6 -2.5 DNA translocase FtsK compare
BWI76_RS08520 -3.6 -2.8 colicin transporter TolQ compare
BWI76_RS23240 -3.5 -2.4 exonuclease V subunit gamma compare
BWI76_RS01200 -3.4 -2.3 diaminopimelate epimerase compare
BWI76_RS07070 -3.3 -5.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS00180 -3.2 -1.6 F0F1 ATP synthase subunit epsilon compare
BWI76_RS20895 -3.1 -4.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS15825 -3.1 -3.0 hypothetical protein compare
BWI76_RS07065 -3.0 -6.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS15115 -3.0 -4.9 MFS transporter compare
BWI76_RS01615 -2.9 -9.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS01220 -2.9 -7.5 DNA-dependent helicase II compare
BWI76_RS21140 -2.9 -3.3 molecular chaperone HscA compare
BWI76_RS20965 -2.9 -3.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS17720 -2.9 -1.8 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS20995 -2.9 -7.6 RNA degradosome polyphosphate kinase compare
BWI76_RS25335 -2.8 -5.2 stringent starvation protein A compare
BWI76_RS27440 -2.8 -6.2 DNA helicase RecG compare
BWI76_RS20355 -2.8 -4.5 colicin V production protein compare
BWI76_RS16965 -2.7 -7.3 murein lipoprotein compare
BWI76_RS21265 -2.7 -9.7 phosphoribosylformylglycinamidine synthase compare
BWI76_RS17975 -2.6 -7.0 tail-specific protease compare
BWI76_RS20650 -2.5 -2.4 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS01610 -2.5 -8.6 phosphoribosylamine--glycine ligase compare
BWI76_RS15850 -2.5 -1.1 DUF1317 domain-containing protein compare
BWI76_RS23230 -2.5 -2.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS17980 -2.4 -4.6 RNA chaperone ProQ compare
BWI76_RS25070 -2.3 -2.3 hypothetical protein compare
BWI76_RS15840 -2.3 -2.9 prophage protein compare
BWI76_RS12090 -2.3 -1.8 HNH endonuclease compare
BWI76_RS27390 -2.3 -3.0 ribonuclease PH compare
BWI76_RS27430 -2.2 -1.8 (p)ppGpp synthetase compare
BWI76_RS21370 -2.2 -1.5 ATP-dependent RNA helicase SrmB compare
BWI76_RS20435 -2.2 -1.6 chorismate synthase compare
BWI76_RS21350 -2.1 -5.6 anti-RNA polymerase sigma factor SigE compare
BWI76_RS15225 -2.1 -2.4 DeoR family transcriptional regulator compare
BWI76_RS00600 -2.1 -10.1 LacI family transcriptional regulator compare
BWI76_RS13820 -2.1 -2.0 hypothetical protein compare
BWI76_RS25600 -2.0 -1.6 tRNA-Thr compare
BWI76_RS26075 -2.0 -5.6 DNA adenine methylase compare
BWI76_RS01205 -1.9 -4.3 DUF484 family protein compare
BWI76_RS15830 -1.9 -2.3 hypothetical protein compare
BWI76_RS05120 -1.9 -11.6 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS20350 -1.8 -4.6 amidophosphoribosyltransferase compare
BWI76_RS08535 -1.8 -2.6 translocation protein TolB compare
BWI76_RS02530 -1.7 -1.6 tRNA dimethylallyltransferase compare
BWI76_RS25065 -1.7 -2.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS13250 -1.7 -1.4 cytochrome b561 compare
BWI76_RS04715 -1.7 -2.2 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS08525 -1.6 -4.2 colicin transporter compare
BWI76_RS20970 -1.6 -1.8 phosphoribosylglycinamide formyltransferase compare
BWI76_RS16355 -1.6 -2.0 electron transport complex subunit A compare
BWI76_RS10035 -1.6 -1.7 hypothetical protein compare
BWI76_RS09635 -1.6 -1.0 amino acid ABC transporter ATP-binding protein compare
BWI76_RS09970 -1.6 -1.5 porin OmpA compare
BWI76_RS26775 -1.6 -4.5 endo-1,4-D-glucanase compare
BWI76_RS11520 -1.5 -1.4 hypothetical protein compare
BWI76_RS09190 -1.5 -2.3 hypothetical protein compare
BWI76_RS19845 -1.5 -3.8 phosphatase compare
BWI76_RS12345 -1.5 -3.4 nitrite transporter compare
BWI76_RS23480 -1.4 -7.3 EAL domain-containing protein compare
BWI76_RS09825 -1.4 -6.4 envelope biogenesis factor ElyC compare
BWI76_RS27425 -1.4 -2.4 DNA-directed RNA polymerase subunit omega compare
BWI76_RS22645 -1.3 -5.8 RNA polymerase sigma factor RpoS compare
BWI76_RS02410 -1.3 -1.5 EF-P beta-lysylation protein EpmB compare
BWI76_RS06340 -1.3 -1.1 hypothetical protein compare
BWI76_RS15835 -1.3 -0.8 hypothetical protein compare
BWI76_RS22755 -1.3 -4.3 phosphoadenosine phosphosulfate reductase compare
BWI76_RS08530 -1.2 -2.5 protein TolA compare
BWI76_RS03015 -1.2 -1.7 RNase E inhibitor protein compare
BWI76_RS06525 -1.2 -4.5 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS17400 -1.2 -1.4 transporter compare
BWI76_RS20160 -1.2 -3.3 NADH-quinone oxidoreductase subunit H compare
BWI76_RS02580 -1.2 -1.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS19935 -1.2 -1.9 hypothetical protein compare
BWI76_RS21310 -1.2 -1.3 DNA repair protein RecO compare
BWI76_RS04955 -1.2 -1.9 hypoxanthine phosphoribosyltransferase compare
BWI76_RS23805 -1.1 -6.5 ssDNA exonuclease RecJ compare
BWI76_RS19325 -1.1 -2.0 mandelate racemase compare
BWI76_RS10530 -1.1 -2.3 GntR family transcriptional regulator with compare
BWI76_RS13915 -1.1 -4.5 magnesium transport protein MgtC compare
BWI76_RS27915 -1.1 -2.4 YceK/YidQ family lipoprotein compare
BWI76_RS17675 -1.1 -1.4 hypothetical protein compare
BWI76_RS08210 -1.1 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS08375 -1.1 -2.0 pyroglutamyl-peptidase I compare
BWI76_RS12270 -1.1 -3.4 hypothetical protein compare
BWI76_RS12245 -1.1 -5.2 hypothetical protein compare
BWI76_RS16910 -1.1 -1.8 2-keto-4-pentenoate hydratase compare
BWI76_RS15990 -1.1 -4.9 serine protease compare
BWI76_RS12265 -1.1 -4.5 hypothetical protein compare
BWI76_RS01800 -1.1 -2.5 glucose-6-phosphate isomerase compare
BWI76_RS02735 -1.0 -2.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS27435 -1.0 -3.6 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BWI76_RS13595 -1.0 -2.0 transcriptional regulator compare
BWI76_RS12330 -1.0 -1.8 hypothetical protein compare
BWI76_RS11105 -1.0 -1.3 aminodeoxychorismate lyase compare
BWI76_RS05015 -1.0 -1.9 transcriptional regulator compare
BWI76_RS05075 -1.0 -1.0 type II secretion system protein GspG compare
BWI76_RS17190 -1.0 -2.2 TonB system transport protein TonB compare
BWI76_RS03665 -1.0 -1.7 ABC transporter ATP-binding protein compare
BWI76_RS05200 -1.0 -1.5 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS13890 -1.0 -2.2 LysR family transcriptional regulator compare
BWI76_RS12195 -1.0 -3.3 hypothetical protein compare
BWI76_RS09760 -1.0 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS12305 -1.0 -3.3 hypothetical protein compare
BWI76_RS15725 -1.0 -4.4 hypothetical protein compare
BWI76_RS21980 -1.0 -2.6 hypothetical protein compare
BWI76_RS14065 -1.0 -0.9 hypothetical protein compare
BWI76_RS24115 -1.0 -3.6 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
BWI76_RS21580 -1.0 -1.4 SsrA-binding protein compare
BWI76_RS06530 -1.0 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS08385 -1.0 -1.8 citrate (Si)-synthase compare
BWI76_RS16805 -1.0 -1.6 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS13920 -1.0 -3.6 magnesium-translocating P-type ATPase compare
BWI76_RS05840 -1.0 -3.3 glutamate 5-kinase compare
BWI76_RS22690 -1.0 -1.3 adenylyl-sulfate kinase compare
BWI76_RS17180 -1.0 -1.3 hypothetical protein compare
BWI76_RS01870 -1.0 -2.9 diacylglycerol kinase compare
BWI76_RS20145 -1.0 -1.3 NADH-quinone oxidoreductase subunit K compare
BWI76_RS14625 -0.9 -1.1 protein TolA compare
BWI76_RS11155 -0.9 -2.7 penicillin-binding protein activator LpoB compare
BWI76_RS20270 -0.9 -3.3 hypothetical protein compare
BWI76_RS26980 -0.9 -2.3 cold-shock protein compare
BWI76_RS24485 -0.9 -1.6 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS09640 -0.9 -1.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS23915 -0.9 -2.0 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS07185 -0.9 -1.4 hypothetical protein compare
BWI76_RS23125 -0.9 -1.4 propanediol dehydratase small subunit compare
BWI76_RS04645 -0.9 -2.3 3-dehydroquinase compare
BWI76_RS06880 -0.9 -3.3 biopolymer transport protein ExbD/TolR compare
BWI76_RS12385 -0.9 -4.4 DNA polymerase V subunit UmuC compare
BWI76_RS23455 -0.9 -1.3 Na(+)-translocating NADH-quinone reductase subunit E compare
BWI76_RS19330 -0.9 -1.0 HAD family hydrolase compare
BWI76_RS04705 -0.9 -3.8 DNA-binding transcriptional regulator FruR compare
BWI76_RS04530 -0.9 -1.1 peptidylprolyl isomerase SurA compare
BWI76_RS08640 -0.9 -1.5 multidrug efflux pump-associated protein, AcrZ family compare
BWI76_RS26395 -0.9 -2.3 cell division protein FtsE compare
BWI76_RS12295 -0.9 -3.7 hypothetical protein compare
BWI76_RS04305 -0.9 -0.9 molecular chaperone DnaJ compare
BWI76_RS16525 -0.9 -2.3 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS00010 -0.9 -4.9 DNA replication and repair protein RecF compare
BWI76_RS14615 -0.8 -1.1 hypothetical protein compare
BWI76_RS23820 -0.8 -1.4 flavodoxin FldB compare
BWI76_RS19840 -0.8 -1.1 hypothetical protein compare
BWI76_RS09755 -0.8 -2.1 phosphoserine transaminase compare
BWI76_RS12215 -0.8 -3.9 HNH endonuclease compare
BWI76_RS12225 -0.8 -2.4 hypothetical protein compare
BWI76_RS13610 -0.8 -2.8 sugar transporter compare
BWI76_RS12925 -0.8 -2.3 efflux transporter periplasmic adaptor subunit compare
BWI76_RS26460 -0.8 -3.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS11050 -0.8 -2.7 23S rRNA pseudouridine(955/2504/2580) synthase compare
BWI76_RS16920 -0.8 -1.0 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS16395 -0.8 -2.1 glutathione S-transferase compare
BWI76_RS17645 -0.8 -2.0 hypothetical protein compare
BWI76_RS12190 -0.8 -2.7 glycoside hydrolase family protein compare
BWI76_RS07465 -0.8 -1.0 TetR family transcriptional regulator compare
BWI76_RS05555 -0.8 -2.0 Crl family RNA polymerase assembly factor compare
BWI76_RS09455 -0.8 -1.7 YbjN domain-containing protein compare
BWI76_RS20155 -0.8 -1.2 NADH-quinone oxidoreductase subunit I compare
BWI76_RS17920 -0.8 -1.5 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS02775 -0.8 -2.5 outer membrane protein assembly factor compare
BWI76_RS12255 -0.8 -4.6 hypothetical protein compare
BWI76_RS23150 -0.8 -2.7 propanediol utilization phosphotransacylase compare
BWI76_RS21165 -0.8 -1.4 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS12105 -0.8 -3.4 hypothetical protein compare
BWI76_RS12275 -0.8 -3.8 hypothetical protein compare
BWI76_RS26670 -0.8 -5.1 two-component sensor histidine kinase compare
BWI76_RS12250 -0.8 -4.1 terminase compare
BWI76_RS20385 -0.8 -1.2 aspartate-semialdehyde dehydrogenase compare
BWI76_RS19470 -0.7 -1.5 DNA-binding response regulator compare
BWI76_RS16590 -0.7 -1.7 short-chain dehydrogenase compare
BWI76_RS20925 -0.7 -2.9 peptidase M48 compare
BWI76_RS13420 -0.7 -1.1 ABC transporter permease compare
BWI76_RS13215 -0.7 -0.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS26570 -0.7 -1.8 anion permease compare
BWI76_RS12280 -0.7 -2.2 hypothetical protein compare
BWI76_RS21570 -0.7 -1.9 RnfH family protein compare
BWI76_RS04145 -0.7 -1.0 purine-nucleoside phosphorylase compare
BWI76_RS16375 -0.7 -2.0 electron transport complex subunit G compare
BWI76_RS08750 -0.7 -1.0 kinase inhibitor compare
BWI76_RS27310 -0.7 -2.6 glycosyltransferase compare
BWI76_RS13600 -0.7 -1.6 hypothetical protein compare
BWI76_RS12050 -0.7 -2.3 hypothetical protein compare
BWI76_RS25245 -0.7 -2.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BWI76_RS27275 -0.7 -2.9 hypothetical protein compare
BWI76_RS11810 -0.7 -1.0 outer membrane protein OmpW compare
BWI76_RS22765 -0.7 -3.4 sulfite reductase subunit alpha compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant control experiments

For supernatant control Vogels_fungal_media across organisms